Wall clock time and date at job start Sun Mar 29 2020 21:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30732 * 1 3 3 Si 1.86807 * 119.99544 * 2 1 4 4 H 1.48499 * 109.47391 * 270.00119 * 3 2 1 5 5 H 1.48506 * 109.46925 * 30.00018 * 3 2 1 6 6 H 1.48495 * 109.46939 * 150.00100 * 3 2 1 7 7 C 1.40041 * 120.00559 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 163.27487 * 7 2 1 9 9 C 1.41527 * 120.00113 * 343.28008 * 7 2 1 10 10 C 1.41161 * 120.98529 * 156.04426 * 9 7 2 11 11 C 1.37745 * 119.11227 * 179.72770 * 10 9 7 12 12 N 1.31896 * 121.18697 * 359.97438 * 11 10 9 13 13 C 1.32939 * 122.18452 * 359.97438 * 12 11 10 14 14 C 1.47778 * 119.63222 * 180.02562 * 13 12 11 15 15 C 1.31503 * 118.66227 * 5.38820 * 14 13 12 16 16 C 1.50165 * 123.05347 * 180.02562 * 15 14 13 17 17 N 1.46828 * 110.31288 * 343.40232 * 16 15 14 18 18 C 1.47217 * 110.26545 * 50.97224 * 17 16 15 19 19 C 1.50331 * 118.65881 * 185.65369 * 14 13 12 20 20 C 1.39117 * 120.73155 * 359.97438 * 13 12 11 21 21 H 0.96996 * 120.00463 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.43610 * 359.70035 * 10 9 7 23 23 H 1.07999 * 119.40547 * 179.97438 * 11 10 9 24 24 H 1.08003 * 118.47374 * 0.33477 * 15 14 13 25 25 H 1.09000 * 109.48221 * 223.03712 * 16 15 14 26 26 H 1.09002 * 109.01534 * 103.47437 * 16 15 14 27 27 H 1.00901 * 111.00439 * 287.54617 * 17 16 15 28 28 H 1.08996 * 109.62950 * 170.99089 * 18 17 16 29 29 H 1.09002 * 109.78496 * 50.51191 * 18 17 16 30 30 H 1.09000 * 109.42949 * 283.53620 * 19 14 13 31 31 H 1.08999 * 109.43532 * 43.44290 * 19 14 13 32 32 H 1.07996 * 120.62251 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6179 0.0000 4 1 2.4887 2.0466 -1.4000 5 1 1.4385 2.6528 0.7001 6 1 3.5388 1.4404 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0534 -1.2323 -0.2697 9 6 1.3450 -2.4127 0.3515 10 6 1.8199 -3.6638 -0.0977 11 6 1.1483 -4.8079 0.2729 12 7 0.0747 -4.7525 1.0371 13 6 -0.4145 -3.6018 1.4885 14 6 -1.6209 -3.6053 2.3419 15 6 -2.1206 -4.7605 2.7230 16 6 -3.3417 -4.8790 3.5888 17 7 -3.6293 -3.5963 4.2428 18 6 -3.6547 -2.5112 3.2482 19 6 -2.2305 -2.2883 2.7341 20 6 0.1974 -2.3944 1.1673 21 1 -0.4850 0.8400 -0.0004 22 1 2.6979 -3.7230 -0.7239 23 1 1.5073 -5.7676 -0.0684 24 1 -1.6269 -5.6660 2.4022 25 1 -3.1757 -5.6425 4.3489 26 1 -4.1906 -5.1662 2.9682 27 1 -2.9584 -3.4033 4.9713 28 1 -4.0237 -1.5970 3.7130 29 1 -4.3041 -2.7873 2.4174 30 1 -1.6301 -1.8306 3.5203 31 1 -2.2566 -1.6282 1.8671 32 1 -0.2017 -1.4605 1.5346 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240465390.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:32 Heat of formation + Delta-G solvation = 12.909260 kcal Electronic energy + Delta-G solvation = -15463.905739 eV Core-core repulsion = 13001.634756 eV Total energy + Delta-G solvation = -2462.270983 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.61365 -39.16002 -36.07969 -34.00017 -32.58233 -31.68096 -30.17156 -27.92185 -25.37190 -24.36384 -22.98281 -22.57850 -19.82764 -18.84245 -17.60189 -16.83492 -16.28086 -16.22979 -15.63909 -15.48204 -15.12561 -14.77320 -14.40055 -14.11676 -13.70194 -13.34956 -13.23815 -13.05967 -12.93229 -12.70037 -12.31963 -12.01669 -11.91977 -11.57471 -11.29567 -10.50170 -10.00989 -9.91090 -9.45396 -8.94547 -8.71336 -6.61039 0.32278 0.95123 1.35649 1.42733 1.50734 1.73547 2.14970 2.75852 3.32094 3.67431 3.73390 3.98704 4.14542 4.19002 4.33315 4.53409 4.65117 4.74207 4.84418 4.87247 4.94553 4.98847 5.01970 5.11532 5.19723 5.36339 5.45102 5.60731 5.87404 5.95896 6.10387 6.17487 6.43769 6.48063 6.75555 6.75926 7.64243 8.20385 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027488 B = 0.008243 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.376829 B = 3395.861914 C = 4300.421982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.259 1.259 7 C -0.489 4.489 8 H 0.082 0.918 9 C 0.092 3.908 10 C -0.295 4.295 11 C 0.099 3.901 12 N -0.579 5.579 13 C 0.123 3.877 14 C -0.091 4.091 15 C -0.166 4.166 16 C 0.092 3.908 17 N -0.676 5.676 18 C 0.066 3.934 19 C -0.108 4.108 20 C -0.220 4.220 21 H 0.293 0.707 22 H 0.113 0.887 23 H 0.156 0.844 24 H 0.107 0.893 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.346 0.654 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.705 -0.634 5.642 7.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.182 1.182 7 C -0.519 4.519 8 H 0.100 0.900 9 C 0.084 3.916 10 C -0.318 4.318 11 C -0.057 4.057 12 N -0.295 5.295 13 C -0.007 4.007 14 C -0.092 4.092 15 C -0.187 4.187 16 C -0.037 4.037 17 N -0.304 5.304 18 C -0.064 4.064 19 C -0.147 4.147 20 C -0.242 4.242 21 H 0.104 0.896 22 H 0.131 0.869 23 H 0.173 0.827 24 H 0.125 0.875 25 H 0.123 0.877 26 H 0.110 0.890 27 H 0.163 0.837 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.061 -1.372 5.874 8.551 hybrid contribution 2.227 1.469 -1.076 2.877 sum -3.834 0.097 4.798 6.142 Atomic orbital electron populations 1.69799 1.09114 1.31169 1.33537 1.26860 0.95585 1.04703 0.90753 0.85136 0.79095 0.75387 0.79746 1.18440 1.18587 1.18246 1.19889 0.98166 0.91851 1.42019 0.89968 1.18272 0.91499 0.93548 0.88238 1.22134 1.05939 0.93965 1.09787 1.22358 0.91361 0.97863 0.94074 1.67443 1.15698 1.28562 1.17749 1.20156 0.95144 0.89207 0.96174 1.19812 0.94454 0.96315 0.98632 1.23572 0.98657 0.97394 0.99088 1.21025 0.93324 0.92848 0.96528 1.61156 1.54216 1.02263 1.12757 1.22073 0.93172 0.95768 0.95356 1.21014 0.98361 0.94052 1.01263 1.22326 1.00749 0.97695 1.03440 0.89559 0.86927 0.82719 0.87487 0.87733 0.89034 0.83660 0.88293 0.91005 0.91319 0.91861 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.93 10.94 21.84 0.24 -40.69 16 2 C 0.04 1.88 5.20 85.29 0.44 2.33 16 3 Si 0.99 36.67 29.59 68.60 2.03 38.70 16 4 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 5 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 7 C -0.49 -26.12 9.12 23.52 0.21 -25.90 16 8 H 0.08 4.20 7.90 -2.91 -0.02 4.18 16 9 C 0.09 5.09 5.60 -21.12 -0.12 4.97 16 10 C -0.30 -14.95 9.90 22.87 0.23 -14.73 16 11 C 0.10 4.66 11.15 84.57 0.94 5.60 16 12 N -0.58 -28.71 9.09 -185.67 -1.69 -30.39 16 13 C 0.12 6.18 6.68 41.71 0.28 6.46 16 14 C -0.09 -3.72 5.85 -17.98 -0.11 -3.83 16 15 C -0.17 -5.83 9.51 25.00 0.24 -5.59 16 16 C 0.09 2.36 6.74 85.40 0.58 2.94 16 17 N -0.68 -16.84 6.98 -518.17 -3.61 -20.46 16 18 C 0.07 1.78 6.63 86.26 0.57 2.35 16 19 C -0.11 -3.80 4.88 29.75 0.15 -3.65 16 20 C -0.22 -11.83 8.02 23.11 0.19 -11.65 16 21 H 0.29 13.20 8.29 -92.71 -0.77 12.43 16 22 H 0.11 5.22 8.06 -2.91 -0.02 5.20 16 23 H 0.16 6.04 8.06 -2.91 -0.02 6.01 16 24 H 0.11 4.09 7.12 -2.91 -0.02 4.07 16 25 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.35 8.10 8.77 -89.69 -0.79 7.31 16 28 H 0.10 2.24 8.14 -2.39 -0.02 2.23 16 29 H 0.07 1.97 8.08 -2.39 -0.02 1.96 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.06 2.53 7.35 -2.39 -0.02 2.51 16 32 H 0.12 6.66 4.86 -2.91 -0.01 6.65 16 Total: -1.00 -60.97 268.27 0.91 -60.06 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.35 Total: 33.48 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 3.60 Total: -40.69 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -5.06 Total: -91.54 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Total: -60.97 0.91 -60.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240465390.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.965 kcal (2) G-P(sol) polarization free energy of solvation -60.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds