Wall clock time and date at job start Sun Mar 29 2020 21:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.42895 * 109.47606 * 180.02562 * 11 10 9 13 13 C 1.42904 * 114.00490 * 180.02562 * 12 11 10 14 14 H 1.09005 * 109.46708 * 329.99244 * 13 12 11 15 15 C 1.52991 * 109.47653 * 89.99796 * 13 12 11 16 16 C 1.52993 * 109.47659 * 180.02562 * 15 13 12 17 17 C 1.53008 * 109.46986 * 300.00237 * 16 15 13 18 18 C 1.52998 * 109.47303 * 59.99216 * 17 16 15 19 19 C 1.52997 * 109.47527 * 300.00808 * 18 17 16 20 20 H 1.08995 * 109.47252 * 180.02562 * 19 18 17 21 21 F 1.39904 * 109.46821 * 299.99864 * 19 18 17 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 28 28 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 29 29 H 1.09009 * 109.46951 * 300.00408 * 15 13 12 30 30 H 1.08997 * 109.47300 * 60.00073 * 15 13 12 31 31 H 1.08998 * 109.47887 * 179.97438 * 16 15 13 32 32 H 1.09005 * 109.47036 * 59.99243 * 16 15 13 33 33 H 1.09001 * 109.46942 * 299.99891 * 17 16 15 34 34 H 1.08994 * 109.47118 * 179.97438 * 17 16 15 35 35 H 1.08995 * 109.47181 * 180.02562 * 18 17 16 36 36 H 1.09010 * 109.46785 * 60.00579 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4086 -6.0733 0.0018 13 6 1.7941 -7.3634 0.0018 14 1 0.8342 -7.3085 0.5154 15 6 1.5752 -7.8242 -1.4405 16 6 0.9167 -9.2052 -1.4405 17 6 1.8244 -10.2031 -0.7184 18 6 2.0434 -9.7422 0.7240 19 6 2.7018 -8.3612 0.7239 20 1 2.8582 -8.0331 1.7515 21 9 3.9339 -8.4321 0.0649 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.8718 -3.6044 -0.8895 26 1 2.8718 -3.6044 0.8904 27 1 0.8537 -5.0445 0.8914 28 1 0.8532 -5.0451 -0.8886 29 1 0.9281 -7.1135 -1.9548 30 1 2.5351 -7.8791 -1.9540 31 1 0.7603 -9.5333 -2.4681 32 1 -0.0433 -9.1499 -0.9270 33 1 2.7844 -10.2583 -1.2318 34 1 1.3551 -11.1868 -0.7180 35 1 2.6904 -10.4528 1.2382 36 1 1.0834 -9.6870 1.2374 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205672855.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:55 Heat of formation + Delta-G solvation = -153.951923 kcal Electronic energy + Delta-G solvation = -16193.720358 eV Core-core repulsion = 13396.984849 eV Total energy + Delta-G solvation = -2796.735509 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.60836 -39.81781 -37.52422 -35.79936 -33.55791 -31.51893 -30.59140 -28.41177 -25.00306 -23.67785 -23.23886 -22.11338 -20.64363 -18.60516 -17.95133 -17.23660 -16.89002 -16.57560 -16.45855 -16.12450 -15.19228 -14.78978 -14.62912 -14.33599 -14.19679 -13.94034 -13.47253 -13.18478 -12.88074 -12.69736 -12.58346 -12.49836 -12.26506 -11.96205 -11.75768 -11.60836 -11.53782 -11.32391 -11.26363 -11.10066 -10.57404 -10.38386 -8.22570 -6.33594 1.40076 1.41433 1.52928 2.38436 2.57362 3.10871 3.51153 3.56458 3.80211 3.89784 4.09186 4.10697 4.18299 4.21870 4.32456 4.38692 4.46488 4.57141 4.75548 4.79911 4.87920 4.93018 5.02493 5.09170 5.11921 5.15029 5.22358 5.30178 5.45009 5.47983 5.67555 5.80684 6.16557 6.29696 6.81652 7.35630 8.89498 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.060393 B = 0.004245 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.522062 B = 6594.768242 C = 6814.907248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.098 4.098 11 C 0.074 3.926 12 O -0.400 6.400 13 C 0.054 3.946 14 H 0.091 0.909 15 C -0.143 4.143 16 C -0.113 4.113 17 C -0.122 4.122 18 C -0.137 4.137 19 C 0.090 3.910 20 H 0.091 0.909 21 F -0.224 7.224 22 H 0.265 0.735 23 H -0.001 1.001 24 H -0.003 1.003 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.997 -20.972 0.557 21.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.136 4.136 11 C -0.002 4.002 12 O -0.320 6.320 13 C -0.004 4.004 14 H 0.109 0.891 15 C -0.181 4.181 16 C -0.151 4.151 17 C -0.160 4.160 18 C -0.175 4.175 19 C 0.053 3.947 20 H 0.109 0.891 21 F -0.205 7.205 22 H 0.074 0.926 23 H 0.018 0.982 24 H 0.016 0.984 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.080 -20.841 0.543 20.876 hybrid contribution 0.129 1.211 -0.164 1.229 sum 1.209 -19.629 0.379 19.670 Atomic orbital electron populations 1.70080 1.07707 1.27923 1.51428 1.25958 0.95820 1.03298 0.94507 0.85426 0.78636 0.78307 0.78565 1.19710 1.20394 1.18926 1.21652 0.93530 0.92357 1.51007 0.92441 1.18918 0.94168 0.92365 0.95401 1.21404 0.98670 0.92407 1.01076 1.22550 0.91607 0.85905 1.00162 1.87942 1.34676 1.14163 1.95200 1.22927 0.97060 0.83077 0.97362 0.89093 1.22000 1.01406 0.98643 0.96065 1.21526 0.99017 0.92648 1.01903 1.21559 1.00066 0.99670 0.94671 1.22152 1.02811 0.93464 0.99046 1.21936 0.79591 0.97178 0.95965 0.89062 1.92760 1.46578 1.97515 1.83694 0.92602 0.98213 0.98449 0.93173 0.92852 0.92706 0.93317 0.91932 0.92532 0.90536 0.90329 0.92653 0.89032 0.89071 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -32.08 9.11 25.60 0.23 -31.84 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.55 4.97 29.85 0.15 1.69 16 10 C -0.10 -4.36 5.52 30.59 0.17 -4.19 16 11 C 0.07 2.70 5.75 71.98 0.41 3.11 16 12 O -0.40 -13.93 9.93 -148.98 -1.48 -15.41 16 13 C 0.05 1.37 2.42 30.59 0.07 1.45 16 14 H 0.09 1.98 7.79 -2.38 -0.02 1.96 16 15 C -0.14 -3.39 5.41 30.59 0.17 -3.22 16 16 C -0.11 -1.84 5.92 30.59 0.18 -1.66 16 17 C -0.12 -1.78 5.80 30.60 0.18 -1.61 16 18 C -0.14 -1.99 5.72 30.59 0.17 -1.81 16 19 C 0.09 2.01 3.80 30.59 0.12 2.13 16 20 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 21 F -0.22 -6.53 15.99 44.97 0.72 -5.81 16 22 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 23 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 24 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 25 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.05 1.87 8.09 -2.39 -0.02 1.85 16 28 H 0.05 1.72 7.87 -2.39 -0.02 1.70 16 29 H 0.06 1.55 7.87 -2.38 -0.02 1.53 16 30 H 0.06 1.54 7.80 -2.39 -0.02 1.52 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.05 0.98 7.80 -2.39 -0.02 0.96 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -66.99 294.64 4.89 -62.10 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: 1.02 Total: 4.20 kcal Atomic # 6 Polarization: -37.69 SS G_CDS: 2.32 Total: -35.37 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 0.28 Total: -56.57 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -1.48 Total: -15.41 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.72 Total: -5.81 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.99 4.89 -62.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205672855.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.849 kcal (2) G-P(sol) polarization free energy of solvation -66.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds