Wall clock time and date at job start Sun Mar 29 2020 21:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46981 * 2 1 4 4 C 1.52997 * 109.46964 * 120.00432 * 2 1 3 5 5 C 1.50701 * 109.46698 * 184.99661 * 4 2 1 6 6 C 1.38387 * 119.92419 * 89.99969 * 5 4 2 7 7 C 1.38343 * 120.30601 * 179.97438 * 6 5 4 8 8 C 1.37967 * 120.14964 * 0.02562 * 7 6 5 9 9 C 1.39607 * 119.84925 * 359.97438 * 8 7 6 10 10 C 1.43205 * 120.15287 * 180.02562 * 9 8 7 11 11 N 6.54400 * 149.84036 * 185.77513 * 2 1 3 12 12 C 1.37931 * 119.92722 * 270.27846 * 5 4 2 13 13 N 1.46509 * 109.46688 * 240.00484 * 2 1 3 14 14 C 1.36930 * 120.00049 * 84.99983 * 13 2 1 15 15 H 1.07994 * 120.00321 * 359.97438 * 14 13 2 16 16 C 1.38816 * 119.99702 * 179.97438 * 14 13 2 17 17 N 1.31617 * 120.00329 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99819 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46953 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47108 * 120.00242 * 18 16 14 21 21 H 1.48498 * 109.47221 * 240.00504 * 18 16 14 22 22 H 1.09000 * 109.46933 * 300.00156 * 1 2 3 23 23 H 1.09000 * 109.47304 * 59.99557 * 1 2 3 24 24 H 1.08997 * 109.46981 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46958 * 65.00256 * 4 2 1 26 26 H 1.08998 * 109.47444 * 304.99168 * 4 2 1 27 27 H 1.08002 * 119.84938 * 0.02562 * 6 5 4 28 28 H 1.07998 * 119.92228 * 179.97438 * 7 6 5 29 29 H 1.08003 * 120.07671 * 180.02562 * 8 7 6 30 30 H 1.08004 * 120.07567 * 0.02562 * 12 5 4 31 31 H 0.96998 * 119.99382 * 265.00270 * 13 2 1 32 32 H 0.96991 * 120.00420 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 6 4.1314 0.4510 1.9692 7 6 5.5094 0.5561 2.0327 8 6 6.3055 -0.4024 1.4403 9 6 5.7175 -1.4805 0.7762 10 6 6.5376 -2.4794 0.1595 11 7 7.1882 -3.2711 -0.3308 12 6 4.3259 -1.5773 0.7110 13 7 2.0183 -0.6906 -1.1963 14 6 2.1490 -0.0074 -2.3758 15 1 1.8918 1.0404 -2.4244 16 6 2.6122 -0.6616 -3.5091 17 7 2.9251 -1.9387 -3.4502 18 14 2.7898 0.2702 -5.1184 19 1 2.3750 1.6823 -4.9211 20 1 4.2067 0.2282 -5.5609 21 1 1.9295 -0.3590 -6.1524 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.7517 -1.7716 1.2054 26 1 1.6055 -0.2618 2.1369 27 1 3.5129 1.2039 2.4350 28 1 5.9629 1.3908 2.5464 29 1 7.3811 -0.3194 1.4909 30 1 3.8645 -2.4062 0.1946 31 1 2.2489 -1.6317 -1.1528 32 1 3.2484 -2.3959 -4.2421 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171179577.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:08 Heat of formation + Delta-G solvation = 53.069504 kcal Electronic energy + Delta-G solvation = -15272.706452 eV Core-core repulsion = 12812.176948 eV Total energy + Delta-G solvation = -2460.529505 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.33835 -36.44782 -35.66585 -32.72544 -31.09263 -30.91031 -28.60710 -26.09259 -23.72963 -23.54624 -21.59636 -19.98824 -17.92735 -17.17127 -16.05344 -15.37105 -14.69939 -14.29253 -13.81393 -13.68514 -13.42839 -13.26523 -12.79932 -12.52575 -12.33122 -12.01282 -11.80712 -11.58757 -11.41589 -11.00637 -10.87593 -10.71846 -10.50584 -10.30477 -9.97012 -9.64522 -8.91461 -8.64304 -8.40252 -6.93681 -5.74700 -3.02305 1.09225 1.63292 3.00721 3.27230 3.44538 3.50086 3.52627 4.12358 4.27908 4.61278 5.02535 5.06630 5.27903 5.43888 5.52718 5.59862 5.74305 5.77251 5.88300 6.02551 6.16674 6.24619 6.31351 6.42197 6.53023 6.56580 6.65080 6.78088 6.90465 7.07492 7.13973 7.73196 7.82027 8.43714 9.55456 10.12159 10.46586 11.47982 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.009701 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.745545 B = 2885.537357 C = 3825.741360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.175 3.825 3 H 0.049 0.951 4 C -0.090 4.090 5 C -0.061 4.061 6 C -0.092 4.092 7 C -0.127 4.127 8 C -0.084 4.084 9 C -0.030 4.030 10 C 0.263 3.737 11 N -0.429 5.429 12 C -0.039 4.039 13 N -0.721 5.721 14 C -0.234 4.234 15 H 0.069 0.931 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.901 3.099 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.293 1.293 22 H 0.036 0.964 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.134 0.866 31 H 0.382 0.618 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.897 4.868 13.626 14.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.065 3.935 3 H 0.067 0.933 4 C -0.128 4.128 5 C -0.061 4.061 6 C -0.111 4.111 7 C -0.145 4.145 8 C -0.104 4.104 9 C -0.033 4.033 10 C -0.052 4.052 11 N -0.105 5.105 12 C -0.060 4.060 13 N -0.363 5.363 14 C -0.365 4.365 15 H 0.087 0.913 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.733 3.267 19 H -0.206 1.206 20 H -0.220 1.220 21 H -0.220 1.220 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.216 0.784 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.922 3.764 12.716 13.400 hybrid contribution -0.081 0.492 -1.008 1.125 sum 1.841 4.256 11.708 12.593 Atomic orbital electron populations 1.22445 0.99148 1.00895 0.99987 1.20238 0.91658 0.95556 0.86052 0.93317 1.21012 0.90200 1.02207 0.99388 1.19748 0.96212 0.93990 0.96148 1.21215 0.94735 0.97065 0.98044 1.20918 0.93648 0.98940 1.00956 1.21009 0.99783 0.92951 0.96687 1.15984 0.91616 0.93464 1.02267 1.25745 0.93144 0.93138 0.93162 1.81169 1.09832 1.10360 1.09117 1.21128 0.90935 0.99088 0.94808 1.42425 1.78057 1.10533 1.05289 1.19227 1.36194 0.93812 0.87267 0.91263 1.24684 1.02285 0.95921 0.97903 1.69635 1.51038 1.08595 1.28725 0.86204 0.77291 0.78847 0.84400 1.20595 1.22005 1.21987 0.94507 0.92746 0.93478 0.90952 0.90931 0.85787 0.85611 0.85771 0.84859 0.78422 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.49 37.16 0.35 -2.40 16 2 C 0.17 3.18 2.88 -67.92 -0.20 2.98 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 C -0.09 -1.30 4.89 -27.88 -0.14 -1.44 16 5 C -0.06 -0.90 4.95 -104.68 -0.52 -1.42 16 6 C -0.09 -1.15 9.69 -39.49 -0.38 -1.53 16 7 C -0.13 -1.47 10.03 -39.64 -0.40 -1.87 16 8 C -0.08 -1.08 9.76 -39.17 -0.38 -1.47 16 9 C -0.03 -0.47 5.73 -106.93 -0.61 -1.09 16 10 C 0.26 4.67 15.33 -22.47 -0.34 4.33 16 11 N -0.43 -8.41 18.54 41.83 0.78 -7.64 16 12 C -0.04 -0.64 8.79 -39.17 -0.34 -0.99 16 13 N -0.72 -16.91 4.56 -53.42 -0.24 -17.16 16 14 C -0.23 -6.28 9.93 -15.06 -0.15 -6.43 16 15 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 18 Si 0.90 22.52 29.55 -169.99 -5.02 17.49 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 26 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 27 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.13 2.39 7.54 -52.48 -0.40 1.99 16 31 H 0.38 9.51 6.99 -40.82 -0.29 9.22 16 32 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 287.51 15.07 4.33 4.33 Total: -1.00 -30.85 287.51 -6.66 -37.51 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.02 Total: 4.32 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -3.21 Total: -11.75 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: 1.26 Total: -51.91 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.85 -6.66 -37.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171179577.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.581 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds