Wall clock time and date at job start Sun Mar 29 2020 21:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47179 * 2 1 4 4 C 1.52999 * 109.47513 * 239.99929 * 2 1 3 5 5 C 1.50694 * 109.47391 * 174.99710 * 4 2 1 6 6 C 1.38364 * 119.84468 * 89.99970 * 5 4 2 7 7 C 1.37952 * 120.14850 * 179.69908 * 6 5 4 8 8 C 1.39628 * 119.84862 * 0.27863 * 7 6 5 9 9 C 1.43197 * 120.15234 * 180.02562 * 8 7 6 10 10 N 7.49814 * 167.88757 * 260.92854 * 2 1 3 11 11 C 1.39640 * 119.69807 * 359.97438 * 8 7 6 12 12 C 1.37944 * 119.84566 * 359.97438 * 11 8 7 13 13 N 1.46499 * 109.47321 * 119.99508 * 2 1 3 14 14 C 1.36936 * 120.00342 * 275.00219 * 13 2 1 15 15 H 1.07999 * 119.99970 * 359.97438 * 14 13 2 16 16 C 1.38813 * 120.00183 * 180.02562 * 14 13 2 17 17 N 1.31617 * 120.00069 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99873 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47229 * 60.00192 * 18 16 14 20 20 H 1.48498 * 109.47151 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47441 * 299.99808 * 18 16 14 22 22 H 1.08997 * 109.47163 * 60.00723 * 1 2 3 23 23 H 1.09004 * 109.46670 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47044 * 300.00098 * 1 2 3 25 25 H 1.08996 * 109.47115 * 54.99214 * 4 2 1 26 26 H 1.09001 * 109.46904 * 295.00359 * 4 2 1 27 27 H 1.08002 * 119.92862 * 359.97438 * 6 5 4 28 28 H 1.08000 * 120.07526 * 180.29834 * 7 6 5 29 29 H 1.07997 * 120.07565 * 179.97438 * 11 8 7 30 30 H 1.07998 * 119.92827 * 180.02562 * 12 11 8 31 31 H 0.97002 * 119.99529 * 95.00009 * 13 2 1 32 32 H 0.96992 * 120.00351 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 6 4.3268 -1.5841 -0.7137 7 6 5.7023 -1.4962 -0.7733 8 6 6.3020 -0.4229 -1.4350 9 6 7.7291 -0.3255 -1.5013 10 7 8.8612 -0.2481 -1.5537 11 6 5.5037 0.5546 -2.0328 12 6 4.1296 0.4537 -1.9665 13 7 2.0184 -0.6905 1.1962 14 6 2.1492 -0.0073 2.3758 15 1 1.8927 1.0406 2.4241 16 6 2.6124 -0.6615 3.5091 17 7 2.9255 -1.9385 3.4500 18 14 2.7901 0.2703 5.1182 19 1 1.4673 0.8059 5.5288 20 1 3.2992 -0.6480 6.1683 21 1 3.7444 1.3935 4.9371 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.6054 -0.2619 -2.1369 26 1 1.7517 -1.7715 -1.2055 27 1 3.8617 -2.4138 -0.2021 28 1 6.3138 -2.2560 -0.3095 29 1 5.9612 1.3875 -2.5458 30 1 3.5110 1.2087 -2.4287 31 1 2.2491 -1.6317 1.1526 32 1 3.2488 -2.3958 4.2419 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172290400.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:15 Heat of formation + Delta-G solvation = 36.539551 kcal Electronic energy + Delta-G solvation = -15128.085826 eV Core-core repulsion = 12666.839529 eV Total energy + Delta-G solvation = -2461.246297 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.46077 -37.99065 -37.07667 -34.46487 -32.55462 -31.88490 -30.36673 -27.75070 -25.68493 -23.60559 -23.34106 -21.23948 -19.78958 -19.15589 -16.84531 -16.57640 -16.26590 -15.46686 -15.38507 -15.31395 -14.98260 -14.35014 -14.29873 -13.97341 -13.84602 -13.55120 -13.16800 -12.98509 -12.73886 -12.65786 -12.46701 -12.19994 -11.91026 -11.77991 -11.59143 -11.48993 -10.85684 -9.80810 -9.51217 -8.86500 -7.85119 -5.09009 -0.08962 0.57527 1.49843 1.50545 1.55859 1.60153 1.98523 2.62192 2.90939 3.02394 3.49437 3.95442 4.01156 4.08863 4.13406 4.41472 4.56166 4.63019 4.73856 4.82087 4.93001 5.01623 5.16087 5.17356 5.25816 5.39742 5.45678 5.47616 5.61264 5.70109 5.84207 6.05138 6.38344 6.43639 7.45703 8.25220 8.47031 9.37852 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019976 B = 0.008224 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.354116 B = 3404.018408 C = 4348.334067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.169 3.831 3 H 0.046 0.954 4 C -0.085 4.085 5 C -0.036 4.036 6 C -0.111 4.111 7 C -0.074 4.074 8 C -0.059 4.059 9 C 0.284 3.716 10 N -0.472 5.472 11 C -0.065 4.065 12 C -0.120 4.120 13 N -0.730 5.730 14 C -0.224 4.224 15 H 0.070 0.930 16 C -0.072 4.072 17 N -0.964 5.964 18 Si 0.955 3.045 19 H -0.281 1.281 20 H -0.301 1.301 21 H -0.284 1.284 22 H 0.075 0.925 23 H 0.042 0.958 24 H 0.030 0.970 25 H 0.112 0.888 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.128 0.872 29 H 0.154 0.846 30 H 0.161 0.839 31 H 0.374 0.626 32 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 3.733 -13.525 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.123 4.123 5 C -0.037 4.037 6 C -0.129 4.129 7 C -0.094 4.094 8 C -0.063 4.063 9 C -0.029 4.029 10 N -0.148 5.148 11 C -0.085 4.085 12 C -0.137 4.137 13 N -0.370 5.370 14 C -0.357 4.357 15 H 0.088 0.912 16 C -0.264 4.264 17 N -0.616 5.616 18 Si 0.786 3.214 19 H -0.208 1.208 20 H -0.228 1.228 21 H -0.211 1.211 22 H 0.094 0.906 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.130 0.870 26 H 0.090 0.910 27 H 0.136 0.864 28 H 0.146 0.854 29 H 0.172 0.828 30 H 0.178 0.822 31 H 0.207 0.793 32 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 0.149 4.004 -13.493 14.075 hybrid contribution -0.054 -0.297 1.611 1.639 sum 0.095 3.707 -11.881 12.446 Atomic orbital electron populations 1.22317 0.97669 1.00912 1.00779 1.20482 0.92527 0.95296 0.85637 0.93636 1.21011 0.90231 1.02164 0.98897 1.20287 0.96578 0.93467 0.93371 1.21022 0.93034 1.00296 0.98570 1.21187 0.95272 0.96657 0.96316 1.16028 0.83492 0.99868 1.06908 1.25955 0.92821 0.92170 0.92001 1.81207 1.13063 1.09684 1.10863 1.21346 0.93572 0.96902 0.96672 1.21247 0.94254 0.98130 1.00097 1.42590 1.78185 1.10292 1.05978 1.19478 1.33825 0.93884 0.88487 0.91218 1.25290 1.03761 0.96735 1.00617 1.69753 1.53107 1.09781 1.28937 0.85481 0.77699 0.77442 0.80797 1.20782 1.22751 1.21086 0.90581 0.93854 0.95077 0.87023 0.90964 0.86442 0.85398 0.82840 0.82152 0.79337 0.94480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.75 9.49 71.98 0.68 -4.07 16 2 C 0.17 5.64 2.88 44.99 0.13 5.77 16 3 H 0.05 1.56 8.08 -2.39 -0.02 1.54 16 4 C -0.09 -2.15 4.88 29.85 0.15 -2.01 16 5 C -0.04 -0.97 4.96 -19.81 -0.10 -1.07 16 6 C -0.11 -3.41 9.07 22.23 0.20 -3.21 16 7 C -0.07 -2.15 9.76 22.54 0.22 -1.93 16 8 C -0.06 -1.58 5.73 -21.36 -0.12 -1.71 16 9 C 0.28 8.26 15.33 88.33 1.35 9.61 16 10 N -0.47 -15.43 18.54 19.00 0.35 -15.08 16 11 C -0.06 -1.42 9.76 22.54 0.22 -1.20 16 12 C -0.12 -2.59 9.68 22.23 0.22 -2.38 16 13 N -0.73 -33.03 4.57 -322.94 -1.48 -34.50 16 14 C -0.22 -11.76 9.93 84.03 0.83 -10.92 16 15 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 16 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 17 N -0.96 -56.78 13.06 21.65 0.28 -56.50 16 18 Si 0.95 45.64 29.55 68.60 2.03 47.67 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 21 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 22 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.11 1.98 8.08 -2.39 -0.02 1.96 16 26 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 27 H 0.12 3.96 7.56 -2.91 -0.02 3.93 16 28 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 29 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.37 18.17 7.01 -92.71 -0.65 17.52 16 32 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -63.44 287.55 5.91 -57.54 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.47 Total: 17.49 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: 4.25 Total: -16.61 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -0.84 Total: -106.08 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -63.44 5.91 -57.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172290400.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.075 kcal (2) G-P(sol) polarization free energy of solvation -63.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds