Wall clock time and date at job start Sun Mar 29 2020 21:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.42907 * 113.99838 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.46616 * 329.99843 * 13 12 11 15 15 C 1.52996 * 109.47136 * 89.99874 * 13 12 11 16 16 C 1.52992 * 109.47320 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47209 * 300.00081 * 16 15 13 18 18 C 1.52996 * 109.47046 * 59.99751 * 17 16 15 19 19 C 1.52999 * 109.47148 * 210.00058 * 13 12 11 20 20 H 1.08998 * 109.46817 * 299.99824 * 19 13 12 21 21 F 1.39899 * 109.47322 * 59.99740 * 19 13 12 22 22 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 28 28 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 29 29 H 1.09007 * 109.46910 * 300.00225 * 15 13 12 30 30 H 1.08998 * 109.47260 * 59.99912 * 15 13 12 31 31 H 1.09002 * 109.47547 * 179.97438 * 16 15 13 32 32 H 1.08998 * 109.47118 * 59.99712 * 16 15 13 33 33 H 1.08998 * 109.46779 * 299.99839 * 17 16 15 34 34 H 1.08997 * 109.46894 * 179.97438 * 17 16 15 35 35 H 1.09000 * 109.47201 * 180.02562 * 18 17 16 36 36 H 1.08999 * 109.47393 * 59.99848 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 8 6.0280 -3.9837 0.0040 13 6 7.4526 -4.0965 0.0046 14 1 7.8852 -3.2381 -0.5093 15 6 7.9604 -4.1364 1.4472 16 6 9.4856 -4.2565 1.4479 17 6 9.8963 -5.5421 0.7269 18 6 9.3885 -5.5022 -0.7157 19 6 7.8627 -5.3822 -0.7162 20 1 7.4300 -6.2406 -0.2023 21 9 7.3983 -5.3458 -2.0354 22 1 -0.4849 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6587 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8925 27 1 5.9157 -2.1230 -0.8865 28 1 5.9143 -2.1221 0.8934 29 1 7.6682 -3.2203 1.9608 30 1 7.5278 -4.9948 1.9611 31 1 9.8475 -4.2845 2.4757 32 1 9.9179 -3.3979 0.9342 33 1 9.4640 -6.4007 1.2407 34 1 10.9829 -5.6274 0.7270 35 1 9.6806 -6.4182 -1.2293 36 1 9.8207 -4.6435 -1.2295 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205672856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:58 Heat of formation + Delta-G solvation = -153.290489 kcal Electronic energy + Delta-G solvation = -16192.437389 eV Core-core repulsion = 13395.730562 eV Total energy + Delta-G solvation = -2796.706827 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.64092 -39.96539 -37.68970 -35.79426 -33.77228 -31.37116 -30.61921 -28.72918 -24.73834 -23.53611 -23.24722 -22.01794 -21.03094 -18.97819 -17.94570 -17.29367 -16.88634 -16.56773 -16.25524 -16.03201 -15.34742 -14.85159 -14.62628 -14.57434 -14.29729 -14.21299 -13.57004 -13.47641 -12.96174 -12.60981 -12.52694 -12.16070 -12.03966 -11.92894 -11.77844 -11.71046 -11.54567 -11.42975 -11.32890 -11.19917 -10.78207 -10.42527 -8.30773 -6.36462 1.36191 1.38516 1.50600 2.35905 2.51385 3.04079 3.44587 3.53785 3.80494 3.84177 4.07814 4.08593 4.15545 4.17873 4.27188 4.35550 4.50864 4.53837 4.69840 4.74624 4.81905 4.86633 5.00586 5.04567 5.08956 5.14476 5.23289 5.26440 5.40994 5.44814 5.51860 5.61839 6.19857 6.28446 6.71371 7.28053 8.86405 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.046421 B = 0.004690 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.034153 B = 5968.248627 C = 6223.718809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.242 1.242 7 C -0.539 4.539 8 H 0.027 0.973 9 C -0.006 4.006 10 C -0.095 4.095 11 C 0.073 3.927 12 O -0.402 6.402 13 C 0.056 3.944 14 H 0.071 0.929 15 C -0.137 4.137 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.136 4.136 19 C 0.088 3.912 20 H 0.090 0.910 21 F -0.230 7.230 22 H 0.268 0.732 23 H 0.028 0.972 24 H 0.023 0.977 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.029 -8.537 2.368 26.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.194 4.194 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.165 1.165 7 C -0.577 4.577 8 H 0.046 0.954 9 C -0.044 4.044 10 C -0.133 4.133 11 C -0.003 4.003 12 O -0.322 6.322 13 C -0.002 4.002 14 H 0.089 0.911 15 C -0.175 4.175 16 C -0.154 4.154 17 C -0.152 4.152 18 C -0.174 4.174 19 C 0.051 3.949 20 H 0.108 0.892 21 F -0.211 7.211 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 24.748 -8.597 2.336 26.303 hybrid contribution -0.638 0.815 -0.258 1.066 sum 24.111 -7.782 2.078 25.420 Atomic orbital electron populations 1.70078 1.08460 1.28344 1.52402 1.26092 0.95702 1.03802 0.93820 0.85572 0.79567 0.77635 0.79357 1.19028 1.20745 1.16540 1.21462 0.92078 0.93193 1.50957 0.95424 1.19432 0.94016 0.93842 0.97074 1.21276 0.92958 0.97912 1.01163 1.22577 0.94508 0.82691 1.00562 1.87901 1.21359 1.27657 1.95239 1.22914 0.81433 0.98160 0.97686 0.91135 1.22005 0.97578 1.03338 0.94613 1.21566 0.93067 0.98617 1.02194 1.21530 1.02317 0.98219 0.93142 1.22132 0.90888 1.04465 0.99906 1.22000 0.96716 0.98780 0.77367 0.89172 1.92782 1.90859 1.97830 1.39605 0.92360 0.95350 0.95847 0.93569 0.92966 0.92972 0.92039 0.91304 0.90934 0.89663 0.91201 0.90879 0.88945 0.89156 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 2 C 0.00 0.15 5.47 84.65 0.46 0.61 16 3 Si 0.96 44.52 27.47 68.60 1.88 46.40 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 7 C -0.54 -32.38 9.66 25.60 0.25 -32.14 16 8 H 0.03 1.84 7.99 -2.91 -0.02 1.81 16 9 C -0.01 -0.30 4.04 29.85 0.12 -0.18 16 10 C -0.10 -4.07 5.52 30.59 0.17 -3.90 16 11 C 0.07 2.47 5.75 71.98 0.41 2.88 16 12 O -0.40 -13.35 9.93 -148.98 -1.48 -14.83 16 13 C 0.06 1.36 2.36 30.59 0.07 1.44 16 14 H 0.07 1.65 7.79 -2.39 -0.02 1.63 16 15 C -0.14 -2.58 5.54 30.59 0.17 -2.41 16 16 C -0.12 -1.44 5.92 30.59 0.18 -1.26 16 17 C -0.11 -1.20 5.92 30.60 0.18 -1.02 16 18 C -0.14 -1.95 5.66 30.61 0.17 -1.78 16 19 C 0.09 1.95 3.55 30.61 0.11 2.05 16 20 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 21 F -0.23 -6.78 17.02 44.97 0.77 -6.02 16 22 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 23 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 24 H 0.02 1.08 7.57 -2.39 -0.02 1.06 16 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 28 H 0.06 1.87 7.87 -2.39 -0.02 1.85 16 29 H 0.07 1.35 7.87 -2.38 -0.02 1.33 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.09 292.63 4.73 -65.35 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 0.97 Total: 5.64 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 2.30 Total: -35.70 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: 0.30 Total: -60.84 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -1.48 Total: -14.83 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.77 Total: -6.02 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -70.09 4.73 -65.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205672856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.938 kcal (2) G-P(sol) polarization free energy of solvation -70.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds