Wall clock time and date at job start Sun Mar 29 2020 21:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47606 * 180.02562 * 11 10 9 13 13 C 1.42904 * 114.00490 * 180.02562 * 12 11 10 14 14 H 1.09005 * 109.46708 * 329.99244 * 13 12 11 15 15 C 1.52991 * 109.47653 * 89.99796 * 13 12 11 16 16 C 1.52993 * 109.47659 * 180.02562 * 15 13 12 17 17 C 1.53008 * 109.46986 * 300.00237 * 16 15 13 18 18 C 1.52998 * 109.47303 * 59.99216 * 17 16 15 19 19 C 1.52997 * 109.47527 * 300.00808 * 18 17 16 20 20 H 1.08995 * 109.47252 * 180.02562 * 19 18 17 21 21 F 1.39904 * 109.46821 * 299.99864 * 19 18 17 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 28 28 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 29 29 H 1.09009 * 109.46951 * 300.00408 * 15 13 12 30 30 H 1.08997 * 109.47300 * 60.00073 * 15 13 12 31 31 H 1.08998 * 109.47887 * 179.97438 * 16 15 13 32 32 H 1.09005 * 109.47036 * 59.99243 * 16 15 13 33 33 H 1.09001 * 109.46942 * 299.99891 * 17 16 15 34 34 H 1.08994 * 109.47118 * 179.97438 * 17 16 15 35 35 H 1.08995 * 109.47181 * 180.02562 * 18 17 16 36 36 H 1.09010 * 109.46785 * 60.00579 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4086 -6.0733 0.0018 13 6 1.7941 -7.3634 0.0018 14 1 0.8342 -7.3085 0.5154 15 6 1.5752 -7.8242 -1.4405 16 6 0.9167 -9.2052 -1.4405 17 6 1.8244 -10.2031 -0.7184 18 6 2.0434 -9.7422 0.7240 19 6 2.7018 -8.3612 0.7239 20 1 2.8582 -8.0331 1.7515 21 9 3.9339 -8.4321 0.0649 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 0.8537 -5.0445 0.8914 28 1 0.8532 -5.0451 -0.8886 29 1 0.9281 -7.1135 -1.9548 30 1 2.5351 -7.8791 -1.9540 31 1 0.7603 -9.5333 -2.4681 32 1 -0.0433 -9.1499 -0.9270 33 1 2.7844 -10.2583 -1.2318 34 1 1.3551 -11.1868 -0.7180 35 1 2.6904 -10.4528 1.2382 36 1 1.0834 -9.6870 1.2374 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205672855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:56 Heat of formation + Delta-G solvation = -136.334186 kcal Electronic energy + Delta-G solvation = -16192.956395 eV Core-core repulsion = 13396.984849 eV Total energy + Delta-G solvation = -2795.971546 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.56459 -38.69204 -36.43008 -33.82233 -31.62108 -30.70190 -29.48568 -26.53446 -23.25927 -22.75401 -22.23304 -20.34954 -19.67980 -16.94749 -16.50513 -15.99329 -15.66640 -15.42793 -15.00239 -14.44066 -14.09932 -13.62112 -13.54299 -13.22445 -12.69684 -12.28462 -12.06631 -11.83734 -11.64459 -11.54322 -11.14892 -10.90758 -10.82096 -10.60859 -10.53984 -10.36396 -10.26438 -9.79481 -9.42127 -9.13675 -9.09484 -8.34889 -6.00279 -4.02339 3.33432 3.39232 3.43440 3.73113 4.37415 4.40818 4.47304 4.70639 4.71372 4.95138 5.04474 5.11328 5.16181 5.24548 5.35866 5.52199 5.57115 5.70955 5.76845 5.78184 5.82781 5.92456 6.01319 6.10859 6.20198 6.26739 6.69528 6.73582 7.10153 7.54251 7.66857 7.78936 7.99375 8.42555 9.04312 9.61758 11.11332 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.060393 B = 0.004245 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.522062 B = 6594.768242 C = 6814.907248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.061 3.939 12 O -0.378 6.378 13 C 0.064 3.936 14 H 0.072 0.928 15 C -0.144 4.144 16 C -0.118 4.118 17 C -0.123 4.123 18 C -0.144 4.144 19 C 0.098 3.902 20 H 0.086 0.914 21 F -0.205 7.205 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.058 -20.044 0.159 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.014 4.014 12 O -0.298 6.298 13 C 0.005 3.995 14 H 0.090 0.910 15 C -0.181 4.181 16 C -0.156 4.156 17 C -0.160 4.160 18 C -0.182 4.182 19 C 0.062 3.938 20 H 0.104 0.896 21 F -0.186 7.186 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.135 -19.891 0.148 19.924 hybrid contribution 0.120 0.963 -0.037 0.971 sum 1.256 -18.928 0.111 18.970 Atomic orbital electron populations 1.69965 1.06084 1.26636 1.50956 1.25023 0.94867 0.99312 0.95278 0.86561 0.79858 0.83280 0.78132 1.20632 1.21221 1.19806 1.21230 0.93165 0.90855 1.50507 0.92504 1.19049 0.93908 0.91094 0.97299 1.21654 0.99654 0.91653 1.01590 1.22870 0.92167 0.86990 0.99408 1.87994 1.34054 1.12751 1.94964 1.22577 0.95964 0.84824 0.96133 0.90965 1.22011 1.02266 0.96746 0.97123 1.21525 0.98606 0.94586 1.00853 1.21540 1.00732 0.98693 0.95044 1.22135 1.01855 0.95631 0.98566 1.21643 0.80440 0.95467 0.96268 0.89617 1.92799 1.45158 1.97352 1.83251 0.92994 0.96493 0.96501 0.92525 0.92575 0.93799 0.93755 0.91113 0.90545 0.91427 0.91831 0.91177 0.91490 0.90402 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.37 5.52 -26.74 -0.15 -2.52 16 11 C 0.06 1.13 5.75 37.15 0.21 1.34 16 12 O -0.38 -6.64 9.93 -35.23 -0.35 -6.99 16 13 C 0.06 0.85 2.42 -26.74 -0.06 0.79 16 14 H 0.07 0.86 7.79 -51.93 -0.40 0.46 16 15 C -0.14 -1.75 5.41 -26.74 -0.14 -1.90 16 16 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 17 C -0.12 -1.05 5.80 -26.73 -0.16 -1.21 16 18 C -0.14 -1.25 5.72 -26.73 -0.15 -1.40 16 19 C 0.10 1.17 3.80 -26.73 -0.10 1.07 16 20 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 21 F -0.20 -3.01 15.99 2.25 0.04 -2.97 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.04 0.76 8.09 -51.93 -0.42 0.34 16 28 H 0.04 0.78 7.87 -51.93 -0.41 0.38 16 29 H 0.07 0.89 7.87 -51.92 -0.41 0.48 16 30 H 0.08 1.03 7.80 -51.93 -0.41 0.62 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.67 7.80 -51.93 -0.41 0.27 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.59 8.14 -51.92 -0.42 0.16 16 LS Contribution 294.64 15.07 4.44 4.44 Total: -1.00 -31.14 294.64 -7.64 -38.79 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -6.22 Total: -5.35 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -1.26 Total: -18.39 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.35 Total: -6.99 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.14 -7.64 -38.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205672855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.549 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds