Wall clock time and date at job start Sun Mar 29 2020 21:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38673 * 119.27838 * 2 1 4 4 C 1.38009 * 119.62912 * 179.97438 * 3 2 1 5 5 C 1.41003 * 118.28011 * 359.97438 * 4 3 2 6 6 C 1.41023 * 120.70518 * 180.29931 * 5 4 3 7 7 H 1.08001 * 119.99821 * 204.39963 * 6 5 4 8 8 C 1.39943 * 120.00039 * 24.38989 * 6 5 4 9 9 N 1.30866 * 120.00004 * 16.83416 * 8 6 5 10 10 Si 1.86795 * 119.99808 * 196.83404 * 8 6 5 11 11 H 1.48501 * 109.47643 * 60.00234 * 10 8 6 12 12 H 1.48505 * 109.47309 * 180.02562 * 10 8 6 13 13 H 1.48508 * 109.47283 * 300.00004 * 10 8 6 14 14 C 1.41703 * 118.58585 * 0.02562 * 5 4 3 15 15 N 1.38093 * 119.90540 * 180.02562 * 14 5 4 16 16 C 1.48236 * 110.99658 * 66.36187 * 15 14 5 17 17 C 1.51124 * 105.35924 * 144.90203 * 16 15 14 18 18 C 1.30967 * 109.45467 * 343.02693 * 17 16 15 19 19 C 1.48219 * 111.00512 * 180.02562 * 15 14 5 20 20 N 1.31973 * 119.27317 * 179.97438 * 2 1 3 21 21 H 1.09000 * 109.47529 * 270.02693 * 1 2 3 22 22 H 1.09001 * 109.47223 * 30.02837 * 1 2 3 23 23 H 1.08999 * 109.47200 * 150.02427 * 1 2 3 24 24 H 1.08005 * 120.18510 * 359.96898 * 3 2 1 25 25 H 1.08004 * 120.85905 * 180.02562 * 4 3 2 26 26 H 0.96999 * 119.99694 * 179.97438 * 9 8 6 27 27 H 1.09001 * 110.26730 * 263.87368 * 16 15 14 28 28 H 1.08999 * 110.26837 * 25.93482 * 16 15 14 29 29 H 1.07994 * 125.27321 * 163.00184 * 17 16 15 30 30 H 1.08000 * 125.26655 * 179.97438 * 18 17 16 31 31 H 1.09003 * 110.26542 * 334.07581 * 19 15 14 32 32 H 1.08998 * 110.26594 * 96.12859 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2096 0.0000 4 6 3.5652 1.2180 0.0005 5 6 4.2409 -0.0196 0.0016 6 6 5.6501 -0.0706 0.0085 7 1 6.1608 -0.9407 -0.3769 8 6 6.3868 1.0062 0.5147 9 7 5.8029 1.9009 1.2703 10 14 8.2037 1.1663 0.1116 11 1 8.3771 1.2730 -1.3594 12 1 8.7503 2.3831 0.7644 13 1 8.9287 -0.0302 0.6099 14 6 3.4736 -1.2109 0.0016 15 7 4.1072 -2.4379 0.0031 16 6 4.8425 -2.6544 1.2720 17 6 4.7176 -4.1327 1.5598 18 6 3.7445 -4.6361 0.8422 19 6 3.1215 -3.5449 0.0022 20 7 2.1523 -1.1512 0.0005 21 1 -0.3634 0.0005 1.0276 22 1 -0.3634 0.8897 -0.5143 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6364 2.1398 -0.0005 25 1 4.1135 2.1485 0.0010 26 1 6.3136 2.6471 1.6214 27 1 5.8906 -2.3802 1.1525 28 1 4.3887 -2.0738 2.0751 29 1 5.3353 -4.6880 2.2500 30 1 3.4356 -5.6710 0.8490 31 1 2.1829 -3.2150 0.4476 32 1 2.9535 -3.8999 -1.0146 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163918238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:24 Heat of formation + Delta-G solvation = 51.055860 kcal Electronic energy + Delta-G solvation = -15857.444003 eV Core-core repulsion = 13396.827180 eV Total energy + Delta-G solvation = -2460.616823 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.30390 -39.13723 -36.12703 -34.01746 -32.70302 -30.70859 -29.73364 -28.85631 -26.01030 -24.07944 -22.65406 -21.74949 -19.98170 -19.25680 -17.87890 -17.43007 -16.43580 -16.18978 -15.66411 -15.12824 -14.71513 -14.28778 -14.15666 -13.74394 -13.43178 -13.32791 -13.16602 -12.94479 -12.84115 -12.60916 -12.56507 -12.16610 -12.06068 -11.72999 -11.14359 -10.90129 -10.16249 -9.95063 -9.60927 -8.88339 -8.58805 -6.30669 0.73734 1.00230 1.30828 1.38027 1.48352 1.52911 2.18399 2.68167 3.15152 3.65595 3.81164 3.92499 4.20429 4.43813 4.58301 4.61452 4.64092 4.76184 4.83423 4.91983 4.95384 5.02537 5.06153 5.18064 5.21528 5.33885 5.44017 5.62801 5.75405 5.89634 6.07991 6.11810 6.32826 6.64489 6.77813 6.98159 7.69348 8.25766 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019775 B = 0.012014 C = 0.007893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.598237 B = 2330.083693 C = 3546.396048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.010 4.010 3 C -0.163 4.163 4 C -0.154 4.154 5 C 0.040 3.960 6 C -0.455 4.455 7 H 0.082 0.918 8 C 0.036 3.964 9 N -0.819 5.819 10 Si 0.981 3.019 11 H -0.263 1.263 12 H -0.267 1.267 13 H -0.257 1.257 14 C 0.154 3.846 15 N -0.443 5.443 16 C 0.072 3.928 17 C -0.174 4.174 18 C -0.160 4.160 19 C 0.050 3.950 20 N -0.504 5.504 21 H 0.063 0.937 22 H 0.078 0.922 23 H 0.060 0.940 24 H 0.126 0.874 25 H 0.117 0.883 26 H 0.291 0.709 27 H 0.080 0.920 28 H 0.023 0.977 29 H 0.166 0.834 30 H 0.171 0.829 31 H 0.068 0.932 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 -5.222 0.724 5.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.148 4.148 3 C -0.184 4.184 4 C -0.180 4.180 5 C 0.034 3.966 6 C -0.484 4.484 7 H 0.100 0.900 8 C -0.180 4.180 9 N -0.445 5.445 10 Si 0.801 3.199 11 H -0.187 1.187 12 H -0.191 1.191 13 H -0.181 1.181 14 C -0.080 4.080 15 N -0.162 5.162 16 C -0.055 4.055 17 C -0.192 4.192 18 C -0.178 4.178 19 C -0.077 4.077 20 N -0.217 5.217 21 H 0.081 0.919 22 H 0.097 0.903 23 H 0.079 0.921 24 H 0.144 0.856 25 H 0.135 0.865 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.041 0.959 29 H 0.184 0.816 30 H 0.188 0.812 31 H 0.086 0.914 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.213 -5.759 0.390 5.898 hybrid contribution 0.722 1.380 0.505 1.637 sum -0.490 -4.379 0.895 4.496 Atomic orbital electron populations 1.20324 0.87979 1.02380 1.01735 1.20915 0.97059 0.87754 1.09108 1.21688 0.94748 0.98433 1.03488 1.21619 0.93524 0.98095 1.04782 1.18330 0.94974 0.90726 0.92570 1.19568 0.90940 1.02887 1.35012 0.89951 1.26790 1.05675 0.93717 0.91813 1.69851 1.40730 1.11113 1.22771 0.85262 0.75941 0.79044 0.79641 1.18711 1.19095 1.18074 1.19899 0.87979 0.90881 1.09235 1.62519 1.21473 0.99996 1.32236 1.21870 0.99816 0.94877 0.88893 1.23774 1.00001 0.94160 1.01293 1.23831 0.96832 0.99795 0.97321 1.22003 0.95660 0.89539 1.00460 1.66752 1.09375 1.30593 1.15012 0.91874 0.90345 0.92097 0.85645 0.86495 0.89838 0.90177 0.95852 0.81640 0.81197 0.91447 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.30 10.15 71.23 0.72 -1.58 16 2 C -0.01 -0.45 6.79 42.64 0.29 -0.16 16 3 C -0.16 -7.71 9.69 22.32 0.22 -7.49 16 4 C -0.15 -8.19 8.79 22.89 0.20 -7.99 16 5 C 0.04 2.20 5.49 -21.06 -0.12 2.08 16 6 C -0.45 -24.18 7.37 23.37 0.17 -24.00 16 7 H 0.08 4.36 6.88 -2.91 -0.02 4.34 16 8 C 0.04 1.76 5.18 85.25 0.44 2.20 16 9 N -0.82 -41.62 10.94 21.83 0.24 -41.38 16 10 Si 0.98 37.51 29.59 68.60 2.03 39.54 16 11 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 12 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 13 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 14 C 0.15 8.06 6.04 134.05 0.81 8.87 16 15 N -0.44 -20.65 5.07 -700.30 -3.55 -24.20 16 16 C 0.07 3.06 5.46 85.43 0.47 3.53 16 17 C -0.17 -5.55 10.95 25.81 0.28 -5.26 16 18 C -0.16 -4.86 10.95 25.82 0.28 -4.58 16 19 C 0.05 1.98 6.31 85.45 0.54 2.52 16 20 N -0.50 -25.15 8.02 -179.58 -1.44 -26.59 16 21 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 22 H 0.08 2.29 8.07 -2.39 -0.02 2.28 16 23 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.13 5.06 8.06 -2.91 -0.02 5.04 16 25 H 0.12 6.34 6.23 -2.91 -0.02 6.33 16 26 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 27 H 0.08 3.50 6.93 -2.39 -0.02 3.48 16 28 H 0.02 1.12 7.77 -2.39 -0.02 1.10 16 29 H 0.17 3.98 8.06 -2.91 -0.02 3.96 16 30 H 0.17 3.70 8.06 -2.91 -0.02 3.68 16 31 H 0.07 2.87 6.51 -2.39 -0.02 2.86 16 32 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -61.66 267.40 2.70 -58.96 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 1.12 Total: 25.55 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 4.31 Total: -31.86 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -4.75 Total: -92.18 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -61.66 2.70 -58.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163918238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.011 kcal (2) G-P(sol) polarization free energy of solvation -61.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds