Wall clock time and date at job start Sun Mar 29 2020 21:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30700 * 1 3 3 Si 1.86797 * 120.00115 * 2 1 4 4 H 1.48503 * 109.47308 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47149 * 299.99524 * 3 2 1 6 6 H 1.48501 * 109.47178 * 59.99522 * 3 2 1 7 7 C 1.40124 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99896 * 180.02562 * 7 2 1 9 9 C 1.40881 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.40940 * 119.65378 * 180.02562 * 9 7 2 11 11 C 1.36578 * 119.28043 * 179.75947 * 10 9 7 12 12 C 1.40525 * 118.58383 * 0.46748 * 11 10 9 13 13 C 1.47243 * 120.36398 * 179.79216 * 12 11 10 14 14 C 1.32073 * 118.70050 * 294.71733 * 13 12 11 15 15 C 1.50181 * 122.97854 * 180.35547 * 14 13 12 16 16 N 1.46828 * 110.24118 * 342.91195 * 15 14 13 17 17 C 1.47208 * 110.28584 * 51.27135 * 16 15 14 18 18 C 1.50771 * 118.62494 * 114.79061 * 13 12 11 19 19 C 1.40345 * 119.26143 * 359.51547 * 12 11 10 20 20 N 1.31122 * 120.65577 * 0.25305 * 19 12 11 21 21 H 0.97003 * 120.00158 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.36116 * 0.02562 * 10 9 7 23 23 H 1.07991 * 120.70404 * 180.25164 * 11 10 9 24 24 H 1.08003 * 118.51005 * 0.37341 * 14 13 12 25 25 H 1.09008 * 109.33979 * 222.67824 * 15 14 13 26 26 H 1.08996 * 109.21761 * 103.07264 * 15 14 13 27 27 H 1.00901 * 111.00370 * 287.82461 * 16 15 14 28 28 H 1.09002 * 109.62347 * 50.25230 * 17 16 15 29 29 H 1.09001 * 109.62577 * 170.62716 * 17 16 15 30 30 H 1.09004 * 109.67161 * 43.42695 * 18 13 12 31 31 H 1.08996 * 109.42801 * 283.42049 * 18 13 12 32 32 H 1.08003 * 119.67035 * 180.27412 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7011 1.3463 0.0006 5 1 1.8824 2.3964 -1.2126 6 1 1.8822 2.3965 1.2124 7 6 2.0076 -1.2135 0.0005 8 1 3.0877 -1.2135 0.0010 9 6 1.3032 -2.4336 0.0005 10 6 2.0152 -3.6499 0.0016 11 6 1.3246 -4.8282 0.0066 12 6 -0.0800 -4.7843 0.0005 13 6 -0.8636 -6.0309 0.0009 14 6 -0.7866 -6.8288 -1.0487 15 6 -1.5495 -8.1182 -1.1530 16 7 -2.0242 -8.5363 0.1720 17 6 -2.7368 -7.4297 0.8314 18 6 -1.7230 -6.3434 1.1996 19 6 -0.7274 -3.5391 -0.0002 20 7 -0.0351 -2.4255 -0.0002 21 1 -0.4850 0.8401 -0.0004 22 1 3.0952 -3.6502 0.0029 23 1 1.8468 -5.7734 0.0116 24 1 -0.1456 -6.5412 -1.8690 25 1 -0.8988 -8.8905 -1.5636 26 1 -2.4040 -7.9769 -1.8147 27 1 -1.2600 -8.8653 0.7428 28 1 -3.4833 -7.0185 0.1519 29 1 -3.2256 -7.7954 1.7344 30 1 -2.2531 -5.4448 1.5154 31 1 -1.0926 -6.6972 2.0154 32 1 -1.8067 -3.4976 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240467706.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:59 Heat of formation + Delta-G solvation = 38.585122 kcal Electronic energy + Delta-G solvation = -15177.427879 eV Core-core repulsion = 12716.270284 eV Total energy + Delta-G solvation = -2461.157595 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.85196 -37.66387 -33.94173 -32.30988 -30.71532 -30.36097 -29.06802 -25.76397 -23.47518 -22.77741 -21.68193 -20.93781 -17.94453 -17.51516 -15.91863 -15.59577 -14.60259 -14.45474 -14.30160 -14.13639 -13.21592 -13.09168 -12.68039 -12.49682 -12.17729 -11.97213 -11.77706 -11.28365 -11.20537 -11.08034 -10.88201 -10.62612 -10.36521 -9.99193 -9.45111 -8.55876 -8.34870 -8.21109 -7.59712 -7.42872 -6.49033 -4.59169 2.39731 2.82706 3.03314 3.04364 3.07713 3.17770 3.86618 4.45892 4.64121 5.17376 5.32169 5.45649 5.51980 5.67239 5.84822 5.89725 6.00411 6.01039 6.08364 6.12060 6.18728 6.38798 6.72840 6.77174 6.98838 7.02506 7.10611 7.30920 7.42378 7.48386 7.58124 7.75937 7.97588 8.14253 8.55977 8.84746 10.03844 10.21079 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.062969 B = 0.005559 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.556575 B = 5035.625683 C = 5256.890080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.708 5.708 2 C 0.066 3.934 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.422 4.422 8 H 0.085 0.915 9 C 0.253 3.747 10 C -0.275 4.275 11 C -0.039 4.039 12 C -0.280 4.280 13 C -0.019 4.019 14 C -0.234 4.234 15 C 0.093 3.907 16 N -0.685 5.685 17 C 0.055 3.945 18 C -0.120 4.120 19 C 0.149 3.851 20 N -0.487 5.487 21 H 0.274 0.726 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.103 0.897 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.338 0.662 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.254 -7.842 0.629 8.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.328 5.328 2 C -0.160 4.160 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.452 4.452 8 H 0.103 0.897 9 C 0.129 3.871 10 C -0.297 4.297 11 C -0.062 4.062 12 C -0.286 4.286 13 C -0.020 4.020 14 C -0.254 4.254 15 C -0.036 4.036 16 N -0.312 5.312 17 C -0.075 4.075 18 C -0.158 4.158 19 C -0.019 4.019 20 N -0.199 5.199 21 H 0.085 0.915 22 H 0.116 0.884 23 H 0.110 0.890 24 H 0.121 0.879 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.155 0.845 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.409 -7.156 0.380 7.935 hybrid contribution 1.692 0.595 0.202 1.805 sum -1.717 -6.561 0.582 6.807 Atomic orbital electron populations 1.70132 1.07321 1.27935 1.27453 1.26150 0.94942 1.01305 0.93603 0.86246 0.80856 0.80925 0.78697 1.18292 1.19684 1.19688 1.19694 0.94478 0.89575 1.41501 0.89663 1.18634 0.88472 0.91914 0.88055 1.21385 0.98718 0.93664 1.15978 1.20600 0.92840 0.96447 0.96347 1.19178 0.93127 0.92950 1.23336 1.19723 0.95220 0.93418 0.93634 1.23220 1.04173 0.98471 0.99500 1.20799 0.97688 0.93778 0.91332 1.61118 1.30786 1.34449 1.04879 1.22113 0.96192 0.90242 0.98964 1.21274 0.97604 1.00093 0.96878 1.22672 0.98339 0.87775 0.93113 1.68760 1.07091 1.26269 1.17785 0.91460 0.88395 0.89001 0.87893 0.90876 0.90693 0.84520 0.90919 0.90835 0.90451 0.91218 0.86600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.73 11.44 55.56 0.64 -18.09 16 2 C 0.07 1.67 5.50 -17.33 -0.10 1.58 16 3 Si 0.91 18.29 29.56 -169.99 -5.02 13.26 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.42 -11.24 9.11 -37.88 -0.35 -11.58 16 8 H 0.09 2.12 7.85 -52.48 -0.41 1.70 16 9 C 0.25 6.94 6.55 -84.98 -0.56 6.39 16 10 C -0.27 -6.80 9.76 -39.16 -0.38 -7.18 16 11 C -0.04 -0.88 9.77 -39.32 -0.38 -1.26 16 12 C -0.28 -6.24 5.20 -104.58 -0.54 -6.78 16 13 C -0.02 -0.34 5.33 -102.85 -0.55 -0.89 16 14 C -0.23 -3.90 9.54 -36.48 -0.35 -4.25 16 15 C 0.09 1.26 6.74 -5.27 -0.04 1.22 16 16 N -0.68 -8.88 6.97 -115.11 -0.80 -9.68 16 17 C 0.05 0.71 6.62 -3.61 -0.02 0.69 16 18 C -0.12 -1.85 5.95 -27.81 -0.17 -2.01 16 19 C 0.15 3.63 10.86 -17.06 -0.19 3.45 16 20 N -0.49 -13.49 7.83 -10.80 -0.08 -13.58 16 21 H 0.27 6.51 8.29 -40.82 -0.34 6.17 16 22 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 23 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 24 H 0.10 1.83 7.98 -52.48 -0.42 1.41 16 25 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.34 4.12 8.77 -39.29 -0.34 3.77 16 28 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.12 2.60 8.06 -52.48 -0.42 2.18 16 LS Contribution 273.82 15.07 4.13 4.13 Total: -1.00 -28.49 273.82 -8.87 -37.36 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.11 Total: 7.24 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -3.61 Total: -20.63 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: -0.25 Total: -41.36 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.02 Total: 13.26 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.49 -8.87 -37.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240467706.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.947 kcal (2) G-P(sol) polarization free energy of solvation -28.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds