Wall clock time and date at job start Sun Mar 29 2020 21:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38673 * 119.27838 * 2 1 4 4 C 1.38009 * 119.62912 * 179.97438 * 3 2 1 5 5 C 1.41003 * 118.28011 * 359.97438 * 4 3 2 6 6 C 1.41023 * 120.70518 * 180.29931 * 5 4 3 7 7 H 1.08001 * 119.99821 * 204.39963 * 6 5 4 8 8 C 1.39943 * 120.00039 * 24.38989 * 6 5 4 9 9 N 1.30866 * 120.00004 * 16.83416 * 8 6 5 10 10 Si 1.86795 * 119.99808 * 196.83404 * 8 6 5 11 11 H 1.48501 * 109.47643 * 60.00234 * 10 8 6 12 12 H 1.48505 * 109.47309 * 180.02562 * 10 8 6 13 13 H 1.48508 * 109.47283 * 300.00004 * 10 8 6 14 14 C 1.41703 * 118.58585 * 0.02562 * 5 4 3 15 15 N 1.38093 * 119.90540 * 180.02562 * 14 5 4 16 16 C 1.48236 * 110.99658 * 66.36187 * 15 14 5 17 17 C 1.51124 * 105.35924 * 144.90203 * 16 15 14 18 18 C 1.30967 * 109.45467 * 343.02693 * 17 16 15 19 19 C 1.48219 * 111.00512 * 180.02562 * 15 14 5 20 20 N 1.31973 * 119.27317 * 179.97438 * 2 1 3 21 21 H 1.09000 * 109.47529 * 270.02693 * 1 2 3 22 22 H 1.09001 * 109.47223 * 30.02837 * 1 2 3 23 23 H 1.08999 * 109.47200 * 150.02427 * 1 2 3 24 24 H 1.08005 * 120.18510 * 359.96898 * 3 2 1 25 25 H 1.08004 * 120.85905 * 180.02562 * 4 3 2 26 26 H 0.96999 * 119.99694 * 179.97438 * 9 8 6 27 27 H 1.09001 * 110.26730 * 263.87368 * 16 15 14 28 28 H 1.08999 * 110.26837 * 25.93482 * 16 15 14 29 29 H 1.07994 * 125.27321 * 163.00184 * 17 16 15 30 30 H 1.08000 * 125.26655 * 179.97438 * 18 17 16 31 31 H 1.09003 * 110.26542 * 334.07581 * 19 15 14 32 32 H 1.08998 * 110.26594 * 96.12859 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5652 1.2180 0.0005 5 6 4.2409 -0.0196 0.0016 6 6 5.6501 -0.0706 0.0085 7 1 6.1608 -0.9407 -0.3769 8 6 6.3868 1.0062 0.5147 9 7 5.8029 1.9009 1.2703 10 14 8.2037 1.1663 0.1116 11 1 8.3771 1.2730 -1.3594 12 1 8.7503 2.3831 0.7644 13 1 8.9287 -0.0302 0.6099 14 6 3.4736 -1.2109 0.0016 15 7 4.1072 -2.4379 0.0031 16 6 4.8425 -2.6544 1.2720 17 6 4.7176 -4.1327 1.5598 18 6 3.7445 -4.6361 0.8422 19 6 3.1215 -3.5449 0.0022 20 7 2.1523 -1.1512 0.0005 21 1 -0.3634 0.0005 1.0276 22 1 -0.3634 0.8897 -0.5143 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6364 2.1398 -0.0005 25 1 4.1135 2.1485 0.0010 26 1 6.3136 2.6471 1.6214 27 1 5.8906 -2.3802 1.1525 28 1 4.3887 -2.0738 2.0751 29 1 5.3353 -4.6880 2.2500 30 1 3.4356 -5.6710 0.8490 31 1 2.1829 -3.2150 0.4476 32 1 2.9535 -3.8999 -1.0146 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163918238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:24 Heat of formation + Delta-G solvation = 66.630285 kcal Electronic energy + Delta-G solvation = -15856.768645 eV Core-core repulsion = 13396.827180 eV Total energy + Delta-G solvation = -2459.941465 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.56276 -37.42844 -34.27419 -32.36452 -30.83857 -29.06678 -28.00055 -27.18832 -24.23568 -22.34449 -20.84497 -19.96838 -18.53689 -17.36660 -16.22319 -15.62265 -14.76187 -14.45533 -13.92217 -13.47036 -13.01388 -12.63273 -12.43836 -12.03688 -11.79156 -11.72364 -11.53822 -11.36549 -11.19138 -10.97755 -10.82911 -10.59664 -10.52734 -9.89292 -9.33124 -9.27475 -8.36469 -8.03910 -7.89702 -7.05584 -6.76743 -4.38130 2.57981 2.65590 2.89460 3.02218 3.05579 3.17585 3.86076 4.51709 4.87064 5.24613 5.37344 5.56732 5.80531 6.03297 6.08609 6.14413 6.32994 6.37769 6.40669 6.48794 6.56612 6.59166 6.79207 6.85237 6.93114 7.04728 7.14244 7.26505 7.47965 7.63927 7.78463 7.99912 8.22341 8.55369 8.68047 8.86807 9.58511 10.05957 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019775 B = 0.012014 C = 0.007893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.598237 B = 2330.083693 C = 3546.396048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.001 4.001 3 C -0.156 4.156 4 C -0.131 4.131 5 C 0.073 3.927 6 C -0.432 4.432 7 H 0.091 0.909 8 C 0.072 3.928 9 N -0.791 5.791 10 Si 0.911 3.089 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.263 1.263 14 C 0.167 3.833 15 N -0.426 5.426 16 C 0.070 3.930 17 C -0.175 4.175 18 C -0.176 4.176 19 C 0.056 3.944 20 N -0.493 5.493 21 H 0.048 0.952 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.097 0.903 25 H 0.128 0.872 26 H 0.283 0.717 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.095 -4.105 0.565 4.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.139 4.139 3 C -0.177 4.177 4 C -0.157 4.157 5 C 0.067 3.933 6 C -0.462 4.462 7 H 0.109 0.891 8 C -0.146 4.146 9 N -0.416 5.416 10 Si 0.735 3.265 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.188 1.188 14 C -0.067 4.067 15 N -0.145 5.145 16 C -0.056 4.056 17 C -0.193 4.193 18 C -0.194 4.194 19 C -0.071 4.071 20 N -0.206 5.206 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.115 0.885 25 H 0.146 0.854 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.101 0.899 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.160 -4.632 0.227 4.780 hybrid contribution 0.827 1.018 0.570 1.430 sum -0.333 -3.614 0.797 3.716 Atomic orbital electron populations 1.20268 0.91677 1.00746 1.00330 1.20037 0.94508 0.88251 1.11139 1.21368 0.95355 0.96846 1.04128 1.21563 0.92319 0.98580 1.03268 1.17957 0.94041 0.89870 0.91416 1.19510 0.90860 1.02120 1.33674 0.89148 1.26013 1.01410 0.94595 0.92630 1.69811 1.38868 1.10583 1.22347 0.86307 0.81509 0.78578 0.80085 1.18675 1.20373 1.18759 1.19602 0.87518 0.90072 1.09552 1.62606 1.20607 0.99995 1.31318 1.21954 1.01092 0.92005 0.90563 1.23671 0.98780 0.96852 1.00013 1.23632 0.97866 0.98872 0.99042 1.21922 0.96577 0.89194 0.99446 1.66589 1.09645 1.29886 1.14435 0.93313 0.92939 0.92752 0.88451 0.85401 0.90611 0.89062 0.92727 0.85505 0.85622 0.89850 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 10.15 36.00 0.37 -0.96 16 2 C 0.00 -0.02 6.79 -82.37 -0.56 -0.58 16 3 C -0.16 -3.68 9.69 -39.50 -0.38 -4.06 16 4 C -0.13 -3.38 8.79 -38.62 -0.34 -3.72 16 5 C 0.07 1.94 5.49 -106.47 -0.58 1.35 16 6 C -0.43 -11.06 7.37 -37.89 -0.28 -11.34 16 7 H 0.09 2.29 6.88 -52.49 -0.36 1.93 16 8 C 0.07 1.73 5.18 -17.32 -0.09 1.64 16 9 N -0.79 -19.61 10.94 55.55 0.61 -19.01 16 10 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 16 11 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 12 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 13 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 14 C 0.17 4.24 6.04 -155.03 -0.94 3.30 16 15 N -0.43 -9.75 5.07 -172.70 -0.88 -10.62 16 16 C 0.07 1.47 5.46 -4.03 -0.02 1.45 16 17 C -0.17 -2.96 10.95 -35.81 -0.39 -3.36 16 18 C -0.18 -2.91 10.95 -35.80 -0.39 -3.31 16 19 C 0.06 1.11 6.31 -4.03 -0.03 1.09 16 20 N -0.49 -12.16 8.02 -8.11 -0.07 -12.23 16 21 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.05 0.84 8.07 -51.93 -0.42 0.43 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 25 H 0.13 3.33 6.23 -52.48 -0.33 3.00 16 26 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 27 H 0.09 1.93 6.93 -51.93 -0.36 1.57 16 28 H 0.05 1.25 7.77 -51.93 -0.40 0.85 16 29 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.08 1.78 6.51 -51.93 -0.34 1.44 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 267.40 15.07 4.03 4.03 Total: -1.00 -27.59 267.40 -8.85 -36.44 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -3.88 Total: 6.74 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -3.64 Total: -18.49 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: -0.33 Total: -41.85 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.59 -8.85 -36.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163918238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.070 kcal (2) G-P(sol) polarization free energy of solvation -27.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds