Wall clock time and date at job start Sun Mar 29 2020 21:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46981 * 2 1 4 4 C 1.52997 * 109.46964 * 120.00432 * 2 1 3 5 5 C 1.50701 * 109.46698 * 184.99661 * 4 2 1 6 6 C 1.38387 * 119.92419 * 89.99969 * 5 4 2 7 7 C 1.38343 * 120.30601 * 179.97438 * 6 5 4 8 8 C 1.37967 * 120.14964 * 0.02562 * 7 6 5 9 9 C 1.39607 * 119.84925 * 359.97438 * 8 7 6 10 10 C 1.43205 * 120.15287 * 180.02562 * 9 8 7 11 11 N 6.54400 * 149.84036 * 185.77513 * 2 1 3 12 12 C 1.37931 * 119.92722 * 270.27846 * 5 4 2 13 13 N 1.46509 * 109.46688 * 240.00484 * 2 1 3 14 14 C 1.36930 * 120.00049 * 84.99983 * 13 2 1 15 15 H 1.07994 * 120.00321 * 359.97438 * 14 13 2 16 16 C 1.38816 * 119.99702 * 179.97438 * 14 13 2 17 17 N 1.31617 * 120.00329 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99819 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46953 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47108 * 120.00242 * 18 16 14 21 21 H 1.48498 * 109.47221 * 240.00504 * 18 16 14 22 22 H 1.09000 * 109.46933 * 300.00156 * 1 2 3 23 23 H 1.09000 * 109.47304 * 59.99557 * 1 2 3 24 24 H 1.08997 * 109.46981 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46958 * 65.00256 * 4 2 1 26 26 H 1.08998 * 109.47444 * 304.99168 * 4 2 1 27 27 H 1.08002 * 119.84938 * 0.02562 * 6 5 4 28 28 H 1.07998 * 119.92228 * 179.97438 * 7 6 5 29 29 H 1.08003 * 120.07671 * 180.02562 * 8 7 6 30 30 H 1.08004 * 120.07567 * 0.02562 * 12 5 4 31 31 H 0.96998 * 119.99382 * 265.00270 * 13 2 1 32 32 H 0.96991 * 120.00420 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 6 4.1314 0.4510 1.9692 7 6 5.5094 0.5561 2.0327 8 6 6.3055 -0.4024 1.4403 9 6 5.7175 -1.4805 0.7762 10 6 6.5376 -2.4794 0.1595 11 7 7.1882 -3.2711 -0.3308 12 6 4.3259 -1.5773 0.7110 13 7 2.0183 -0.6906 -1.1963 14 6 2.1490 -0.0074 -2.3758 15 1 1.8918 1.0404 -2.4244 16 6 2.6122 -0.6616 -3.5091 17 7 2.9251 -1.9387 -3.4502 18 14 2.7898 0.2702 -5.1184 19 1 2.3750 1.6823 -4.9211 20 1 4.2067 0.2282 -5.5609 21 1 1.9295 -0.3590 -6.1524 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.7517 -1.7716 1.2054 26 1 1.6055 -0.2618 2.1369 27 1 3.5129 1.2039 2.4350 28 1 5.9629 1.3908 2.5464 29 1 7.3811 -0.3194 1.4909 30 1 3.8645 -2.4062 0.1946 31 1 2.2489 -1.6317 -1.1528 32 1 3.2484 -2.3959 -4.2421 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171179577.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:07 Heat of formation + Delta-G solvation = 35.258428 kcal Electronic energy + Delta-G solvation = -15273.478799 eV Core-core repulsion = 12812.176948 eV Total energy + Delta-G solvation = -2461.301851 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.45750 -37.90800 -37.14673 -34.49200 -32.50498 -32.04084 -30.34553 -27.29149 -25.67292 -24.73318 -22.73420 -21.43428 -19.29369 -19.00649 -17.09130 -16.79890 -16.32337 -15.61345 -15.42986 -15.21178 -14.93539 -14.48994 -14.09431 -13.98451 -13.81760 -13.48135 -13.07104 -13.00776 -12.80646 -12.69220 -12.43730 -12.17486 -12.05347 -11.75286 -11.60400 -11.49264 -10.90790 -9.75349 -9.52035 -8.90480 -7.89002 -5.13310 -0.05078 0.56688 1.45102 1.46204 1.54964 1.61068 2.00064 2.58898 2.91484 3.06907 3.46546 3.93813 4.02287 4.08963 4.30477 4.39657 4.51166 4.61818 4.71067 4.84317 4.87039 5.06199 5.13394 5.15543 5.25589 5.44169 5.49167 5.52717 5.58736 5.68157 5.79623 6.08871 6.33731 6.44918 7.40856 8.21863 8.41745 9.34410 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.009701 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.745545 B = 2885.537357 C = 3825.741360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.167 3.833 3 H 0.049 0.951 4 C -0.080 4.080 5 C -0.077 4.077 6 C -0.081 4.081 7 C -0.116 4.116 8 C -0.077 4.077 9 C -0.056 4.056 10 C 0.277 3.723 11 N -0.476 5.476 12 C -0.062 4.062 13 N -0.732 5.732 14 C -0.218 4.218 15 H 0.075 0.925 16 C -0.078 4.078 17 N -0.969 5.969 18 Si 0.956 3.044 19 H -0.262 1.262 20 H -0.303 1.303 21 H -0.299 1.299 22 H 0.077 0.923 23 H 0.031 0.969 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.114 0.886 27 H 0.160 0.840 28 H 0.168 0.832 29 H 0.148 0.852 30 H 0.102 0.898 31 H 0.371 0.629 32 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.477 7.792 15.971 17.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.059 3.941 3 H 0.067 0.933 4 C -0.118 4.118 5 C -0.077 4.077 6 C -0.100 4.100 7 C -0.134 4.134 8 C -0.097 4.097 9 C -0.059 4.059 10 C -0.037 4.037 11 N -0.152 5.152 12 C -0.083 4.083 13 N -0.372 5.372 14 C -0.350 4.350 15 H 0.093 0.907 16 C -0.269 4.269 17 N -0.621 5.621 18 Si 0.787 3.213 19 H -0.187 1.187 20 H -0.231 1.231 21 H -0.227 1.227 22 H 0.096 0.904 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.132 0.868 27 H 0.177 0.823 28 H 0.186 0.814 29 H 0.165 0.835 30 H 0.120 0.880 31 H 0.203 0.797 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.471 6.733 15.104 16.602 hybrid contribution -0.003 -0.316 -1.589 1.620 sum 1.468 6.417 13.515 15.033 Atomic orbital electron populations 1.22316 0.97698 1.00772 1.00888 1.20530 0.92508 0.95419 0.85599 0.93254 1.20933 0.90248 1.01720 0.98915 1.19865 0.96238 0.94576 0.96990 1.21654 0.95692 0.96294 0.96330 1.21414 0.93258 0.99122 0.99571 1.21369 1.01326 0.91784 0.95233 1.16174 0.91170 0.94466 1.04102 1.26248 0.92449 0.92772 0.92221 1.81154 1.11443 1.11738 1.10869 1.21027 0.91617 0.99464 0.96161 1.42658 1.78136 1.10199 1.06219 1.19589 1.33188 0.93977 0.88276 0.90716 1.25360 1.03958 0.96699 1.00931 1.69796 1.53474 1.10107 1.28717 0.85300 0.76275 0.78652 0.81038 1.18666 1.23135 1.22682 0.90394 0.94995 0.94147 0.91725 0.86795 0.82272 0.81406 0.83465 0.87965 0.79728 0.94768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.86 9.49 71.98 0.68 -4.18 16 2 C 0.17 5.73 2.88 44.99 0.13 5.86 16 3 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 4 C -0.08 -2.12 4.89 29.85 0.15 -1.97 16 5 C -0.08 -2.11 4.95 -19.90 -0.10 -2.21 16 6 C -0.08 -1.66 9.69 22.33 0.22 -1.45 16 7 C -0.12 -2.14 10.03 22.23 0.22 -1.91 16 8 C -0.08 -1.78 9.76 22.54 0.22 -1.56 16 9 C -0.06 -1.75 5.73 -21.36 -0.12 -1.87 16 10 C 0.28 10.19 15.33 88.33 1.35 11.54 16 11 N -0.48 -19.49 18.54 19.00 0.35 -19.13 16 12 C -0.06 -2.07 8.79 22.54 0.20 -1.87 16 13 N -0.73 -34.35 4.56 -322.93 -1.47 -35.82 16 14 C -0.22 -11.67 9.93 84.04 0.83 -10.84 16 15 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 16 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 17 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 18 Si 0.96 46.92 29.55 68.60 2.03 48.95 16 19 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.30 -15.25 7.11 99.48 0.71 -14.55 16 21 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 22 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.81 8.08 -2.39 -0.02 1.79 16 26 H 0.11 2.07 8.08 -2.39 -0.02 2.05 16 27 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 28 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.10 3.97 7.54 -2.91 -0.02 3.95 16 31 H 0.37 19.03 6.99 -92.71 -0.65 18.39 16 32 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -69.41 287.51 5.91 -63.50 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.47 Total: 16.67 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 4.25 Total: -14.45 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -0.84 Total: -114.66 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -69.41 5.91 -63.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171179577.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.756 kcal (2) G-P(sol) polarization free energy of solvation -69.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds