Wall clock time and date at job start Sun Mar 29 2020 21:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.50843 * 2 1 4 4 O 1.43366 * 109.63022 * 120.32010 * 2 1 3 5 5 C 1.44196 * 107.29049 * 119.20904 * 4 2 1 6 6 C 1.54913 * 103.07481 * 338.55869 * 5 4 2 7 7 H 1.09001 * 110.98052 * 277.45288 * 6 5 4 8 8 C 1.53003 * 110.97728 * 153.67005 * 6 5 4 9 9 O 1.42901 * 109.47162 * 175.00095 * 8 6 5 10 10 C 1.42898 * 113.99928 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.47058 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.46895 * 179.97438 * 11 10 9 13 13 H 1.07993 * 120.00507 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99787 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99820 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00215 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46524 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46945 * 120.00531 * 16 14 12 19 19 H 1.48495 * 109.47257 * 240.00529 * 16 14 12 20 20 O 1.43751 * 109.62884 * 239.67752 * 2 1 3 21 21 H 1.09004 * 109.47100 * 301.13629 * 1 2 3 22 22 H 1.08994 * 109.47215 * 61.13323 * 1 2 3 23 23 H 1.09005 * 109.47598 * 181.13607 * 1 2 3 24 24 H 1.09005 * 109.46577 * 178.86362 * 3 2 1 25 25 H 1.09003 * 109.47241 * 298.86282 * 3 2 1 26 26 H 1.08995 * 109.47400 * 58.86628 * 3 2 1 27 27 H 1.08998 * 110.69882 * 96.95579 * 5 4 2 28 28 H 1.09003 * 110.69198 * 220.16833 * 5 4 2 29 29 H 1.08999 * 109.47138 * 295.00052 * 8 6 5 30 30 H 1.08998 * 109.46919 * 54.99973 * 8 6 5 31 31 H 1.08997 * 109.47444 * 300.00144 * 10 9 8 32 32 H 1.08998 * 109.47176 * 60.00461 * 10 9 8 33 33 H 1.08997 * 109.47054 * 300.00313 * 11 10 9 34 34 H 1.08998 * 109.46807 * 60.00166 * 11 10 9 35 35 H 0.97002 * 119.99985 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 8 2.0116 -0.6817 1.1656 5 6 2.7884 -1.8089 0.7126 6 6 2.2651 -2.0392 -0.7272 7 1 1.3456 -2.6245 -0.7193 8 6 3.3309 -2.7092 -1.5968 9 8 2.7781 -3.0116 -2.8793 10 6 3.6964 -3.6428 -3.7739 11 6 3.0008 -3.9180 -5.1086 12 6 3.9695 -4.5831 -6.0521 13 1 4.9801 -4.7892 -5.7319 14 6 3.5653 -4.9293 -7.3241 15 7 2.3345 -4.6787 -7.7139 16 14 4.7658 -5.7543 -8.4935 17 1 6.0772 -5.9245 -7.8178 18 1 4.2368 -7.0843 -8.8889 19 1 4.9377 -4.9104 -9.7032 20 8 2.0129 -0.6836 -1.1687 21 1 -0.3633 0.5314 0.8797 22 1 -0.3633 0.4961 -0.8999 23 1 -0.3634 -1.0275 0.0204 24 1 3.1308 1.4414 0.0204 25 1 1.6947 1.9503 -0.9000 26 1 1.6615 1.9621 0.8796 27 1 3.8508 -1.5653 0.7019 28 1 2.5987 -2.6828 1.3358 29 1 4.1788 -2.0348 -1.7165 30 1 3.6638 -3.6302 -1.1183 31 1 4.5517 -2.9875 -3.9387 32 1 4.0374 -4.5831 -3.3408 33 1 2.1454 -4.5732 -4.9441 34 1 2.6602 -2.9775 -5.5414 35 1 2.0503 -4.9220 -8.6089 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205631015.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:57 Heat of formation + Delta-G solvation = -173.242085 kcal Electronic energy + Delta-G solvation = -16212.313700 eV Core-core repulsion = 13402.368918 eV Total energy + Delta-G solvation = -2809.944782 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.66509 -38.90662 -36.09008 -35.41131 -34.27688 -32.17978 -30.59414 -28.40233 -27.10633 -25.93083 -23.13420 -22.64990 -22.12661 -18.86163 -18.53340 -17.49857 -17.07596 -16.75031 -16.69979 -16.36658 -15.65639 -15.09077 -14.76694 -14.40012 -14.28358 -13.96587 -13.58001 -13.44402 -13.16071 -13.11460 -12.87528 -12.82511 -12.62351 -12.37621 -12.18813 -12.17906 -11.47532 -11.35924 -11.16868 -10.70483 -10.67069 -10.46401 -8.24296 -6.37942 1.41400 1.42744 1.56267 2.31716 2.35879 2.65743 2.89972 3.09750 3.68840 3.76294 3.83765 3.95578 4.01385 4.29243 4.33737 4.36900 4.45084 4.49593 4.59879 4.64116 4.73211 4.74994 4.83590 4.91174 4.97268 5.12171 5.20512 5.35531 5.55638 5.71443 6.08680 6.10121 6.36971 6.78449 7.32263 8.89219 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.056236 B = 0.004253 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.781000 B = 6582.332070 C = 6783.300256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.234 3.766 3 C -0.151 4.151 4 O -0.389 6.389 5 C 0.035 3.965 6 C 0.046 3.954 7 H 0.087 0.913 8 C 0.063 3.937 9 O -0.414 6.414 10 C 0.085 3.915 11 C 0.026 3.974 12 C -0.545 4.545 13 H 0.070 0.930 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.977 3.023 17 H -0.257 1.257 18 H -0.276 1.276 19 H -0.278 1.278 20 O -0.388 6.388 21 H 0.091 0.909 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.130 0.870 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.055 0.945 33 H -0.005 1.005 34 H -0.011 1.011 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.118 7.428 18.354 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.158 3.842 3 C -0.208 4.208 4 O -0.311 6.311 5 C -0.041 4.041 6 C -0.012 4.012 7 H 0.104 0.896 8 C -0.014 4.014 9 O -0.334 6.334 10 C 0.010 3.990 11 C -0.012 4.012 12 C -0.583 4.583 13 H 0.088 0.912 14 C -0.199 4.199 15 N -0.573 5.573 16 Si 0.800 3.200 17 H -0.180 1.180 18 H -0.202 1.202 19 H -0.203 1.203 20 O -0.310 6.310 21 H 0.110 0.890 22 H 0.095 0.905 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.148 0.852 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.013 0.987 34 H 0.008 0.992 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.802 7.621 18.171 19.721 hybrid contribution 0.312 -0.514 -0.930 1.107 sum 1.114 7.107 17.241 18.681 Atomic orbital electron populations 1.22376 0.92969 1.03277 1.04050 1.23709 0.93939 0.92163 0.74383 1.22080 1.02224 0.92462 1.04082 1.88842 1.69972 1.42424 1.29819 1.24242 0.97026 0.90338 0.92468 1.24049 0.99206 0.84169 0.93744 0.89560 1.22588 0.94991 0.99698 0.84084 1.87913 1.40113 1.80742 1.24625 1.22506 0.91474 0.95335 0.89719 1.18955 0.95829 0.95197 0.91174 1.21509 0.98452 1.39838 0.98497 0.91166 1.26083 0.97271 0.96346 1.00228 1.70145 1.19042 1.48387 1.19754 0.85224 0.78847 0.77871 0.78015 1.18044 1.20175 1.20333 1.89378 1.86188 1.22394 1.33019 0.89025 0.90541 0.92480 0.91864 0.90473 0.88749 0.89087 0.85177 0.92118 0.88918 0.93677 0.92721 0.98698 0.99209 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 9.19 71.98 0.66 -2.93 16 2 C 0.23 5.71 1.47 30.59 0.04 5.76 16 3 C -0.15 -3.02 9.24 71.98 0.66 -2.35 16 4 O -0.39 -9.06 10.87 -126.22 -1.37 -10.43 16 5 C 0.04 0.69 7.54 72.64 0.55 1.24 16 6 C 0.05 1.22 3.78 31.25 0.12 1.34 16 7 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 8 C 0.06 1.84 5.71 71.98 0.41 2.25 16 9 O -0.41 -17.30 10.34 -148.98 -1.54 -18.84 16 10 C 0.09 3.78 5.88 71.98 0.42 4.20 16 11 C 0.03 1.45 5.34 29.85 0.16 1.61 16 12 C -0.55 -31.53 9.11 25.60 0.23 -31.29 16 13 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 14 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 15 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 16 Si 0.98 44.13 29.54 68.60 2.03 46.15 16 17 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 O -0.39 -12.15 10.73 -126.06 -1.35 -13.50 16 21 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 22 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 24 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.09 1.54 8.03 -2.39 -0.02 1.52 16 28 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 34 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -70.79 296.87 2.81 -67.99 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.04 Total: 6.26 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: 3.73 Total: -19.79 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.28 Total: -57.84 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -4.26 Total: -42.77 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -70.79 2.81 -67.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205631015.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.257 kcal (2) G-P(sol) polarization free energy of solvation -70.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds