Wall clock time and date at job start Sun Mar 29 2020 21:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 O 1.42906 * 109.47101 * 180.02562 * 11 10 9 13 13 C 1.42897 * 114.00236 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47432 * 179.97438 * 13 12 11 15 15 H 1.08999 * 109.52429 * 55.12913 * 14 13 12 16 16 C 1.53138 * 109.52370 * 175.32776 * 14 13 12 17 17 O 1.43075 * 109.14906 * 175.21627 * 16 14 13 18 18 C 1.43075 * 113.59207 * 302.04328 * 17 16 14 19 19 C 1.53147 * 109.14813 * 57.95544 * 18 17 16 20 20 O 1.43075 * 109.15063 * 304.68480 * 19 18 17 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 25 25 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 26 26 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 27 27 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 28 28 H 1.09003 * 109.46895 * 299.99922 * 13 12 11 29 29 H 1.08998 * 109.46859 * 59.99334 * 13 12 11 30 30 H 1.09003 * 109.52351 * 295.11225 * 16 14 13 31 31 H 1.08998 * 109.52505 * 55.31233 * 16 14 13 32 32 H 1.09001 * 109.52678 * 298.05557 * 18 17 16 33 33 H 1.08998 * 109.52842 * 177.85606 * 18 17 16 34 34 H 1.09003 * 109.52264 * 184.78839 * 19 18 17 35 35 H 1.08997 * 109.57715 * 64.62138 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 8 6.0278 -3.9839 0.0219 13 6 7.4523 -4.0968 0.0280 14 6 7.8468 -5.5750 0.0326 15 1 7.3768 -6.0801 -0.8112 16 6 9.3692 -5.6988 -0.0784 17 8 9.7378 -7.0762 0.0388 18 6 9.3055 -7.6827 1.2604 19 6 7.7831 -7.5589 1.3714 20 8 7.4144 -6.1815 1.2542 21 1 -0.4849 0.8400 0.0004 22 1 3.8786 -0.6821 -0.8838 23 1 3.8711 -0.6785 0.8962 24 1 3.6545 -3.1486 0.9003 25 1 3.6618 -3.1522 -0.8796 26 1 5.9188 -2.1245 -0.8715 27 1 5.9108 -2.1211 0.9084 28 1 7.8588 -3.6146 -0.8611 29 1 7.8513 -3.6118 0.9189 30 1 9.6963 -5.3151 -1.0448 31 1 9.8404 -5.1262 0.7204 32 1 9.7746 -7.1769 2.1043 33 1 9.5865 -8.7359 1.2637 34 1 7.4559 -7.9426 2.3378 35 1 7.3109 -8.1317 0.5732 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205664663.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:50 Heat of formation + Delta-G solvation = -173.535125 kcal Electronic energy + Delta-G solvation = -15914.575065 eV Core-core repulsion = 13104.617575 eV Total energy + Delta-G solvation = -2809.957490 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.97613 -38.96615 -37.02859 -35.89228 -33.99975 -33.02154 -29.85556 -28.91342 -26.68251 -24.48615 -24.03667 -22.25333 -21.76545 -18.96877 -18.15594 -17.76195 -17.58066 -16.92208 -16.63960 -16.35877 -16.24875 -15.94875 -15.02505 -14.86829 -14.56261 -14.44017 -13.58333 -13.47111 -13.25777 -12.81443 -12.66126 -12.47265 -12.10307 -11.89378 -11.71967 -11.70145 -11.59009 -11.34845 -11.29151 -10.76935 -10.55208 -10.19507 -8.29711 -6.35377 1.37347 1.40229 1.52322 2.37248 2.50895 2.62671 2.82296 3.05204 3.65003 3.89824 3.93670 4.04544 4.13807 4.15769 4.27245 4.35178 4.41483 4.46287 4.55712 4.56652 4.68747 4.78453 4.84558 4.86793 4.89089 5.02979 5.44510 5.54686 5.63500 5.93778 6.04020 6.24609 6.32612 6.72811 7.29061 8.87527 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.067335 B = 0.003880 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.733199 B = 7214.715524 C = 7481.513469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.958 3.042 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.242 1.242 7 C -0.539 4.539 8 H 0.026 0.974 9 C -0.006 4.006 10 C -0.096 4.096 11 C 0.071 3.929 12 O -0.408 6.408 13 C 0.064 3.936 14 C 0.054 3.946 15 H 0.065 0.935 16 C 0.038 3.962 17 O -0.394 6.394 18 C 0.023 3.977 19 C 0.016 3.984 20 O -0.396 6.396 21 H 0.267 0.733 22 H 0.028 0.972 23 H 0.026 0.974 24 H 0.044 0.956 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.129 0.871 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.806 -11.140 1.144 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.781 3.219 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.165 1.165 7 C -0.577 4.577 8 H 0.044 0.956 9 C -0.044 4.044 10 C -0.134 4.134 11 C -0.005 4.005 12 O -0.328 6.328 13 C -0.012 4.012 14 C -0.004 4.004 15 H 0.083 0.917 16 C -0.039 4.039 17 O -0.313 6.313 18 C -0.054 4.054 19 C -0.060 4.060 20 O -0.316 6.316 21 H 0.076 0.924 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.146 0.854 34 H 0.138 0.862 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 23.543 -11.203 1.148 26.098 hybrid contribution -0.502 0.661 0.065 0.833 sum 23.041 -10.542 1.214 25.367 Atomic orbital electron populations 1.70084 1.08515 1.28338 1.52469 1.26130 0.95730 1.03923 0.93849 0.85543 0.79527 0.77446 0.79426 1.18796 1.20955 1.16494 1.21488 0.92211 0.93127 1.50890 0.95557 1.19436 0.93877 0.93867 0.97185 1.21277 0.93302 0.97832 1.01018 1.22558 0.94314 0.82637 1.01000 1.87909 1.21662 1.27583 1.95630 1.22593 0.81698 0.94391 1.02557 1.22860 0.95766 0.93864 0.87949 0.91703 1.23216 0.92060 0.83386 1.05217 1.88073 1.78077 1.24833 1.40325 1.23434 0.93898 1.00975 0.87068 1.23467 0.95803 0.82512 1.04254 1.88165 1.79080 1.25344 1.38975 0.92392 0.95372 0.95549 0.93685 0.93236 0.91695 0.92534 0.88972 0.91844 0.85355 0.90846 0.91364 0.85429 0.86160 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 2 C 0.00 0.01 5.47 84.66 0.46 0.47 16 3 Si 0.96 44.23 27.47 68.60 1.88 46.12 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 7 C -0.54 -32.28 9.66 25.60 0.25 -32.03 16 8 H 0.03 1.75 7.99 -2.91 -0.02 1.72 16 9 C -0.01 -0.30 4.04 29.85 0.12 -0.18 16 10 C -0.10 -4.07 5.52 30.59 0.17 -3.91 16 11 C 0.07 2.32 5.94 71.98 0.43 2.75 16 12 O -0.41 -13.42 10.31 -144.53 -1.49 -14.91 16 13 C 0.06 1.47 5.61 71.98 0.40 1.88 16 14 C 0.05 1.19 3.13 30.64 0.10 1.29 16 15 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 16 C 0.04 0.62 6.34 72.03 0.46 1.08 16 17 O -0.39 -7.41 10.85 -136.01 -1.48 -8.88 16 18 C 0.02 0.33 7.05 72.03 0.51 0.84 16 19 C 0.02 0.29 7.05 72.03 0.51 0.80 16 20 O -0.40 -10.30 10.46 -129.59 -1.36 -11.66 16 21 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 22 H 0.03 1.25 7.58 -2.38 -0.02 1.24 16 23 H 0.03 1.21 7.19 -2.39 -0.02 1.19 16 24 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 25 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -73.29 290.51 2.24 -71.04 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 0.98 Total: 6.17 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 3.40 Total: -27.02 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.30 Total: -60.86 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -4.32 Total: -35.45 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.12 kcal Total: -73.29 2.24 -71.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205664663.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.492 kcal (2) G-P(sol) polarization free energy of solvation -73.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds