Wall clock time and date at job start Sun Mar 29 2020 21:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46903 * 109.46966 * 2 1 4 4 C 1.46897 * 109.47165 * 239.99606 * 2 1 3 5 5 C 1.46902 * 109.46618 * 119.99718 * 2 1 3 6 6 C 1.53001 * 109.47155 * 54.16804 * 5 2 1 7 7 H 1.09000 * 109.46704 * 175.13716 * 6 5 2 8 8 C 1.50692 * 109.47089 * 295.14140 * 6 5 2 9 9 H 1.08002 * 120.00345 * 115.17741 * 8 6 5 10 10 C 1.37881 * 119.99967 * 294.89701 * 8 6 5 11 11 N 1.31510 * 120.00255 * 180.27790 * 10 8 6 12 12 Si 1.86807 * 119.99971 * 0.27562 * 10 8 6 13 13 H 1.48497 * 109.47082 * 89.99876 * 12 10 8 14 14 H 1.48496 * 109.47383 * 210.00398 * 12 10 8 15 15 H 1.48507 * 109.46827 * 330.00199 * 12 10 8 16 16 O 1.42905 * 109.46855 * 55.14204 * 6 5 2 17 17 C 1.42895 * 114.00157 * 98.12097 * 16 6 5 18 18 C 1.54039 * 113.81494 * 249.62190 * 17 16 6 19 19 O 1.44174 * 85.51553 * 223.19527 * 18 17 16 20 20 C 1.44171 * 93.34510 * 24.19060 * 19 18 17 21 21 H 1.09002 * 109.46955 * 290.36173 * 1 2 3 22 22 H 1.09004 * 109.47318 * 50.36216 * 1 2 3 23 23 H 1.08994 * 109.47234 * 170.36256 * 1 2 3 24 24 H 1.09002 * 109.46533 * 180.02562 * 3 2 1 25 25 H 1.08995 * 109.46991 * 299.99482 * 3 2 1 26 26 H 1.08997 * 109.47381 * 59.99813 * 3 2 1 27 27 H 1.08999 * 109.47180 * 314.97521 * 4 2 1 28 28 H 1.09004 * 109.47037 * 74.97188 * 4 2 1 29 29 H 1.08993 * 109.47034 * 194.96873 * 4 2 1 30 30 H 1.08996 * 109.47641 * 294.16253 * 5 2 1 31 31 H 1.09006 * 109.46780 * 174.16587 * 5 2 1 32 32 H 0.96998 * 120.00328 * 179.97438 * 11 10 8 33 33 H 1.08997 * 113.00048 * 21.59933 * 17 16 6 34 34 H 1.09005 * 113.86031 * 337.33679 * 18 17 16 35 35 H 1.08994 * 113.87096 * 109.04420 * 18 17 16 36 36 H 1.08995 * 113.86934 * 221.66135 * 20 19 18 37 37 H 1.09006 * 113.86689 * 89.95135 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6926 -1.1994 5 6 1.9586 -0.6925 1.1995 6 6 1.3324 -2.0864 1.2750 7 1 1.7604 -2.6319 2.1160 8 6 -0.1570 -1.9583 1.4649 9 1 -0.8314 -2.3064 0.6964 10 6 -0.6591 -1.4021 2.6223 11 7 -1.9591 -1.2953 2.7905 12 14 0.5071 -0.8003 3.9517 13 1 0.8430 0.6254 3.7071 14 1 -0.1441 -0.9347 5.2795 15 1 1.7497 -1.6132 3.9252 16 8 1.5989 -2.7946 0.0627 17 6 2.7080 -3.6918 0.1455 18 6 3.9331 -3.2436 -0.6736 19 8 4.0236 -4.6235 -1.0813 20 6 2.6253 -4.8754 -0.8368 21 1 -0.3633 0.3576 0.9635 22 1 -0.3634 0.6556 -0.7914 23 1 -0.3633 -1.0131 -0.1720 24 1 3.0487 1.3849 -0.0005 25 1 1.5954 1.8988 -0.8900 26 1 1.5953 1.8989 0.8899 27 1 1.3950 -1.6145 -1.3422 28 1 1.8286 -0.0487 -2.0693 29 1 3.0158 -0.9282 -1.0767 30 1 1.6831 -0.1219 2.0864 31 1 3.0436 -0.7838 1.1489 32 1 -2.3123 -0.9044 3.6049 33 1 2.9435 -3.9845 1.1687 34 1 3.6932 -2.5584 -1.4868 35 1 4.7721 -2.9077 -0.0644 36 1 2.4271 -5.8337 -0.3569 37 1 1.9860 -4.6884 -1.6997 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222681371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:06 Heat of formation + Delta-G solvation = 71.849834 kcal Electronic energy + Delta-G solvation = -18252.414015 eV Core-core repulsion = 15537.160139 eV Total energy + Delta-G solvation = -2715.253876 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.154 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.43940 -41.42235 -38.20813 -34.93568 -32.28008 -30.33865 -30.10888 -29.56703 -27.88769 -27.65942 -24.41114 -23.12765 -22.13455 -19.72935 -18.56594 -18.45968 -18.23849 -17.73317 -17.36277 -16.97389 -16.46402 -15.60822 -15.05289 -14.96991 -14.81495 -14.29654 -14.27292 -14.18162 -14.00061 -13.78211 -13.49309 -13.47152 -13.18124 -12.82706 -12.55892 -12.22961 -12.05298 -11.46535 -11.17590 -10.89154 -10.57119 -10.35633 -7.94331 -6.01792 0.42682 1.48344 1.66157 1.87789 2.27173 2.39866 2.43575 2.51019 2.56660 2.67184 3.08353 3.17834 3.22574 3.25839 3.56142 3.59085 3.67376 3.71316 3.74928 3.77869 3.92033 4.01417 4.12768 4.16864 4.33595 4.36003 4.43959 4.59054 4.74666 4.82693 4.94226 5.11417 5.51524 5.93734 6.61051 7.04737 7.52703 9.14046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.248 5.248 3 C -0.047 4.047 4 C -0.047 4.047 5 C -0.035 4.035 6 C 0.169 3.831 7 H 0.067 0.933 8 C -0.563 4.563 9 H 0.104 0.896 10 C 0.083 3.917 11 N -0.844 5.844 12 Si 0.851 3.149 13 H -0.271 1.271 14 H -0.267 1.267 15 H -0.260 1.260 16 O -0.362 6.362 17 C 0.017 3.983 18 C 0.007 3.993 19 O -0.372 6.372 20 C 0.039 3.961 21 H 0.116 0.884 22 H 0.079 0.921 23 H 0.168 0.832 24 H 0.108 0.892 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.150 0.850 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.285 0.715 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.543 7.132 -7.552 13.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 N 0.095 4.905 3 C -0.189 4.189 4 C -0.188 4.188 5 C -0.157 4.157 6 C 0.111 3.889 7 H 0.085 0.915 8 C -0.600 4.600 9 H 0.121 0.879 10 C -0.127 4.127 11 N -0.475 5.475 12 Si 0.677 3.323 13 H -0.197 1.197 14 H -0.192 1.192 15 H -0.184 1.184 16 O -0.281 6.281 17 C -0.042 4.042 18 C -0.071 4.071 19 O -0.291 6.291 20 C -0.037 4.037 21 H 0.134 0.866 22 H 0.098 0.902 23 H 0.186 0.814 24 H 0.127 0.873 25 H 0.133 0.867 26 H 0.130 0.870 27 H 0.167 0.833 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.430 7.054 -7.657 13.396 hybrid contribution 0.650 0.590 1.362 1.621 sum 9.080 7.644 -6.295 13.435 Atomic orbital electron populations 1.25117 0.73994 1.11908 1.06659 1.45693 1.17241 1.12909 1.14689 1.24092 1.04391 0.82055 1.08384 1.24586 1.04686 1.03164 0.86322 1.25051 1.01564 1.01725 0.87409 1.20726 0.98225 0.84687 0.85280 0.91529 1.20748 0.87607 1.45278 1.06330 0.87885 1.24874 0.95161 0.95594 0.97078 1.69748 1.11101 1.38964 1.27722 0.87368 0.81810 0.78799 0.84274 1.19722 1.19193 1.18445 1.87899 1.49336 1.55809 1.35085 1.25919 0.86464 0.90818 1.00956 1.24788 0.98427 0.86199 0.97652 1.89774 1.25692 1.24172 1.89491 1.24340 0.82712 0.99010 0.97683 0.86574 0.90198 0.81428 0.87334 0.86730 0.86977 0.83272 0.88051 0.88075 0.87001 0.88076 0.90385 0.87921 0.89755 0.89084 0.88194 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.20 6.59 60.07 0.40 0.59 16 2 N -0.25 2.05 0.05 -395.62 -0.02 2.03 16 3 C -0.05 0.52 7.94 60.07 0.48 1.00 16 4 C -0.05 0.45 6.67 60.06 0.40 0.85 16 5 C -0.04 0.18 3.89 -3.82 -0.01 0.17 16 6 C 0.17 -0.14 1.95 -27.89 -0.05 -0.19 16 7 H 0.07 0.05 6.00 -51.93 -0.31 -0.26 16 8 C -0.56 -2.20 5.73 -34.44 -0.20 -2.39 16 9 H 0.10 0.67 6.98 -52.49 -0.37 0.30 16 10 C 0.08 0.55 4.20 -17.82 -0.07 0.48 16 11 N -0.84 -8.71 13.96 55.43 0.77 -7.94 16 12 Si 0.85 3.98 24.65 -169.99 -4.19 -0.21 16 13 H -0.27 -0.74 6.86 56.52 0.39 -0.35 16 14 H -0.27 -2.08 7.11 56.52 0.40 -1.68 16 15 H -0.26 -0.89 6.40 56.52 0.36 -0.52 16 16 O -0.36 0.87 6.03 -35.23 -0.21 0.66 16 17 C 0.02 -0.04 4.53 -25.65 -0.12 -0.16 16 18 C 0.01 -0.02 8.34 37.61 0.31 0.29 16 19 O -0.37 -0.15 12.45 -35.23 -0.44 -0.59 16 20 C 0.04 -0.06 9.05 37.61 0.34 0.28 16 21 H 0.12 -0.27 6.43 -51.93 -0.33 -0.60 16 22 H 0.08 -0.62 8.00 -51.93 -0.42 -1.04 16 23 H 0.17 -0.39 4.24 -51.93 -0.22 -0.61 16 24 H 0.11 -1.37 8.14 -51.93 -0.42 -1.80 16 25 H 0.11 -1.45 7.96 -51.93 -0.41 -1.87 16 26 H 0.11 -1.16 8.11 -51.93 -0.42 -1.58 16 27 H 0.15 -1.10 5.16 -51.93 -0.27 -1.36 16 28 H 0.10 -1.19 7.89 -51.93 -0.41 -1.60 16 29 H 0.10 -1.06 5.46 -51.93 -0.28 -1.35 16 30 H 0.11 -0.40 3.86 -51.93 -0.20 -0.60 16 31 H 0.10 -0.81 7.89 -51.93 -0.41 -1.22 16 32 H 0.28 2.88 8.31 -40.82 -0.34 2.54 16 33 H 0.10 -0.23 7.40 -51.93 -0.38 -0.62 16 34 H 0.08 -0.51 6.02 -51.93 -0.31 -0.82 16 35 H 0.09 -0.45 8.14 -51.93 -0.42 -0.87 16 36 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 37 H 0.09 -0.21 8.14 -51.93 -0.42 -0.63 16 LS Contribution 268.68 15.07 4.05 4.05 Total: 0.00 -14.04 268.68 -4.20 -18.24 By element: Atomic # 1 Polarization: -11.51 SS G_CDS: -5.63 Total: -17.14 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 1.47 Total: 0.91 kcal Atomic # 7 Polarization: -6.67 SS G_CDS: 0.75 Total: -5.91 kcal Atomic # 8 Polarization: 0.72 SS G_CDS: -0.65 Total: 0.07 kcal Atomic # 14 Polarization: 3.98 SS G_CDS: -4.19 Total: -0.21 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -14.04 -4.20 -18.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222681371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.087 kcal (2) G-P(sol) polarization free energy of solvation -14.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds