Wall clock time and date at job start Sun Mar 29 2020 21:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99963 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00761 * 3 2 1 5 5 H 1.48508 * 109.47196 * 30.00757 * 3 2 1 6 6 H 1.48504 * 109.47051 * 150.00381 * 3 2 1 7 7 C 1.37876 * 120.00113 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99588 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 179.97438 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.42902 * 114.00186 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.46855 * 330.00024 * 13 12 11 15 15 C 1.52997 * 109.47303 * 209.99696 * 13 12 11 16 16 C 1.52993 * 109.47388 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47114 * 60.00220 * 16 15 13 18 18 C 1.53004 * 109.47068 * 300.00037 * 17 16 15 19 19 C 1.52996 * 109.46960 * 89.99675 * 13 12 11 20 20 H 1.09006 * 109.47596 * 60.00249 * 19 13 12 21 21 F 1.39905 * 109.47451 * 300.00012 * 19 13 12 22 22 H 0.97008 * 120.00167 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 24 24 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 25 25 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 26 26 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 29 29 H 1.09005 * 109.46981 * 300.00374 * 15 13 12 30 30 H 1.09007 * 109.47109 * 59.99851 * 15 13 12 31 31 H 1.08998 * 109.47525 * 180.02562 * 16 15 13 32 32 H 1.09007 * 109.46969 * 300.00346 * 16 15 13 33 33 H 1.08995 * 109.47430 * 59.99613 * 17 16 15 34 34 H 1.09000 * 109.47352 * 180.02562 * 17 16 15 35 35 H 1.08998 * 109.47139 * 179.97438 * 18 17 16 36 36 H 1.09007 * 109.47298 * 300.00048 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 8 6.0278 -3.9838 -0.0027 13 6 7.4524 -4.0966 -0.0033 14 1 7.8846 -3.2380 -0.5171 15 6 7.8619 -5.3821 -0.7249 16 6 9.3871 -5.5026 -0.7261 17 6 9.8966 -5.5430 0.7160 18 6 9.4871 -4.2574 1.4377 19 6 7.9613 -4.1372 1.4390 20 1 7.5291 -4.9958 1.9529 21 9 7.5869 -2.9617 2.0989 22 1 -0.4851 0.8401 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8744 -0.6801 -0.8912 25 1 3.6578 -3.1506 -0.8907 26 1 3.6585 -3.1501 0.8892 27 1 5.9156 -2.1223 0.8873 28 1 5.9141 -2.1230 -0.8927 29 1 7.4295 -6.2407 -0.2110 30 1 7.4993 -5.3533 -1.7525 31 1 9.6788 -6.4182 -1.2406 32 1 9.8190 -4.6439 -1.2402 33 1 9.4647 -6.4015 1.2301 34 1 10.9832 -5.6284 0.7152 35 1 9.8497 -4.2863 2.4652 36 1 9.9191 -3.3987 0.9236 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205672854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:53 Heat of formation + Delta-G solvation = -133.770858 kcal Electronic energy + Delta-G solvation = -16303.637183 eV Core-core repulsion = 13507.776790 eV Total energy + Delta-G solvation = -2795.860392 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.63423 -38.86127 -36.67771 -33.86130 -31.75873 -30.65569 -29.54460 -26.89589 -22.93796 -22.85905 -22.26728 -20.51438 -19.86168 -16.92253 -16.69283 -16.34813 -15.99689 -15.25336 -14.87012 -14.34643 -14.10280 -13.80014 -13.57673 -13.31774 -12.77014 -12.61358 -12.41613 -11.94020 -11.77489 -11.44068 -11.26528 -10.98877 -10.92388 -10.85575 -10.60981 -10.45053 -9.97705 -9.77064 -9.62591 -9.16276 -9.10285 -8.50584 -6.00908 -3.98853 3.33387 3.40537 3.45206 3.69535 4.27599 4.36005 4.48440 4.48694 4.65557 4.86436 4.90183 5.00483 5.09881 5.22499 5.32852 5.44871 5.51027 5.64517 5.67203 5.74886 5.75497 5.84907 5.91667 5.95473 6.08997 6.15288 6.55359 6.59155 6.92814 7.30516 7.45929 7.49092 7.82716 8.58063 9.04384 9.61311 11.12590 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.050334 B = 0.004849 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.153350 B = 5772.435914 C = 6010.623289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.099 4.099 11 C 0.055 3.945 12 O -0.378 6.378 13 C 0.066 3.934 14 H 0.067 0.933 15 C -0.115 4.115 16 C -0.120 4.120 17 C -0.118 4.118 18 C -0.145 4.145 19 C 0.069 3.931 20 H 0.088 0.912 21 F -0.209 7.209 22 H 0.263 0.737 23 H 0.017 0.983 24 H 0.012 0.988 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.743 -10.272 0.273 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.049 4.049 10 C -0.137 4.137 11 C -0.021 4.021 12 O -0.297 6.297 13 C 0.007 3.993 14 H 0.085 0.915 15 C -0.153 4.153 16 C -0.158 4.158 17 C -0.156 4.156 18 C -0.183 4.183 19 C 0.033 3.967 20 H 0.106 0.894 21 F -0.190 7.190 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.030 0.970 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 21.443 -10.275 0.293 23.779 hybrid contribution 0.460 1.281 0.077 1.363 sum 21.903 -8.995 0.369 23.681 Atomic orbital electron populations 1.69917 1.06284 1.26853 1.51263 1.25022 0.94741 0.99145 0.94584 0.86777 0.80423 0.83612 0.78492 1.20282 1.21334 1.18986 1.21117 0.89305 0.94584 1.50682 0.90904 1.19516 0.97321 0.91673 0.96345 1.21442 0.89920 1.00085 1.02208 1.22991 0.97348 0.81815 0.99972 1.87937 1.18440 1.28530 1.94814 1.22585 0.83671 0.99344 0.93699 0.91460 1.21566 0.95454 0.96803 1.01456 1.21569 0.94930 1.02542 0.96751 1.21512 1.01097 0.97229 0.95765 1.22147 0.94370 0.99559 1.02192 1.22268 0.95372 0.85239 0.93871 0.89409 1.92811 1.92781 1.50739 1.82654 0.92747 0.96451 0.97009 0.92124 0.91994 0.92679 0.93992 0.90707 0.90428 0.90979 0.91588 0.91348 0.91132 0.90570 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.52 13.96 55.43 0.77 -27.75 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 7 C -0.52 -15.36 9.66 -34.44 -0.33 -15.69 16 8 H 0.07 2.31 7.99 -52.48 -0.42 1.89 16 9 C -0.01 -0.28 4.04 -27.89 -0.11 -0.39 16 10 C -0.10 -2.14 5.52 -26.74 -0.15 -2.29 16 11 C 0.05 1.00 5.63 37.16 0.21 1.21 16 12 O -0.38 -6.40 9.98 -35.23 -0.35 -6.75 16 13 C 0.07 0.85 2.46 -26.73 -0.07 0.78 16 14 H 0.07 0.84 7.79 -51.93 -0.40 0.44 16 15 C -0.12 -1.14 5.57 -26.74 -0.15 -1.29 16 16 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 17 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 18 C -0.14 -1.27 5.66 -26.70 -0.15 -1.42 16 19 C 0.07 0.83 3.55 -26.70 -0.09 0.74 16 20 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 21 F -0.21 -3.23 15.27 2.25 0.03 -3.19 16 22 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 23 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 24 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 27 H 0.05 1.03 6.49 -51.93 -0.34 0.69 16 28 H 0.04 0.72 8.09 -51.93 -0.42 0.31 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 289.83 15.07 4.37 4.37 Total: -1.00 -32.03 289.83 -7.27 -39.30 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -6.16 Total: -5.07 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -1.26 Total: -18.49 kcal Atomic # 7 Polarization: -28.52 SS G_CDS: 0.77 Total: -27.75 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.35 Total: -6.75 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.03 Total: -3.19 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.03 -7.27 -39.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205672854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.468 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds