Wall clock time and date at job start Sun Mar 29 2020 21:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46903 * 109.46966 * 2 1 4 4 C 1.46897 * 109.47165 * 239.99606 * 2 1 3 5 5 C 1.46902 * 109.46618 * 119.99718 * 2 1 3 6 6 C 1.53001 * 109.47155 * 54.16804 * 5 2 1 7 7 H 1.09000 * 109.46704 * 175.13716 * 6 5 2 8 8 C 1.50692 * 109.47089 * 295.14140 * 6 5 2 9 9 H 1.08002 * 120.00345 * 115.17741 * 8 6 5 10 10 C 1.37881 * 119.99967 * 294.89701 * 8 6 5 11 11 N 1.31510 * 120.00255 * 180.27790 * 10 8 6 12 12 Si 1.86807 * 119.99971 * 0.27562 * 10 8 6 13 13 H 1.48497 * 109.47082 * 89.99876 * 12 10 8 14 14 H 1.48496 * 109.47383 * 210.00398 * 12 10 8 15 15 H 1.48507 * 109.46827 * 330.00199 * 12 10 8 16 16 O 1.42905 * 109.46855 * 55.14204 * 6 5 2 17 17 C 1.42895 * 114.00157 * 98.12097 * 16 6 5 18 18 C 1.54039 * 113.81494 * 249.62190 * 17 16 6 19 19 O 1.44174 * 85.51553 * 223.19527 * 18 17 16 20 20 C 1.44171 * 93.34510 * 24.19060 * 19 18 17 21 21 H 1.09002 * 109.46955 * 290.36173 * 1 2 3 22 22 H 1.09004 * 109.47318 * 50.36216 * 1 2 3 23 23 H 1.08994 * 109.47234 * 170.36256 * 1 2 3 24 24 H 1.09002 * 109.46533 * 180.02562 * 3 2 1 25 25 H 1.08995 * 109.46991 * 299.99482 * 3 2 1 26 26 H 1.08997 * 109.47381 * 59.99813 * 3 2 1 27 27 H 1.08999 * 109.47180 * 314.97521 * 4 2 1 28 28 H 1.09004 * 109.47037 * 74.97188 * 4 2 1 29 29 H 1.08993 * 109.47034 * 194.96873 * 4 2 1 30 30 H 1.08996 * 109.47641 * 294.16253 * 5 2 1 31 31 H 1.09006 * 109.46780 * 174.16587 * 5 2 1 32 32 H 0.96998 * 120.00328 * 179.97438 * 11 10 8 33 33 H 1.08997 * 113.00048 * 21.59933 * 17 16 6 34 34 H 1.09005 * 113.86031 * 337.33679 * 18 17 16 35 35 H 1.08994 * 113.87096 * 109.04420 * 18 17 16 36 36 H 1.08995 * 113.86934 * 221.66135 * 20 19 18 37 37 H 1.09006 * 113.86689 * 89.95135 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6926 -1.1994 5 6 1.9586 -0.6925 1.1995 6 6 1.3324 -2.0864 1.2750 7 1 1.7604 -2.6319 2.1160 8 6 -0.1570 -1.9583 1.4649 9 1 -0.8314 -2.3064 0.6964 10 6 -0.6591 -1.4021 2.6223 11 7 -1.9591 -1.2953 2.7905 12 14 0.5071 -0.8003 3.9517 13 1 0.8430 0.6254 3.7071 14 1 -0.1441 -0.9347 5.2795 15 1 1.7497 -1.6132 3.9252 16 8 1.5989 -2.7946 0.0627 17 6 2.7080 -3.6918 0.1455 18 6 3.9331 -3.2436 -0.6736 19 8 4.0236 -4.6235 -1.0813 20 6 2.6253 -4.8754 -0.8368 21 1 -0.3633 0.3576 0.9635 22 1 -0.3634 0.6556 -0.7914 23 1 -0.3633 -1.0131 -0.1720 24 1 3.0487 1.3849 -0.0005 25 1 1.5954 1.8988 -0.8900 26 1 1.5953 1.8989 0.8899 27 1 1.3950 -1.6145 -1.3422 28 1 1.8286 -0.0487 -2.0693 29 1 3.0158 -0.9282 -1.0767 30 1 1.6831 -0.1219 2.0864 31 1 3.0436 -0.7838 1.1489 32 1 -2.3123 -0.9044 3.6049 33 1 2.9435 -3.9845 1.1687 34 1 3.6932 -2.5584 -1.4868 35 1 4.7721 -2.9077 -0.0644 36 1 2.4271 -5.8337 -0.3569 37 1 1.9860 -4.6884 -1.6997 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222681371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:05 Heat of formation + Delta-G solvation = 65.430036 kcal Electronic energy + Delta-G solvation = -18252.692398 eV Core-core repulsion = 15537.160139 eV Total energy + Delta-G solvation = -2715.532260 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.92623 -41.21860 -38.04738 -35.22826 -32.25259 -29.76246 -29.51424 -29.34565 -27.65979 -27.43980 -24.17133 -22.92139 -21.93798 -19.68289 -18.46107 -18.03956 -17.75394 -17.39279 -17.10139 -16.80205 -16.55975 -15.50203 -14.89743 -14.56775 -14.53798 -14.08244 -13.97896 -13.76871 -13.52563 -13.34790 -13.16643 -12.99151 -12.94036 -12.63853 -12.45845 -12.29919 -11.95758 -11.71910 -11.38194 -10.84619 -10.68086 -10.40002 -8.45233 -6.47926 1.03760 1.11209 1.28330 1.43210 2.15621 2.55701 2.71112 2.79291 3.01228 3.14790 3.19788 3.31288 3.86458 3.91470 3.98041 4.19503 4.22115 4.26239 4.29893 4.38863 4.48799 4.59525 4.60972 4.62537 4.67712 4.74503 4.80523 4.83105 4.98149 5.14003 5.16514 5.26268 5.41468 5.80094 6.32452 6.59227 7.08148 8.66523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.240 5.240 3 C -0.051 4.051 4 C -0.051 4.051 5 C -0.028 4.028 6 C 0.167 3.833 7 H 0.056 0.944 8 C -0.526 4.526 9 H 0.066 0.934 10 C 0.040 3.960 11 N -0.917 5.917 12 Si 0.889 3.111 13 H -0.235 1.235 14 H -0.319 1.319 15 H -0.232 1.232 16 O -0.356 6.356 17 C 0.016 3.984 18 C 0.015 3.985 19 O -0.405 6.405 20 C 0.031 3.969 21 H 0.085 0.915 22 H 0.112 0.888 23 H 0.131 0.869 24 H 0.137 0.863 25 H 0.136 0.864 26 H 0.104 0.896 27 H 0.123 0.877 28 H 0.132 0.868 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.149 0.851 32 H 0.270 0.730 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.979 8.898 -9.246 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 N 0.103 4.897 3 C -0.192 4.192 4 C -0.191 4.191 5 C -0.150 4.150 6 C 0.109 3.891 7 H 0.074 0.926 8 C -0.563 4.563 9 H 0.084 0.916 10 C -0.163 4.163 11 N -0.553 5.553 12 Si 0.715 3.285 13 H -0.159 1.159 14 H -0.248 1.248 15 H -0.156 1.156 16 O -0.275 6.275 17 C -0.042 4.042 18 C -0.061 4.061 19 O -0.325 6.325 20 C -0.046 4.046 21 H 0.103 0.897 22 H 0.131 0.869 23 H 0.149 0.851 24 H 0.155 0.845 25 H 0.155 0.845 26 H 0.123 0.877 27 H 0.141 0.859 28 H 0.151 0.849 29 H 0.139 0.861 30 H 0.118 0.882 31 H 0.166 0.834 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.111 0.889 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.935 8.832 -9.394 17.570 hybrid contribution -0.399 -0.055 1.732 1.778 sum 11.536 8.777 -7.662 16.396 Atomic orbital electron populations 1.24618 0.76372 1.10058 1.06082 1.45534 1.15309 1.14755 1.14113 1.24330 1.06133 0.79491 1.09211 1.24673 1.05104 1.02774 0.86562 1.24653 1.03798 0.97952 0.88612 1.20462 0.95032 0.87807 0.85842 0.92631 1.20945 0.90293 1.41141 1.03966 0.91579 1.25390 0.95411 0.96474 0.98987 1.69930 1.13634 1.43814 1.27968 0.86790 0.80956 0.81208 0.79551 1.15914 1.24796 1.15551 1.87971 1.50020 1.55911 1.33625 1.25903 0.87027 0.90533 1.00757 1.25026 0.97923 0.84951 0.98187 1.89741 1.26255 1.26702 1.89837 1.24425 0.82430 0.99402 0.98338 0.89653 0.86946 0.85118 0.84467 0.84536 0.87745 0.85888 0.84932 0.86084 0.88189 0.83362 0.92055 0.88334 0.87048 0.87139 0.88895 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.31 6.59 127.69 0.84 1.15 16 2 N -0.24 4.55 0.05 ******* -0.07 4.48 16 3 C -0.05 1.34 7.94 127.69 1.01 2.35 16 4 C -0.05 1.14 6.67 127.69 0.85 1.99 16 5 C -0.03 0.35 3.89 86.30 0.34 0.69 16 6 C 0.17 -0.31 1.95 29.85 0.06 -0.25 16 7 H 0.06 0.05 6.00 -2.39 -0.01 0.03 16 8 C -0.53 -5.43 5.73 25.60 0.15 -5.28 16 9 H 0.07 1.15 6.98 -2.91 -0.02 1.13 16 10 C 0.04 0.65 4.20 84.66 0.36 1.01 16 11 N -0.92 -23.60 13.96 21.45 0.30 -23.30 16 12 Si 0.89 9.10 24.65 68.60 1.69 10.80 16 13 H -0.23 -0.93 6.86 99.48 0.68 -0.25 16 14 H -0.32 -6.10 7.11 99.48 0.71 -5.39 16 15 H -0.23 -1.22 6.40 99.48 0.64 -0.58 16 16 O -0.36 1.86 6.03 -148.98 -0.90 0.96 16 17 C 0.02 -0.10 4.53 31.30 0.14 0.04 16 18 C 0.02 -0.15 8.34 72.28 0.60 0.45 16 19 O -0.41 0.00 12.45 -148.98 -1.85 -1.85 16 20 C 0.03 -0.08 9.05 72.27 0.65 0.57 16 21 H 0.08 -0.25 6.43 -2.39 -0.02 -0.27 16 22 H 0.11 -1.87 8.00 -2.39 -0.02 -1.89 16 23 H 0.13 -0.33 4.24 -2.39 -0.01 -0.34 16 24 H 0.14 -4.25 8.14 -2.39 -0.02 -4.27 16 25 H 0.14 -4.07 7.96 -2.39 -0.02 -4.09 16 26 H 0.10 -2.46 8.11 -2.39 -0.02 -2.48 16 27 H 0.12 -1.98 5.16 -2.39 -0.01 -1.99 16 28 H 0.13 -3.70 7.89 -2.38 -0.02 -3.72 16 29 H 0.12 -3.15 5.46 -2.39 -0.01 -3.16 16 30 H 0.10 -0.94 3.86 -2.39 -0.01 -0.95 16 31 H 0.15 -3.15 7.89 -2.38 -0.02 -3.17 16 32 H 0.27 7.02 8.31 -92.71 -0.77 6.25 16 33 H 0.10 -0.50 7.40 -2.39 -0.02 -0.52 16 34 H 0.11 -1.77 6.02 -2.38 -0.01 -1.79 16 35 H 0.11 -1.52 8.14 -2.39 -0.02 -1.54 16 36 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.10 -0.41 8.14 -2.38 -0.02 -0.43 16 Total: 0.00 -40.94 268.68 5.13 -35.81 By element: Atomic # 1 Polarization: -30.58 SS G_CDS: 0.96 Total: -29.62 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 5.00 Total: 2.73 kcal Atomic # 7 Polarization: -19.05 SS G_CDS: 0.23 Total: -18.82 kcal Atomic # 8 Polarization: 1.86 SS G_CDS: -2.75 Total: -0.89 kcal Atomic # 14 Polarization: 9.10 SS G_CDS: 1.69 Total: 10.80 kcal Total: -40.94 5.13 -35.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222681371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.239 kcal (2) G-P(sol) polarization free energy of solvation -40.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds