Wall clock time and date at job start Sun Mar 29 2020 21:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86807 * 119.99567 * 2 1 4 4 H 1.48499 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46863 * 299.99859 * 3 2 1 6 6 H 1.48494 * 109.47492 * 59.99339 * 3 2 1 7 7 C 1.40011 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99832 * 179.97438 * 7 2 1 9 9 C 1.41374 * 119.99914 * 0.02562 * 7 2 1 10 10 C 1.40733 * 119.75545 * 180.24536 * 9 7 2 11 11 C 1.38280 * 119.22138 * 180.27006 * 10 9 7 12 12 C 1.38677 * 118.70637 * 359.48281 * 11 10 9 13 13 C 1.40069 * 119.44726 * 0.25571 * 12 11 10 14 14 C 1.47714 * 119.62091 * 179.97438 * 13 12 11 15 15 C 1.31578 * 118.66280 * 185.49729 * 14 13 12 16 16 C 1.50169 * 123.04732 * 180.33955 * 15 14 13 17 17 N 1.46840 * 110.24768 * 342.92425 * 16 15 14 18 18 C 1.47209 * 110.26878 * 51.18917 * 17 16 15 19 19 C 1.50323 * 118.67122 * 5.23499 * 14 13 12 20 20 N 1.32390 * 120.74906 * 0.02562 * 13 12 11 21 21 H 0.96997 * 120.00312 * 0.02562 * 1 2 3 22 22 H 1.08007 * 120.39212 * 0.02562 * 10 9 7 23 23 H 1.08002 * 120.64487 * 179.76510 * 11 10 9 24 24 H 1.07995 * 120.27739 * 180.22685 * 12 11 10 25 25 H 1.08002 * 118.48026 * 0.31366 * 15 14 13 26 26 H 1.09001 * 109.34328 * 103.15419 * 16 15 14 27 27 H 1.08996 * 109.34482 * 222.84003 * 16 15 14 28 28 H 1.00898 * 110.99393 * 287.75724 * 17 16 15 29 29 H 1.09002 * 109.62770 * 50.39847 * 18 17 16 30 30 H 1.08994 * 109.62581 * 170.97156 * 18 17 16 31 31 H 1.09008 * 109.43132 * 283.53844 * 19 14 13 32 32 H 1.09002 * 109.43631 * 43.39064 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 3.7014 1.3467 -0.0006 5 1 1.8826 2.3965 -1.2126 6 1 1.8826 2.3967 1.2123 7 6 2.0077 -1.2125 0.0005 8 1 3.0877 -1.2124 0.0001 9 6 1.3009 -2.4369 0.0005 10 6 2.0098 -3.6526 0.0063 11 6 1.3073 -4.8437 0.0006 12 6 -0.0787 -4.7996 0.0002 13 6 -0.7282 -3.5585 0.0002 14 6 -2.2044 -3.5071 -0.0007 15 6 -2.7951 -2.3365 -0.1113 16 6 -4.2874 -2.1694 -0.1158 17 7 -4.9419 -3.4549 -0.3904 18 6 -4.4216 -4.4951 0.5120 19 6 -2.9710 -4.7946 0.1187 20 7 -0.0340 -2.4313 0.0001 21 1 -0.4850 0.8400 -0.0004 22 1 3.0898 -3.6553 0.0112 23 1 1.8281 -5.7899 0.0010 24 1 -0.6526 -5.7144 -0.0005 25 1 -2.1780 -1.4549 -0.2027 26 1 -4.6122 -1.7996 0.8568 27 1 -4.5681 -1.4520 -0.8869 28 1 -4.8235 -3.7218 -1.3562 29 1 -4.4597 -4.1392 1.5416 30 1 -5.0211 -5.3998 0.4120 31 1 -2.9515 -5.3183 -0.8372 32 1 -2.5117 -5.4206 0.8837 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240465127.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:54 Heat of formation + Delta-G solvation = 42.384954 kcal Electronic energy + Delta-G solvation = -15543.643411 eV Core-core repulsion = 13082.650590 eV Total energy + Delta-G solvation = -2460.992821 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.84134 -37.52509 -33.76104 -32.29251 -30.79708 -30.04179 -28.93368 -25.70189 -23.87050 -22.85643 -21.16698 -20.80510 -17.79204 -17.45756 -15.92747 -14.89124 -14.78009 -14.49703 -14.05916 -13.94341 -13.36879 -13.19707 -12.53675 -12.27791 -12.03549 -11.99066 -11.42779 -11.26329 -11.06702 -11.01682 -10.73735 -10.57405 -10.27019 -9.86885 -9.48207 -8.82370 -8.17850 -8.04005 -7.60851 -7.16879 -6.44071 -4.54494 2.17922 2.86528 3.07255 3.11361 3.16358 3.54086 3.92302 4.56183 4.77294 5.20264 5.42868 5.48796 5.58063 5.78929 5.90877 6.00461 6.04921 6.15658 6.17952 6.29187 6.31741 6.53258 6.73696 6.85990 7.06227 7.09683 7.32766 7.37936 7.54768 7.65162 7.68311 7.80677 8.06200 8.21801 8.65012 8.90510 10.05539 10.28319 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026810 B = 0.008732 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.133231 B = 3205.734704 C = 4197.095525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.719 5.719 2 C 0.071 3.929 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.433 4.433 8 H 0.083 0.917 9 C 0.257 3.743 10 C -0.277 4.277 11 C -0.061 4.061 12 C -0.306 4.306 13 C 0.175 3.825 14 C -0.081 4.081 15 C -0.172 4.172 16 C 0.085 3.915 17 N -0.686 5.686 18 C 0.057 3.943 19 C -0.113 4.113 20 N -0.471 5.471 21 H 0.271 0.729 22 H 0.098 0.902 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.150 0.850 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.339 0.661 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.661 -3.125 -0.235 6.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.341 5.341 2 C -0.154 4.154 3 Si 0.731 3.269 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.101 0.899 9 C 0.131 3.869 10 C -0.300 4.300 11 C -0.085 4.085 12 C -0.329 4.329 13 C 0.031 3.969 14 C -0.082 4.082 15 C -0.193 4.193 16 C -0.044 4.044 17 N -0.314 5.314 18 C -0.073 4.073 19 C -0.152 4.152 20 N -0.184 5.184 21 H 0.082 0.918 22 H 0.116 0.884 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.168 0.832 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.155 0.845 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.801 -2.013 0.162 7.095 hybrid contribution 2.006 -0.369 -0.356 2.070 sum -4.795 -2.382 -0.194 5.358 Atomic orbital electron populations 1.70082 1.07187 1.27517 1.29290 1.26037 0.94904 1.01009 0.93455 0.86279 0.80838 0.81195 0.78542 1.18468 1.19845 1.19837 1.19621 0.94238 0.89330 1.43244 0.89852 1.18548 0.88026 0.91996 0.88355 1.21775 0.98686 0.93616 1.15936 1.20789 0.94004 0.96571 0.97112 1.21264 0.94438 0.96956 1.20213 1.19979 0.92485 0.89782 0.94621 1.19570 0.91737 0.93976 1.02959 1.23778 0.96634 1.00249 0.98672 1.20963 0.89992 0.91516 1.01961 1.61118 1.58229 1.03461 1.08606 1.22123 0.92752 0.94957 0.97471 1.21059 0.95963 0.96258 1.01897 1.68773 1.07235 1.25257 1.17167 0.91770 0.88416 0.88697 0.88698 0.83244 0.90251 0.90313 0.84494 0.90927 0.90840 0.91377 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.68 10.94 55.55 0.61 -18.07 16 2 C 0.07 1.79 5.50 -17.35 -0.10 1.69 16 3 Si 0.91 18.55 29.56 -169.99 -5.02 13.52 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.43 -11.64 9.14 -37.73 -0.34 -11.98 16 8 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.26 7.12 6.55 -85.01 -0.56 6.56 16 10 C -0.28 -6.98 9.83 -38.62 -0.38 -7.36 16 11 C -0.06 -1.40 10.14 -39.40 -0.40 -1.80 16 12 C -0.31 -7.06 9.36 -38.73 -0.36 -7.43 16 13 C 0.18 4.34 6.69 -83.07 -0.56 3.78 16 14 C -0.08 -1.69 5.85 -102.79 -0.60 -2.29 16 15 C -0.17 -3.45 9.51 -36.42 -0.35 -3.80 16 16 C 0.08 1.33 6.74 -5.27 -0.04 1.30 16 17 N -0.69 -9.82 6.97 -115.02 -0.80 -10.62 16 18 C 0.06 0.79 6.65 -3.53 -0.02 0.77 16 19 C -0.11 -1.84 4.90 -27.94 -0.14 -1.98 16 20 N -0.47 -12.97 6.61 -7.78 -0.05 -13.02 16 21 H 0.27 6.36 8.29 -40.82 -0.34 6.02 16 22 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 23 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 24 H 0.09 1.93 6.68 -52.49 -0.35 1.58 16 25 H 0.15 3.51 6.60 -52.49 -0.35 3.16 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.34 4.57 8.77 -39.29 -0.34 4.22 16 29 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16 32 H 0.07 1.21 7.33 -51.93 -0.38 0.83 16 LS Contribution 268.53 15.07 4.05 4.05 Total: -1.00 -28.75 268.53 -8.99 -37.74 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -3.92 Total: 8.93 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -3.84 Total: -22.53 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: -0.25 Total: -41.71 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.52 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.75 -8.99 -37.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240465127.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.122 kcal (2) G-P(sol) polarization free energy of solvation -28.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds