Wall clock time and date at job start Sun Mar 29 2020 21:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86807 * 119.99567 * 2 1 4 4 H 1.48499 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46863 * 299.99859 * 3 2 1 6 6 H 1.48494 * 109.47492 * 59.99339 * 3 2 1 7 7 C 1.40011 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99832 * 179.97438 * 7 2 1 9 9 C 1.41374 * 119.99914 * 0.02562 * 7 2 1 10 10 C 1.40733 * 119.75545 * 180.24536 * 9 7 2 11 11 C 1.38280 * 119.22138 * 180.27006 * 10 9 7 12 12 C 1.38677 * 118.70637 * 359.48281 * 11 10 9 13 13 C 1.40069 * 119.44726 * 0.25571 * 12 11 10 14 14 C 1.47714 * 119.62091 * 179.97438 * 13 12 11 15 15 C 1.31578 * 118.66280 * 185.49729 * 14 13 12 16 16 C 1.50169 * 123.04732 * 180.33955 * 15 14 13 17 17 N 1.46840 * 110.24768 * 342.92425 * 16 15 14 18 18 C 1.47209 * 110.26878 * 51.18917 * 17 16 15 19 19 C 1.50323 * 118.67122 * 5.23499 * 14 13 12 20 20 N 1.32390 * 120.74906 * 0.02562 * 13 12 11 21 21 H 0.96997 * 120.00312 * 0.02562 * 1 2 3 22 22 H 1.08007 * 120.39212 * 0.02562 * 10 9 7 23 23 H 1.08002 * 120.64487 * 179.76510 * 11 10 9 24 24 H 1.07995 * 120.27739 * 180.22685 * 12 11 10 25 25 H 1.08002 * 118.48026 * 0.31366 * 15 14 13 26 26 H 1.09001 * 109.34328 * 103.15419 * 16 15 14 27 27 H 1.08996 * 109.34482 * 222.84003 * 16 15 14 28 28 H 1.00898 * 110.99393 * 287.75724 * 17 16 15 29 29 H 1.09002 * 109.62770 * 50.39847 * 18 17 16 30 30 H 1.08994 * 109.62581 * 170.97156 * 18 17 16 31 31 H 1.09008 * 109.43132 * 283.53844 * 19 14 13 32 32 H 1.09002 * 109.43631 * 43.39064 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 3.7014 1.3467 -0.0006 5 1 1.8826 2.3965 -1.2126 6 1 1.8826 2.3967 1.2123 7 6 2.0077 -1.2125 0.0005 8 1 3.0877 -1.2124 0.0001 9 6 1.3009 -2.4369 0.0005 10 6 2.0098 -3.6526 0.0063 11 6 1.3073 -4.8437 0.0006 12 6 -0.0787 -4.7996 0.0002 13 6 -0.7282 -3.5585 0.0002 14 6 -2.2044 -3.5071 -0.0007 15 6 -2.7951 -2.3365 -0.1113 16 6 -4.2874 -2.1694 -0.1158 17 7 -4.9419 -3.4549 -0.3904 18 6 -4.4216 -4.4951 0.5120 19 6 -2.9710 -4.7946 0.1187 20 7 -0.0340 -2.4313 0.0001 21 1 -0.4850 0.8400 -0.0004 22 1 3.0898 -3.6553 0.0112 23 1 1.8281 -5.7899 0.0010 24 1 -0.6526 -5.7144 -0.0005 25 1 -2.1780 -1.4549 -0.2027 26 1 -4.6122 -1.7996 0.8568 27 1 -4.5681 -1.4520 -0.8869 28 1 -4.8235 -3.7218 -1.3562 29 1 -4.4597 -4.1392 1.5416 30 1 -5.0211 -5.3998 0.4120 31 1 -2.9515 -5.3183 -0.8372 32 1 -2.5117 -5.4206 0.8837 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240465127.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:53 Heat of formation + Delta-G solvation = 24.135719 kcal Electronic energy + Delta-G solvation = -15544.434757 eV Core-core repulsion = 13082.650590 eV Total energy + Delta-G solvation = -2461.784168 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.47926 -39.08635 -35.61805 -33.89257 -32.49883 -31.53005 -30.67418 -27.58537 -25.30978 -24.32667 -22.79595 -22.58160 -19.41588 -19.16570 -17.59166 -16.56150 -16.40520 -16.13645 -15.55896 -15.42503 -14.99844 -14.67513 -14.19621 -13.95784 -13.56765 -13.31361 -13.03692 -12.90211 -12.74405 -12.64137 -12.28708 -12.22667 -11.81163 -11.51214 -11.29624 -10.54972 -9.92728 -9.52443 -9.40750 -8.94463 -8.31685 -6.54053 0.41414 1.07422 1.37944 1.45534 1.52891 1.81670 2.20232 2.88054 3.37012 3.82855 3.94674 4.05334 4.20238 4.26970 4.40435 4.51853 4.65900 4.74503 4.81761 4.85374 4.92879 4.99273 5.03950 5.11381 5.21261 5.47949 5.58965 5.73788 5.85455 6.01583 6.05038 6.25394 6.35466 6.47174 6.72474 6.94201 8.14204 8.42404 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026810 B = 0.008732 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.133231 B = 3205.734704 C = 4197.095525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.025 3.975 3 Si 0.987 3.013 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.470 4.470 8 H 0.086 0.914 9 C 0.219 3.781 10 C -0.303 4.303 11 C -0.060 4.060 12 C -0.306 4.306 13 C 0.148 3.852 14 C -0.100 4.100 15 C -0.171 4.171 16 C 0.094 3.906 17 N -0.678 5.678 18 C 0.062 3.938 19 C -0.104 4.104 20 N -0.502 5.502 21 H 0.278 0.722 22 H 0.107 0.893 23 H 0.133 0.867 24 H 0.127 0.873 25 H 0.110 0.890 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.346 0.654 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.781 -3.899 -0.280 7.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.501 4.501 8 H 0.104 0.896 9 C 0.093 3.907 10 C -0.325 4.325 11 C -0.084 4.084 12 C -0.328 4.328 13 C 0.005 3.995 14 C -0.101 4.101 15 C -0.193 4.193 16 C -0.035 4.035 17 N -0.305 5.305 18 C -0.067 4.067 19 C -0.143 4.143 20 N -0.216 5.216 21 H 0.089 0.911 22 H 0.125 0.875 23 H 0.151 0.849 24 H 0.145 0.855 25 H 0.128 0.872 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.163 0.837 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.932 -2.820 0.112 8.419 hybrid contribution 2.323 -0.218 -0.348 2.359 sum -5.610 -3.038 -0.236 6.384 Atomic orbital electron populations 1.70188 1.08673 1.28833 1.29534 1.26951 0.95820 1.04354 0.92563 0.85089 0.79315 0.76042 0.78816 1.17988 1.19031 1.19073 1.19955 0.94618 0.90436 1.45127 0.89615 1.19073 0.88886 0.93433 0.89298 1.21974 0.99384 0.93919 1.17236 1.21229 0.94317 0.97409 0.95442 1.21671 0.94867 0.97647 1.18621 1.20790 0.94730 0.89944 0.94063 1.19918 0.90151 0.96364 1.03705 1.23878 0.98925 0.98712 0.97760 1.20926 0.86813 0.92909 1.02857 1.61151 1.57234 1.02883 1.09266 1.22184 0.91494 0.96015 0.97051 1.21079 0.96790 0.93780 1.02617 1.68776 1.07392 1.27007 1.18379 0.91142 0.87475 0.84882 0.85516 0.87213 0.89531 0.88954 0.83697 0.91325 0.87601 0.90222 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.48 10.94 21.83 0.24 -40.24 16 2 C 0.02 1.29 5.50 85.28 0.47 1.75 16 3 Si 0.99 38.79 29.56 68.60 2.03 40.82 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.47 -26.29 9.14 23.47 0.21 -26.07 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.49 16 9 C 0.22 12.64 6.55 40.27 0.26 12.90 16 10 C -0.30 -15.53 9.83 22.89 0.23 -15.31 16 11 C -0.06 -2.72 10.14 22.38 0.23 -2.49 16 12 C -0.31 -13.82 9.36 22.82 0.21 -13.61 16 13 C 0.15 7.41 6.69 42.01 0.28 7.69 16 14 C -0.10 -4.12 5.85 -18.06 -0.11 -4.23 16 15 C -0.17 -6.91 9.51 24.93 0.24 -6.67 16 16 C 0.09 2.83 6.74 85.40 0.58 3.40 16 17 N -0.68 -17.40 6.97 -517.81 -3.61 -21.01 16 18 C 0.06 1.53 6.65 86.33 0.57 2.10 16 19 C -0.10 -3.13 4.90 29.81 0.15 -2.98 16 20 N -0.50 -28.67 6.61 -178.51 -1.18 -29.85 16 21 H 0.28 13.49 8.29 -92.71 -0.77 12.72 16 22 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 23 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 24 H 0.13 4.81 6.68 -2.91 -0.02 4.79 16 25 H 0.11 5.39 6.60 -2.91 -0.02 5.37 16 26 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.35 8.27 8.77 -89.70 -0.79 7.48 16 29 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 30 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.08 2.28 7.33 -2.39 -0.02 2.27 16 Total: -1.00 -64.66 268.53 1.14 -63.52 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: 0.34 Total: 30.26 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 3.32 Total: -43.51 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -4.55 Total: -91.10 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.82 kcal Total: -64.66 1.14 -63.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240465127.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.659 kcal (2) G-P(sol) polarization free energy of solvation -64.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds