Wall clock time and date at job start Sun Mar 29 2020 21:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47179 * 2 1 4 4 C 1.52999 * 109.47513 * 239.99929 * 2 1 3 5 5 C 1.50694 * 109.47391 * 174.99710 * 4 2 1 6 6 C 1.38364 * 119.84468 * 89.99970 * 5 4 2 7 7 C 1.37952 * 120.14850 * 179.69908 * 6 5 4 8 8 C 1.39628 * 119.84862 * 0.27863 * 7 6 5 9 9 C 1.43197 * 120.15234 * 180.02562 * 8 7 6 10 10 N 7.49814 * 167.88757 * 260.92854 * 2 1 3 11 11 C 1.39640 * 119.69807 * 359.97438 * 8 7 6 12 12 C 1.37944 * 119.84566 * 359.97438 * 11 8 7 13 13 N 1.46499 * 109.47321 * 119.99508 * 2 1 3 14 14 C 1.36936 * 120.00342 * 275.00219 * 13 2 1 15 15 H 1.07999 * 119.99970 * 359.97438 * 14 13 2 16 16 C 1.38813 * 120.00183 * 180.02562 * 14 13 2 17 17 N 1.31617 * 120.00069 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99873 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47229 * 60.00192 * 18 16 14 20 20 H 1.48498 * 109.47151 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47441 * 299.99808 * 18 16 14 22 22 H 1.08997 * 109.47163 * 60.00723 * 1 2 3 23 23 H 1.09004 * 109.46670 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47044 * 300.00098 * 1 2 3 25 25 H 1.08996 * 109.47115 * 54.99214 * 4 2 1 26 26 H 1.09001 * 109.46904 * 295.00359 * 4 2 1 27 27 H 1.08002 * 119.92862 * 359.97438 * 6 5 4 28 28 H 1.08000 * 120.07526 * 180.29834 * 7 6 5 29 29 H 1.07997 * 120.07565 * 179.97438 * 11 8 7 30 30 H 1.07998 * 119.92827 * 180.02562 * 12 11 8 31 31 H 0.97002 * 119.99529 * 95.00009 * 13 2 1 32 32 H 0.96992 * 120.00351 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 6 4.3268 -1.5841 -0.7137 7 6 5.7023 -1.4962 -0.7733 8 6 6.3020 -0.4229 -1.4350 9 6 7.7291 -0.3255 -1.5013 10 7 8.8612 -0.2481 -1.5537 11 6 5.5037 0.5546 -2.0328 12 6 4.1296 0.4537 -1.9665 13 7 2.0184 -0.6905 1.1962 14 6 2.1492 -0.0073 2.3758 15 1 1.8927 1.0406 2.4241 16 6 2.6124 -0.6615 3.5091 17 7 2.9255 -1.9385 3.4500 18 14 2.7901 0.2703 5.1182 19 1 1.4673 0.8059 5.5288 20 1 3.2992 -0.6480 6.1683 21 1 3.7444 1.3935 4.9371 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6054 -0.2619 -2.1369 26 1 1.7517 -1.7715 -1.2055 27 1 3.8617 -2.4138 -0.2021 28 1 6.3138 -2.2560 -0.3095 29 1 5.9612 1.3875 -2.5458 30 1 3.5110 1.2087 -2.4287 31 1 2.2491 -1.6317 1.1526 32 1 3.2488 -2.3958 4.2419 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172290400.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:15 Heat of formation + Delta-G solvation = 52.464019 kcal Electronic energy + Delta-G solvation = -15127.395289 eV Core-core repulsion = 12666.839529 eV Total energy + Delta-G solvation = -2460.555760 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.35028 -36.66742 -35.66631 -32.74504 -31.12738 -30.81409 -28.66598 -26.55769 -23.77709 -22.51300 -22.12971 -19.82477 -18.66738 -17.23352 -15.47280 -15.39571 -14.68721 -14.30813 -13.89641 -13.75881 -13.52043 -13.24420 -13.07298 -12.67458 -12.40797 -12.15704 -11.82411 -11.56752 -11.47490 -10.89219 -10.81082 -10.70418 -10.59141 -10.32962 -10.02752 -9.65560 -8.92608 -8.72766 -8.36553 -6.95599 -5.76727 -3.04050 1.03462 1.64192 2.80018 3.15740 3.44239 3.49427 3.49609 4.06046 4.14803 4.59821 5.01568 5.09538 5.14272 5.46408 5.56195 5.60929 5.71533 5.79780 5.92461 6.00667 6.14585 6.24921 6.29382 6.37040 6.49971 6.56650 6.62764 6.78554 6.94316 7.05677 7.14250 7.62019 7.70666 8.42243 9.53956 10.10201 10.45190 11.45969 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019976 B = 0.008224 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.354116 B = 3404.018408 C = 4348.334067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.176 3.824 3 H 0.049 0.951 4 C -0.095 4.095 5 C -0.026 4.026 6 C -0.091 4.091 7 C -0.063 4.063 8 C -0.052 4.052 9 C 0.267 3.733 10 N -0.440 5.440 11 C -0.074 4.074 12 C -0.125 4.125 13 N -0.720 5.720 14 C -0.234 4.234 15 H 0.068 0.932 16 C -0.011 4.011 17 N -0.933 5.933 18 Si 0.902 3.098 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.287 1.287 22 H 0.036 0.964 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.135 0.865 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.383 0.617 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.794 2.026 -11.843 12.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.066 3.934 3 H 0.067 0.933 4 C -0.133 4.133 5 C -0.027 4.027 6 C -0.109 4.109 7 C -0.084 4.084 8 C -0.055 4.055 9 C -0.048 4.048 10 N -0.116 5.116 11 C -0.094 4.094 12 C -0.143 4.143 13 N -0.362 5.362 14 C -0.366 4.366 15 H 0.086 0.914 16 C -0.207 4.207 17 N -0.581 5.581 18 Si 0.733 3.267 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.214 1.214 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.153 0.847 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.217 0.783 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.989 2.263 -11.773 12.029 hybrid contribution -0.254 0.190 1.183 1.224 sum 0.735 2.453 -10.591 10.896 Atomic orbital electron populations 1.22445 0.99088 1.00921 1.00018 1.20220 0.91687 0.95551 0.85967 0.93319 1.21087 0.90418 1.02323 0.99477 1.20122 0.96343 0.93095 0.93100 1.21045 0.92528 0.99836 0.97508 1.21132 0.95350 0.96066 0.95855 1.15948 0.83957 0.99375 1.06267 1.25862 0.92818 0.93133 0.92971 1.81191 1.12201 1.08554 1.09632 1.20987 0.93568 0.96991 0.97874 1.20896 0.93917 0.98403 1.01098 1.42400 1.78072 1.10549 1.05216 1.19148 1.36324 0.93771 0.87327 0.91417 1.24663 1.02246 0.95937 0.97859 1.69616 1.51055 1.08567 1.28911 0.86344 0.77731 0.78704 0.83878 1.21389 1.21779 1.21366 0.94494 0.93448 0.92723 0.90918 0.90782 0.84671 0.85457 0.85735 0.85467 0.78328 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 2 C 0.18 3.13 2.88 -67.93 -0.20 2.93 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.49 16 4 C -0.09 -1.34 4.88 -27.89 -0.14 -1.47 16 5 C -0.03 -0.37 4.96 -104.53 -0.52 -0.89 16 6 C -0.09 -1.41 9.07 -39.64 -0.36 -1.77 16 7 C -0.06 -0.93 9.76 -39.17 -0.38 -1.31 16 8 C -0.05 -0.73 5.73 -106.93 -0.61 -1.34 16 9 C 0.27 4.01 15.33 -22.48 -0.34 3.66 16 10 N -0.44 -7.34 18.54 41.84 0.78 -6.56 16 11 C -0.07 -0.92 9.76 -39.17 -0.38 -1.31 16 12 C -0.13 -1.59 9.68 -39.64 -0.38 -1.97 16 13 N -0.72 -16.46 4.57 -53.43 -0.24 -16.71 16 14 C -0.23 -6.18 9.93 -15.06 -0.15 -6.33 16 15 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 16 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 17 N -0.93 -26.91 13.06 55.49 0.72 -26.18 16 18 Si 0.90 22.06 29.55 -169.99 -5.02 17.04 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 26 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 27 H 0.14 2.18 7.56 -52.49 -0.40 1.78 16 28 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.38 9.18 7.01 -40.82 -0.29 8.90 16 32 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 287.55 15.07 4.33 4.33 Total: -1.00 -29.48 287.55 -6.67 -36.14 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.02 Total: 4.49 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -3.21 Total: -12.55 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 1.26 Total: -49.46 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.48 -6.67 -36.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172290400.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.607 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds