Wall clock time and date at job start Sun Mar 29 2020 21:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.42907 * 113.99838 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.46616 * 329.99843 * 13 12 11 15 15 C 1.52996 * 109.47136 * 89.99874 * 13 12 11 16 16 C 1.52992 * 109.47320 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47209 * 300.00081 * 16 15 13 18 18 C 1.52996 * 109.47046 * 59.99751 * 17 16 15 19 19 C 1.52999 * 109.47148 * 210.00058 * 13 12 11 20 20 H 1.08998 * 109.46817 * 299.99824 * 19 13 12 21 21 F 1.39899 * 109.47322 * 59.99740 * 19 13 12 22 22 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 28 28 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 29 29 H 1.09007 * 109.46910 * 300.00225 * 15 13 12 30 30 H 1.08998 * 109.47260 * 59.99912 * 15 13 12 31 31 H 1.09002 * 109.47547 * 179.97438 * 16 15 13 32 32 H 1.08998 * 109.47118 * 59.99712 * 16 15 13 33 33 H 1.08998 * 109.46779 * 299.99839 * 17 16 15 34 34 H 1.08997 * 109.46894 * 179.97438 * 17 16 15 35 35 H 1.09000 * 109.47201 * 180.02562 * 18 17 16 36 36 H 1.08999 * 109.47393 * 59.99848 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 8 6.0280 -3.9837 0.0040 13 6 7.4526 -4.0965 0.0046 14 1 7.8852 -3.2381 -0.5093 15 6 7.9604 -4.1364 1.4472 16 6 9.4856 -4.2565 1.4479 17 6 9.8963 -5.5421 0.7269 18 6 9.3885 -5.5022 -0.7157 19 6 7.8627 -5.3822 -0.7162 20 1 7.4300 -6.2406 -0.2023 21 9 7.3983 -5.3458 -2.0354 22 1 -0.4849 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6587 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8925 27 1 5.9157 -2.1230 -0.8865 28 1 5.9143 -2.1221 0.8934 29 1 7.6682 -3.2203 1.9608 30 1 7.5278 -4.9948 1.9611 31 1 9.8475 -4.2845 2.4757 32 1 9.9179 -3.3979 0.9342 33 1 9.4640 -6.4007 1.2407 34 1 10.9829 -5.6274 0.7270 35 1 9.6806 -6.4182 -1.2293 36 1 9.8207 -4.6435 -1.2295 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205672856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:58 Heat of formation + Delta-G solvation = -134.206646 kcal Electronic energy + Delta-G solvation = -16191.609852 eV Core-core repulsion = 13395.730562 eV Total energy + Delta-G solvation = -2795.879289 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.58850 -38.95668 -36.64574 -33.88794 -31.76599 -30.62535 -29.58302 -26.96244 -23.22095 -22.58051 -22.27690 -20.50338 -19.95493 -16.93490 -16.74108 -16.26215 -15.68261 -15.34815 -15.17869 -14.35568 -14.12908 -13.77446 -13.62274 -13.24091 -13.03341 -12.63683 -12.42665 -11.84621 -11.71490 -11.41658 -11.33234 -11.09794 -10.84545 -10.81472 -10.62651 -10.41865 -9.98674 -9.82918 -9.64844 -9.23780 -9.18007 -8.52755 -6.02815 -4.00996 3.31340 3.38343 3.41515 3.62156 4.29825 4.31031 4.45955 4.57961 4.65616 4.84871 4.86813 5.02566 5.04618 5.25342 5.30642 5.43671 5.47149 5.61594 5.65198 5.67673 5.75657 5.78608 5.92199 5.96003 6.04776 6.12634 6.52448 6.54498 6.88995 7.27378 7.42030 7.46217 7.80278 8.56041 9.02655 9.59092 11.10713 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.046421 B = 0.004690 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.034153 B = 5968.248627 C = 6223.718809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.100 4.100 11 C 0.061 3.939 12 O -0.377 6.377 13 C 0.064 3.936 14 H 0.067 0.933 15 C -0.141 4.141 16 C -0.121 4.121 17 C -0.118 4.118 18 C -0.143 4.143 19 C 0.097 3.903 20 H 0.088 0.912 21 F -0.208 7.208 22 H 0.263 0.737 23 H 0.016 0.984 24 H 0.012 0.988 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.790 -9.391 1.838 23.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.138 4.138 11 C -0.015 4.015 12 O -0.297 6.297 13 C 0.005 3.995 14 H 0.085 0.915 15 C -0.179 4.179 16 C -0.159 4.159 17 C -0.156 4.156 18 C -0.181 4.181 19 C 0.061 3.939 20 H 0.106 0.894 21 F -0.189 7.189 22 H 0.073 0.927 23 H 0.034 0.966 24 H 0.030 0.970 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 21.487 -9.424 1.805 23.532 hybrid contribution 0.446 1.203 -0.088 1.286 sum 21.933 -8.221 1.717 23.486 Atomic orbital electron populations 1.69915 1.06284 1.26871 1.51171 1.25029 0.94745 0.99141 0.94586 0.86770 0.80309 0.83628 0.78518 1.20251 1.21338 1.19093 1.21113 0.89285 0.94612 1.50746 0.90875 1.19518 0.97394 0.91627 0.96290 1.21458 0.89807 1.00103 1.02418 1.22860 0.97455 0.81810 0.99341 1.87955 1.18484 1.28303 1.94925 1.22599 0.83718 0.97409 0.95726 0.91465 1.22023 0.95520 1.03669 0.96680 1.21560 0.95383 0.97934 1.00980 1.21512 1.01038 0.98520 0.94521 1.22142 0.93805 1.03732 0.98457 1.21682 0.94274 0.99270 0.78722 0.89368 1.92828 1.90321 1.97783 1.37919 0.92722 0.96570 0.96955 0.91888 0.91956 0.93758 0.93813 0.90824 0.90675 0.91201 0.91674 0.91327 0.91103 0.90304 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 8 H 0.07 2.30 7.99 -52.49 -0.42 1.89 16 9 C -0.01 -0.27 4.04 -27.89 -0.11 -0.38 16 10 C -0.10 -2.13 5.52 -26.73 -0.15 -2.27 16 11 C 0.06 1.08 5.75 37.16 0.21 1.29 16 12 O -0.38 -6.39 9.93 -35.23 -0.35 -6.74 16 13 C 0.06 0.83 2.36 -26.73 -0.06 0.77 16 14 H 0.07 0.85 7.79 -51.93 -0.40 0.44 16 15 C -0.14 -1.47 5.54 -26.74 -0.15 -1.61 16 16 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 17 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 18 C -0.14 -1.21 5.66 -26.71 -0.15 -1.36 16 19 C 0.10 1.14 3.55 -26.71 -0.09 1.04 16 20 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 21 F -0.21 -3.11 17.02 2.25 0.04 -3.07 16 22 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 23 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 24 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 25 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 28 H 0.04 0.71 7.87 -51.93 -0.41 0.31 16 29 H 0.07 0.80 7.87 -51.93 -0.41 0.39 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 292.63 15.07 4.41 4.41 Total: -1.00 -31.82 292.63 -7.27 -39.09 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -6.22 Total: -5.14 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -1.25 Total: -18.30 kcal Atomic # 7 Polarization: -28.32 SS G_CDS: 0.77 Total: -27.55 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.35 Total: -6.74 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.04 Total: -3.07 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.82 -7.27 -39.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205672856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.114 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds