Wall clock time and date at job start Sun Mar 29 2020 21:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47503 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00370 * 179.97438 * 13 12 11 15 15 C 1.53259 * 109.57535 * 269.74353 * 14 13 12 16 16 O 1.43120 * 108.92489 * 185.80263 * 15 14 13 17 17 C 1.42963 * 113.88516 * 57.76792 * 16 15 14 18 18 O 1.42972 * 109.47028 * 301.27946 * 17 16 15 19 19 C 1.43082 * 113.76967 * 58.79244 * 18 17 16 20 20 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 22 22 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 23 23 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 24 24 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 25 25 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 26 26 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 27 27 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 28 28 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 29 29 H 1.08998 * 109.57096 * 30.00292 * 14 13 12 30 30 H 1.09000 * 109.55614 * 305.50313 * 15 14 13 31 31 H 1.08994 * 109.55598 * 65.82727 * 15 14 13 32 32 H 1.09000 * 109.47431 * 181.27328 * 17 16 15 33 33 H 1.09006 * 109.46961 * 61.27774 * 17 16 15 34 34 H 1.09010 * 109.55713 * 182.19049 * 19 18 17 35 35 H 1.08999 * 109.65540 * 61.92581 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 8 1.7598 -7.3876 -0.0018 14 6 2.5997 -8.5437 -0.0030 15 6 2.8951 -8.9623 -1.4474 16 8 3.6217 -10.1953 -1.4340 17 6 2.9428 -11.2600 -0.7637 18 8 2.6808 -10.8808 0.5897 19 6 1.8877 -9.6964 0.7135 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5566 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.8725 -3.6048 0.8878 24 1 2.8712 -3.6040 -0.8921 25 1 0.8543 -5.0449 0.8894 26 1 0.8525 -5.0447 -0.8905 27 1 3.1003 -6.0924 -0.8922 28 1 3.1016 -6.0924 0.8877 29 1 3.5342 -8.3166 0.5099 30 1 1.9578 -9.0991 -1.9866 31 1 3.4900 -8.1910 -1.9364 32 1 3.5666 -12.1537 -0.7765 33 1 2.0009 -11.4672 -1.2719 34 1 1.7631 -9.4493 1.7679 35 1 0.9105 -9.8603 0.2593 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224691384.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:43 Heat of formation + Delta-G solvation = -161.864480 kcal Electronic energy + Delta-G solvation = -15827.179935 eV Core-core repulsion = 13017.728522 eV Total energy + Delta-G solvation = -2809.451412 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.31113 -37.90296 -36.05113 -34.72716 -32.53241 -31.13136 -28.56149 -26.39984 -25.87118 -24.64431 -21.81824 -21.48880 -20.05815 -17.59580 -17.43358 -16.76948 -16.30749 -16.16216 -15.77474 -14.95417 -14.53275 -14.23218 -13.89824 -13.68094 -13.24285 -12.82491 -12.33253 -11.83404 -11.65671 -11.46952 -11.30397 -11.17898 -10.88881 -10.57347 -10.50752 -10.43882 -10.03262 -9.70148 -9.44423 -9.33770 -9.06260 -8.34709 -5.99751 -4.02307 3.20018 3.30210 3.31888 3.38068 3.41474 3.70821 4.38892 4.43978 4.46726 4.64615 4.73304 5.05632 5.09671 5.26880 5.29294 5.36036 5.44837 5.54574 5.56266 5.67855 6.01525 6.04943 6.35972 6.42246 6.73059 6.73479 6.87311 7.04099 7.21466 7.67943 7.82333 8.00541 8.42679 9.04960 9.61741 11.11621 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.079697 B = 0.003495 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.246009 B = 8008.872884 C = 8147.562940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.116 4.116 12 C 0.061 3.939 13 O -0.374 6.374 14 C 0.024 3.976 15 C 0.035 3.965 16 O -0.393 6.393 17 C 0.217 3.783 18 O -0.391 6.391 19 C 0.060 3.940 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.017 0.983 23 H 0.049 0.951 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.049 0.951 34 H 0.108 0.892 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.580 -20.481 -1.118 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.154 4.154 12 C -0.015 4.015 13 O -0.294 6.294 14 C -0.036 4.036 15 C -0.042 4.042 16 O -0.313 6.313 17 C 0.103 3.897 18 O -0.311 6.311 19 C -0.016 4.016 20 H 0.070 0.930 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.149 0.851 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.473 -20.494 -1.043 21.002 hybrid contribution 0.356 1.186 -0.171 1.250 sum 4.829 -19.308 -1.214 19.940 Atomic orbital electron populations 1.69971 1.06062 1.26589 1.50875 1.25037 0.94861 0.99282 0.95354 0.86592 0.79839 0.83462 0.78093 1.20667 1.21214 1.19881 1.21269 0.93034 0.91136 1.50555 0.92708 1.19090 0.93978 0.91171 0.97349 1.21585 0.99220 0.93370 1.00392 1.21657 0.98050 0.92809 1.02883 1.22850 0.95543 0.83052 1.00046 1.87909 1.33240 1.13285 1.94919 1.23209 0.95651 0.88093 0.96599 1.23238 0.97690 0.86465 0.96765 1.88115 1.46917 1.20217 1.76074 1.24079 0.96589 0.90038 0.79014 1.88144 1.72333 1.42936 1.27672 1.22657 0.93370 0.83001 1.02577 0.93000 0.96531 0.96502 0.93262 0.93273 0.91556 0.91602 0.93371 0.93165 0.90336 0.91701 0.87920 0.85123 0.93315 0.87404 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.33 16 11 C -0.12 -1.99 5.58 -26.73 -0.15 -2.14 16 12 C 0.06 0.86 5.75 37.16 0.21 1.08 16 13 O -0.37 -5.14 10.00 -35.23 -0.35 -5.49 16 14 C 0.02 0.27 3.01 -26.46 -0.08 0.19 16 15 C 0.04 0.38 6.60 37.29 0.25 0.62 16 16 O -0.39 -4.37 10.89 -59.03 -0.64 -5.01 16 17 C 0.22 1.91 7.82 101.05 0.79 2.70 16 18 O -0.39 -4.20 10.90 -59.03 -0.64 -4.84 16 19 C 0.06 0.62 6.62 37.29 0.25 0.87 16 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.05 0.63 8.05 -51.93 -0.42 0.22 16 28 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.08 0.91 7.79 -51.93 -0.40 0.50 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.10 1.06 8.05 -51.93 -0.42 0.64 16 32 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.11 1.03 8.14 -51.92 -0.42 0.60 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 293.63 15.07 4.42 4.42 Total: -1.00 -31.28 293.63 -6.77 -38.05 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -5.85 Total: -5.14 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 0.58 Total: -12.30 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.74 Total: -26.41 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -1.64 Total: -15.35 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.28 -6.77 -38.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224691384.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.815 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds