Wall clock time and date at job start Sun Mar 29 2020 21:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36940 * 120.00374 * 2 1 4 4 H 1.08007 * 119.99459 * 321.98097 * 3 2 1 5 5 C 1.38812 * 120.00153 * 141.97425 * 3 2 1 6 6 N 1.31615 * 119.99653 * 157.13530 * 5 3 2 7 7 Si 1.86799 * 119.99917 * 337.13191 * 5 3 2 8 8 H 1.48503 * 109.46679 * 95.67813 * 7 5 3 9 9 H 1.48502 * 109.46930 * 215.67362 * 7 5 3 10 10 H 1.48497 * 109.47250 * 335.67832 * 7 5 3 11 11 C 1.46500 * 119.99977 * 180.02562 * 2 1 3 12 12 C 1.50693 * 109.47399 * 89.99956 * 11 2 1 13 13 C 1.38834 * 119.74075 * 90.00194 * 12 11 2 14 14 C 1.37742 * 120.67013 * 179.97438 * 13 12 11 15 15 C 1.39132 * 119.78029 * 359.97438 * 14 13 12 16 16 N 1.37682 * 133.50859 * 179.97438 * 15 14 13 17 17 H 0.97002 * 125.06658 * 0.02562 * 16 15 14 18 18 C 1.36830 * 109.87267 * 180.26396 * 16 15 14 19 19 C 1.34243 * 109.92916 * 359.55189 * 18 16 15 20 20 C 1.40667 * 119.33010 * 359.97438 * 15 14 13 21 21 C 1.36628 * 119.73740 * 269.97545 * 12 11 2 22 22 H 1.08996 * 109.47133 * 265.62555 * 1 2 3 23 23 H 1.09001 * 109.47217 * 25.62565 * 1 2 3 24 24 H 1.08998 * 109.46954 * 145.62830 * 1 2 3 25 25 H 0.97003 * 120.00175 * 180.02562 * 6 5 3 26 26 H 1.09001 * 109.46894 * 329.99244 * 11 2 1 27 27 H 1.09005 * 109.46744 * 210.00145 * 11 2 1 28 28 H 1.08002 * 119.65948 * 359.97438 * 13 12 11 29 29 H 1.07999 * 120.11136 * 179.97438 * 14 13 12 30 30 H 1.07995 * 125.03758 * 179.71528 * 18 16 15 31 31 H 1.07999 * 126.50368 * 180.14173 * 19 18 16 32 32 H 1.08005 * 120.11133 * 0.04711 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7816 2.0220 -0.5761 5 6 3.3169 1.3134 0.7405 6 7 4.2030 2.2320 0.4192 7 14 3.6297 0.1814 2.1931 8 1 4.4688 -0.9635 1.7566 9 1 4.3347 0.9323 3.2629 10 1 2.3346 -0.3244 2.7145 11 6 2.1975 -1.2687 -0.0006 12 6 2.4486 -1.7032 -1.4215 13 6 3.6074 -1.2990 -2.0706 14 6 3.8566 -1.6854 -3.3691 15 6 2.9396 -2.4891 -4.0390 16 7 2.8993 -3.0289 -5.3049 17 1 3.5827 -2.9108 -5.9831 18 6 1.7492 -3.7526 -5.4657 19 6 1.0250 -3.7178 -4.3359 20 6 1.7675 -2.8968 -3.3765 21 6 1.5344 -2.4921 -2.0606 22 1 -0.3633 -0.0784 1.0246 23 1 -0.3634 0.9266 -0.4445 24 1 -0.3633 -0.8482 -0.5802 25 1 5.0188 2.3210 0.9364 26 1 1.6084 -2.0285 0.5131 27 1 3.1499 -1.1386 0.5134 28 1 4.3207 -0.6754 -1.5522 29 1 4.7608 -1.3654 -3.8655 30 1 1.4672 -4.2765 -6.3669 31 1 0.0731 -4.1994 -4.1679 32 1 0.6350 -2.8024 -1.5494 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205594810.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:34 Heat of formation + Delta-G solvation = 65.158066 kcal Electronic energy + Delta-G solvation = -15587.269755 eV Core-core repulsion = 13127.264450 eV Total energy + Delta-G solvation = -2460.005305 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.98852 -38.82271 -36.69523 -33.76641 -32.75970 -31.22757 -29.55153 -28.13616 -27.01295 -23.62317 -23.10207 -22.01035 -21.25543 -18.85589 -18.76197 -17.36965 -16.78636 -16.10839 -15.79173 -15.29375 -15.05152 -14.85989 -14.56787 -14.51923 -13.93624 -13.67571 -13.40147 -13.19251 -12.68932 -12.59514 -12.37717 -12.15378 -11.94087 -11.71639 -11.47623 -10.65082 -10.57581 -8.99112 -8.74130 -8.52382 -8.19101 -5.55944 0.31531 0.75107 1.31281 1.40902 1.52689 1.93745 2.36343 2.42947 2.91139 3.16514 3.63044 3.85733 4.08123 4.19498 4.33565 4.44188 4.55744 4.61722 4.72078 4.81636 4.91554 4.98905 5.08719 5.11784 5.18571 5.28815 5.59370 5.85070 5.91513 5.93738 5.98731 6.17753 6.35022 6.83231 6.99075 7.63308 8.07172 9.00465 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037261 B = 0.007874 C = 0.007245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.265522 B = 3554.974666 C = 3863.564996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.618 5.618 3 C -0.257 4.257 4 H 0.035 0.965 5 C -0.013 4.013 6 N -0.944 5.944 7 Si 0.936 3.064 8 H -0.274 1.274 9 H -0.305 1.305 10 H -0.258 1.258 11 C 0.171 3.829 12 C -0.121 4.121 13 C -0.098 4.098 14 C -0.137 4.137 15 C 0.070 3.930 16 N -0.590 5.590 17 H 0.427 0.573 18 C 0.066 3.934 19 C -0.232 4.232 20 C -0.131 4.131 21 C -0.077 4.077 22 H 0.021 0.979 23 H 0.037 0.963 24 H 0.056 0.944 25 H 0.263 0.737 26 H 0.073 0.927 27 H 0.039 0.961 28 H 0.096 0.904 29 H 0.130 0.870 30 H 0.216 0.784 31 H 0.162 0.838 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.440 -14.936 -10.710 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.342 5.342 3 C -0.386 4.386 4 H 0.053 0.947 5 C -0.210 4.210 6 N -0.588 5.588 7 Si 0.765 3.235 8 H -0.201 1.201 9 H -0.233 1.233 10 H -0.182 1.182 11 C 0.047 3.953 12 C -0.124 4.124 13 C -0.118 4.118 14 C -0.157 4.157 15 C -0.037 4.037 16 N -0.195 5.195 17 H 0.266 0.734 18 C -0.060 4.060 19 C -0.256 4.256 20 C -0.135 4.135 21 C -0.096 4.096 22 H 0.039 0.961 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.057 0.943 28 H 0.114 0.886 29 H 0.148 0.852 30 H 0.232 0.768 31 H 0.180 0.820 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.272 -14.847 -10.761 18.828 hybrid contribution 0.951 0.432 0.603 1.206 sum -3.321 -14.416 -10.158 17.945 Atomic orbital electron populations 1.21176 0.82228 1.00111 0.98521 1.44178 1.02257 1.01120 1.86629 1.18612 1.06355 0.91139 1.22542 0.94726 1.25984 0.96653 0.98360 0.99967 1.70010 1.09242 1.38821 1.40727 0.85958 0.78405 0.78466 0.80718 1.20101 1.23305 1.18228 1.20210 0.95956 0.87562 0.91619 1.20214 0.94975 0.98211 0.99035 1.20724 0.97670 0.98637 0.94744 1.20070 0.99870 1.01266 0.94517 1.18275 0.97565 1.00516 0.87330 1.41812 1.21280 1.45024 1.11346 0.73357 1.22481 0.85876 0.96931 1.00716 1.21973 1.03015 1.07471 0.93173 1.19617 0.96326 1.02645 0.94941 1.20187 0.98593 0.97641 0.93178 0.96086 0.94396 0.92583 0.92804 0.90865 0.94333 0.88596 0.85194 0.76762 0.82041 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.04 10.70 127.77 1.37 6.41 16 2 N -0.62 -30.57 2.45 -731.32 -1.79 -32.36 16 3 C -0.26 -15.10 9.88 84.03 0.83 -14.27 16 4 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 5 C -0.01 -0.76 5.29 84.86 0.45 -0.32 16 6 N -0.94 -59.73 13.97 21.65 0.30 -59.42 16 7 Si 0.94 47.06 25.10 68.60 1.72 48.78 16 8 H -0.27 -13.19 6.68 99.48 0.66 -12.53 16 9 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 10 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 11 C 0.17 7.67 4.64 85.63 0.40 8.07 16 12 C -0.12 -5.09 5.43 -20.10 -0.11 -5.20 16 13 C -0.10 -4.24 9.66 22.30 0.22 -4.02 16 14 C -0.14 -4.94 10.08 22.37 0.23 -4.71 16 15 C 0.07 2.26 7.28 39.03 0.28 2.54 16 16 N -0.59 -12.95 6.07 -187.61 -1.14 -14.08 16 17 H 0.43 6.41 8.96 -92.71 -0.83 5.58 16 18 C 0.07 1.21 11.82 83.00 0.98 2.19 16 19 C -0.23 -5.61 11.08 23.51 0.26 -5.35 16 20 C -0.13 -4.32 6.37 -20.20 -0.13 -4.45 16 21 C -0.08 -2.78 9.67 22.23 0.22 -2.56 16 22 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.04 1.56 8.00 -2.39 -0.02 1.54 16 24 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16 25 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 26 H 0.07 2.83 8.01 -2.39 -0.02 2.81 16 27 H 0.04 1.88 3.32 -2.38 -0.01 1.87 16 28 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 29 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 30 H 0.22 1.67 8.06 -2.91 -0.02 1.64 16 31 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 32 H 0.13 4.10 8.05 -2.91 -0.02 4.08 16 Total: -1.00 -72.80 271.56 4.33 -68.47 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.25 Total: 10.29 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 4.99 Total: -21.67 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -2.63 Total: -105.87 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.72 Total: 48.78 kcal Total: -72.80 4.33 -68.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205594810.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.626 kcal (2) G-P(sol) polarization free energy of solvation -72.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds