Wall clock time and date at job start Sun Mar 29 2020 21:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00191 * 2 1 4 4 H 1.48507 * 109.47037 * 240.00317 * 3 2 1 5 5 H 1.48498 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47291 * 120.00138 * 3 2 1 7 7 C 1.37880 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47189 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47341 * 179.97438 * 10 9 7 12 12 O 1.42893 * 109.47098 * 179.97438 * 11 10 9 13 13 C 1.42905 * 113.99968 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47108 * 30.00240 * 13 12 11 15 15 C 1.52997 * 109.46921 * 270.00062 * 13 12 11 16 16 C 1.53006 * 109.47164 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47127 * 59.99836 * 16 15 13 18 18 C 1.53000 * 109.47060 * 300.00449 * 17 16 15 19 19 C 1.52996 * 109.47328 * 60.00126 * 18 17 16 20 20 H 1.09004 * 109.47108 * 179.97438 * 19 18 17 21 21 F 1.39891 * 109.47275 * 59.99710 * 19 18 17 22 22 H 0.97010 * 120.00231 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46825 * 59.99647 * 9 7 2 24 24 H 1.09000 * 109.47079 * 300.00020 * 9 7 2 25 25 H 1.09005 * 109.47314 * 59.99467 * 10 9 7 26 26 H 1.09000 * 109.47405 * 300.00162 * 10 9 7 27 27 H 1.08998 * 109.46777 * 60.00275 * 11 10 9 28 28 H 1.08991 * 109.47258 * 300.00463 * 11 10 9 29 29 H 1.09001 * 109.47375 * 300.00014 * 15 13 12 30 30 H 1.09000 * 109.47140 * 60.00032 * 15 13 12 31 31 H 1.08998 * 109.46505 * 299.99708 * 16 15 13 32 32 H 1.08996 * 109.46884 * 180.02562 * 16 15 13 33 33 H 1.09002 * 109.47153 * 180.02562 * 17 16 15 34 34 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 35 35 H 1.09004 * 109.46724 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4087 -6.0732 0.0006 13 6 1.7941 -7.3634 0.0005 14 1 0.8342 -7.3086 -0.5130 15 6 1.5753 -7.8241 1.4430 16 6 0.9168 -9.2051 1.4430 17 6 1.8244 -10.2030 0.7210 18 6 2.0432 -9.7422 -0.7215 19 6 2.7018 -8.3613 -0.7214 20 1 2.8581 -8.0332 -1.7491 21 9 3.9338 -8.4322 -0.0626 22 1 -0.4851 0.8401 0.0004 23 1 0.6245 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 2.8718 -3.6044 0.8905 26 1 2.8718 -3.6044 -0.8894 27 1 0.8532 -5.0451 -0.8886 28 1 0.8537 -5.0446 0.8913 29 1 2.5353 -7.8789 1.9565 30 1 0.9283 -7.1134 1.9572 31 1 -0.0432 -9.1498 0.9297 32 1 0.7605 -9.5331 2.4707 33 1 1.3550 -11.1868 0.7206 34 1 2.7844 -10.2583 1.2344 35 1 2.6895 -10.4534 -1.2359 36 1 1.0832 -9.6869 -1.2348 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205672857.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:00 Heat of formation + Delta-G solvation = -136.280636 kcal Electronic energy + Delta-G solvation = -16192.852805 eV Core-core repulsion = 13396.883581 eV Total energy + Delta-G solvation = -2795.969224 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.56693 -38.69177 -36.42989 -33.82091 -31.62015 -30.70091 -29.48544 -26.53280 -23.25810 -22.75363 -22.23254 -20.34862 -19.67995 -16.94731 -16.50354 -15.99229 -15.66522 -15.42795 -15.00261 -14.44430 -14.10001 -13.62070 -13.54249 -13.22292 -12.69658 -12.27929 -12.06441 -11.83666 -11.64628 -11.54356 -11.14739 -10.88921 -10.82230 -10.62407 -10.53610 -10.37194 -10.26603 -9.79055 -9.41795 -9.13665 -9.10522 -8.34471 -5.99975 -4.02152 3.35209 3.38830 3.42003 3.73130 4.37461 4.40838 4.47391 4.70661 4.71384 4.95131 5.04529 5.11355 5.16171 5.24549 5.36029 5.52218 5.57146 5.70983 5.76909 5.78190 5.82827 5.92480 6.01347 6.10905 6.20228 6.26754 6.69571 6.73622 7.10207 7.54252 7.66758 7.79054 7.99473 8.42661 9.04224 9.61858 11.11568 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.060394 B = 0.004245 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.508303 B = 6594.894266 C = 6815.000112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.061 3.939 12 O -0.378 6.378 13 C 0.064 3.936 14 H 0.072 0.928 15 C -0.144 4.144 16 C -0.118 4.118 17 C -0.123 4.123 18 C -0.144 4.144 19 C 0.098 3.902 20 H 0.086 0.914 21 F -0.205 7.205 22 H 0.261 0.739 23 H 0.016 0.984 24 H 0.017 0.983 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 -20.032 -0.148 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.014 4.014 12 O -0.298 6.298 13 C 0.005 3.995 14 H 0.090 0.910 15 C -0.181 4.181 16 C -0.156 4.156 17 C -0.160 4.160 18 C -0.182 4.182 19 C 0.062 3.938 20 H 0.104 0.896 21 F -0.186 7.186 22 H 0.071 0.929 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.117 -19.877 -0.132 19.909 hybrid contribution 0.134 0.959 0.024 0.969 sum 1.251 -18.918 -0.108 18.960 Atomic orbital electron populations 1.69954 1.06083 1.26751 1.50855 1.25020 0.94866 0.99296 0.95263 0.86621 0.79552 0.82935 0.78694 1.20194 1.21286 1.20183 1.21193 0.93127 0.90867 1.50657 0.92557 1.19044 0.93901 0.91077 0.97292 1.21655 0.99655 0.91654 1.01587 1.22868 0.92167 0.86991 0.99409 1.87995 1.34051 1.12752 1.94964 1.22579 0.95964 0.84825 0.96134 0.90964 1.22014 1.02266 0.96746 0.97122 1.21525 0.98606 0.94587 1.00853 1.21539 1.00732 0.98692 0.95044 1.22134 1.01859 0.95633 0.98563 1.21640 0.80440 0.95463 0.96270 0.89619 1.92795 1.45155 1.97350 1.83255 0.92934 0.96517 0.96490 0.92531 0.92572 0.93803 0.93750 0.90545 0.91113 0.91831 0.91429 0.91490 0.91175 0.90403 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.11 -2.37 5.52 -26.73 -0.15 -2.52 16 11 C 0.06 1.13 5.75 37.16 0.21 1.34 16 12 O -0.38 -6.64 9.93 -35.23 -0.35 -6.99 16 13 C 0.06 0.85 2.42 -26.73 -0.06 0.79 16 14 H 0.07 0.86 7.79 -51.93 -0.40 0.46 16 15 C -0.14 -1.75 5.42 -26.73 -0.14 -1.90 16 16 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 17 C -0.12 -1.05 5.80 -26.73 -0.16 -1.21 16 18 C -0.14 -1.25 5.72 -26.73 -0.15 -1.40 16 19 C 0.10 1.17 3.80 -26.73 -0.10 1.07 16 20 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 21 F -0.20 -3.01 15.99 2.25 0.04 -2.97 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 28 H 0.04 0.78 7.87 -51.93 -0.41 0.38 16 29 H 0.08 1.03 7.80 -51.93 -0.41 0.62 16 30 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.67 7.80 -51.93 -0.41 0.27 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 294.64 15.07 4.44 4.44 Total: -1.00 -31.12 294.64 -7.64 -38.76 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -6.22 Total: -5.32 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -1.26 Total: -18.40 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.35 Total: -6.99 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.12 -7.64 -38.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205672857.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.524 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds