Wall clock time and date at job start Sun Mar 29 2020 21:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47503 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00370 * 179.97438 * 13 12 11 15 15 C 1.53259 * 109.57535 * 269.74353 * 14 13 12 16 16 O 1.43120 * 108.92489 * 185.80263 * 15 14 13 17 17 C 1.42963 * 113.88516 * 57.76792 * 16 15 14 18 18 O 1.42972 * 109.47028 * 301.27946 * 17 16 15 19 19 C 1.43082 * 113.76967 * 58.79244 * 18 17 16 20 20 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 22 22 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 23 23 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 24 24 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 25 25 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 26 26 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 27 27 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 28 28 H 1.08998 * 109.47533 * 59.99948 * 12 11 10 29 29 H 1.08998 * 109.57096 * 30.00292 * 14 13 12 30 30 H 1.09000 * 109.55614 * 305.50313 * 15 14 13 31 31 H 1.08994 * 109.55598 * 65.82727 * 15 14 13 32 32 H 1.09000 * 109.47431 * 181.27328 * 17 16 15 33 33 H 1.09006 * 109.46961 * 61.27774 * 17 16 15 34 34 H 1.09010 * 109.55713 * 182.19049 * 19 18 17 35 35 H 1.08999 * 109.65540 * 61.92581 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 8 1.7598 -7.3876 -0.0018 14 6 2.5997 -8.5437 -0.0030 15 6 2.8951 -8.9623 -1.4474 16 8 3.6217 -10.1953 -1.4340 17 6 2.9428 -11.2600 -0.7637 18 8 2.6808 -10.8808 0.5897 19 6 1.8877 -9.6964 0.7135 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5566 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.8725 -3.6048 0.8878 24 1 2.8712 -3.6040 -0.8921 25 1 0.8543 -5.0449 0.8894 26 1 0.8525 -5.0447 -0.8905 27 1 3.1003 -6.0924 -0.8922 28 1 3.1016 -6.0924 0.8877 29 1 3.5342 -8.3166 0.5099 30 1 1.9578 -9.0991 -1.9866 31 1 3.4900 -8.1910 -1.9364 32 1 3.5666 -12.1537 -0.7765 33 1 2.0009 -11.4672 -1.2719 34 1 1.7631 -9.4493 1.7679 35 1 0.9105 -9.8603 0.2593 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224691384.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:43 Heat of formation + Delta-G solvation = -182.572732 kcal Electronic energy + Delta-G solvation = -15828.077912 eV Core-core repulsion = 13017.728522 eV Total energy + Delta-G solvation = -2810.349390 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 230.135 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.12257 -38.93338 -36.84035 -36.45099 -34.42787 -32.23405 -30.21788 -27.25236 -26.84101 -26.20330 -23.42450 -22.42964 -21.66968 -18.47703 -18.39110 -18.27956 -17.65867 -17.09690 -16.75831 -16.50921 -16.06144 -15.31656 -14.90647 -14.67662 -14.44245 -14.37555 -13.74215 -13.56929 -13.12765 -12.76913 -12.67197 -12.38549 -12.26434 -12.19335 -12.03139 -11.66496 -11.38130 -11.33332 -11.10117 -10.78896 -10.55611 -10.40240 -8.20212 -6.31688 1.40390 1.41895 1.53070 2.28102 2.42025 2.54882 2.91445 3.12918 3.55840 3.62266 3.87654 3.99773 4.05023 4.16755 4.31625 4.39555 4.44803 4.54362 4.57998 4.64785 4.75424 4.77187 4.86569 5.15356 5.23550 5.27992 5.52482 5.56363 5.75415 5.85944 5.99128 6.14961 6.24613 6.86000 7.37828 8.91803 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.079697 B = 0.003495 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.246009 B = 8008.872884 C = 8147.562940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.021 3.979 10 C -0.096 4.096 11 C -0.109 4.109 12 C 0.069 3.931 13 O -0.386 6.386 14 C 0.022 3.978 15 C 0.035 3.965 16 O -0.407 6.407 17 C 0.207 3.793 18 O -0.402 6.402 19 C 0.060 3.940 20 H 0.264 0.736 21 H -0.009 1.009 22 H -0.009 1.009 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.155 0.845 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.920 -21.004 -1.263 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.147 4.147 12 C -0.007 4.007 13 O -0.305 6.305 14 C -0.036 4.036 15 C -0.042 4.042 16 O -0.327 6.327 17 C 0.094 3.906 18 O -0.323 6.323 19 C -0.016 4.016 20 H 0.072 0.928 21 H 0.009 0.991 22 H 0.009 0.991 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.172 0.828 33 H 0.083 0.917 34 H 0.131 0.869 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.823 -21.040 -1.189 21.863 hybrid contribution -0.098 1.279 -0.132 1.290 sum 5.725 -19.761 -1.321 20.616 Atomic orbital electron populations 1.70108 1.07879 1.27789 1.51740 1.26028 0.95796 1.03520 0.94742 0.85422 0.78666 0.78284 0.78523 1.19724 1.20794 1.18610 1.21744 0.93660 0.92415 1.50467 0.91977 1.19026 0.94531 0.93180 0.94829 1.21363 0.98062 0.92809 1.01087 1.21460 0.98255 0.92695 1.02271 1.22642 0.94469 0.82331 1.01247 1.87866 1.33940 1.13624 1.95104 1.23315 0.95433 0.87522 0.97359 1.23229 0.98005 0.86692 0.96249 1.88100 1.47623 1.20630 1.76376 1.24486 0.97915 0.89989 0.78217 1.88133 1.72431 1.42842 1.28879 1.22680 0.93490 0.82609 1.02864 0.92771 0.99068 0.99089 0.92544 0.92437 0.92291 0.92220 0.92034 0.92123 0.90437 0.91200 0.87689 0.82820 0.91658 0.86934 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.54 -31.26 9.11 25.60 0.23 -31.02 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.85 5.15 30.59 0.16 -3.69 16 11 C -0.11 -3.68 5.58 30.59 0.17 -3.51 16 12 C 0.07 1.84 5.75 71.98 0.41 2.26 16 13 O -0.39 -10.03 10.00 -148.98 -1.49 -11.52 16 14 C 0.02 0.48 3.01 30.77 0.09 0.57 16 15 C 0.03 0.69 6.60 72.07 0.48 1.17 16 16 O -0.41 -8.31 10.89 -126.22 -1.37 -9.69 16 17 C 0.21 3.22 7.82 113.37 0.89 4.11 16 18 O -0.40 -7.94 10.90 -126.22 -1.38 -9.32 16 19 C 0.06 1.15 6.62 72.07 0.48 1.62 16 20 H 0.26 15.20 8.31 -92.71 -0.77 14.42 16 21 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 22 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 23 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.06 1.49 8.05 -2.39 -0.02 1.47 16 28 H 0.06 1.50 8.09 -2.39 -0.02 1.48 16 29 H 0.08 1.67 7.79 -2.39 -0.02 1.65 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.10 1.99 8.05 -2.39 -0.02 1.97 16 32 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -66.46 293.63 2.63 -63.83 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: 1.04 Total: 4.51 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 3.52 Total: -26.94 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.28 Total: -57.28 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -4.24 Total: -30.52 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -66.46 2.63 -63.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224691384.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.745 kcal (2) G-P(sol) polarization free energy of solvation -66.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds