Wall clock time and date at job start Sun Mar 29 2020 21:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30700 * 1 3 3 Si 1.86797 * 120.00115 * 2 1 4 4 H 1.48503 * 109.47308 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47149 * 299.99524 * 3 2 1 6 6 H 1.48501 * 109.47178 * 59.99522 * 3 2 1 7 7 C 1.40124 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99896 * 180.02562 * 7 2 1 9 9 C 1.40881 * 119.99862 * 0.02562 * 7 2 1 10 10 C 1.40940 * 119.65378 * 180.02562 * 9 7 2 11 11 C 1.36578 * 119.28043 * 179.75947 * 10 9 7 12 12 C 1.40525 * 118.58383 * 0.46748 * 11 10 9 13 13 C 1.47243 * 120.36398 * 179.79216 * 12 11 10 14 14 C 1.32073 * 118.70050 * 294.71733 * 13 12 11 15 15 C 1.50181 * 122.97854 * 180.35547 * 14 13 12 16 16 N 1.46828 * 110.24118 * 342.91195 * 15 14 13 17 17 C 1.47208 * 110.28584 * 51.27135 * 16 15 14 18 18 C 1.50771 * 118.62494 * 114.79061 * 13 12 11 19 19 C 1.40345 * 119.26143 * 359.51547 * 12 11 10 20 20 N 1.31122 * 120.65577 * 0.25305 * 19 12 11 21 21 H 0.97003 * 120.00158 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.36116 * 0.02562 * 10 9 7 23 23 H 1.07991 * 120.70404 * 180.25164 * 11 10 9 24 24 H 1.08003 * 118.51005 * 0.37341 * 14 13 12 25 25 H 1.09008 * 109.33979 * 222.67824 * 15 14 13 26 26 H 1.08996 * 109.21761 * 103.07264 * 15 14 13 27 27 H 1.00901 * 111.00370 * 287.82461 * 16 15 14 28 28 H 1.09002 * 109.62347 * 50.25230 * 17 16 15 29 29 H 1.09001 * 109.62577 * 170.62716 * 17 16 15 30 30 H 1.09004 * 109.67161 * 43.42695 * 18 13 12 31 31 H 1.08996 * 109.42801 * 283.42049 * 18 13 12 32 32 H 1.08003 * 119.67035 * 180.27412 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7011 1.3463 0.0006 5 1 1.8824 2.3964 -1.2126 6 1 1.8822 2.3965 1.2124 7 6 2.0076 -1.2135 0.0005 8 1 3.0877 -1.2135 0.0010 9 6 1.3032 -2.4336 0.0005 10 6 2.0152 -3.6499 0.0016 11 6 1.3246 -4.8282 0.0066 12 6 -0.0800 -4.7843 0.0005 13 6 -0.8636 -6.0309 0.0009 14 6 -0.7866 -6.8288 -1.0487 15 6 -1.5495 -8.1182 -1.1530 16 7 -2.0242 -8.5363 0.1720 17 6 -2.7368 -7.4297 0.8314 18 6 -1.7230 -6.3434 1.1996 19 6 -0.7274 -3.5391 -0.0002 20 7 -0.0351 -2.4255 -0.0002 21 1 -0.4850 0.8401 -0.0004 22 1 3.0952 -3.6502 0.0029 23 1 1.8468 -5.7734 0.0116 24 1 -0.1456 -6.5412 -1.8690 25 1 -0.8988 -8.8905 -1.5636 26 1 -2.4040 -7.9769 -1.8147 27 1 -1.2600 -8.8653 0.7428 28 1 -3.4833 -7.0185 0.1519 29 1 -3.2256 -7.7954 1.7344 30 1 -2.2531 -5.4448 1.5154 31 1 -1.0926 -6.6972 2.0154 32 1 -1.8067 -3.4976 -0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240467706.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:58 Heat of formation + Delta-G solvation = 20.711781 kcal Electronic energy + Delta-G solvation = -15178.202925 eV Core-core repulsion = 12716.270284 eV Total energy + Delta-G solvation = -2461.932641 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.44589 -39.17585 -35.73691 -33.87777 -32.51216 -31.64031 -30.78094 -27.52872 -24.84872 -24.09179 -23.48030 -22.62082 -19.51531 -19.14668 -17.56109 -17.22710 -16.19528 -15.93827 -15.71825 -15.56741 -14.70742 -14.56014 -14.22735 -14.10339 -13.70626 -13.44424 -13.26947 -12.87774 -12.78670 -12.71344 -12.32482 -12.19571 -11.81265 -11.61569 -11.24604 -10.27035 -10.02118 -9.55766 -9.36275 -9.19042 -8.35704 -6.55545 0.67612 1.10170 1.34259 1.38187 1.54364 1.55134 2.18864 2.77176 3.40788 3.81902 4.03191 4.11437 4.13776 4.21048 4.34413 4.37018 4.57667 4.73257 4.79883 4.85661 4.88134 4.98750 4.99330 5.09933 5.16959 5.42912 5.51258 5.67248 5.86845 5.99937 6.06970 6.18234 6.23035 6.47929 6.65429 6.89481 8.11574 8.37321 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.062969 B = 0.005559 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.556575 B = 5035.625683 C = 5256.890080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.021 3.979 3 Si 0.991 3.009 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.460 4.460 8 H 0.091 0.909 9 C 0.218 3.782 10 C -0.289 4.289 11 C -0.044 4.044 12 C -0.262 4.262 13 C -0.049 4.049 14 C -0.210 4.210 15 C 0.096 3.904 16 N -0.680 5.680 17 C 0.062 3.938 18 C -0.113 4.113 19 C 0.123 3.877 20 N -0.521 5.521 21 H 0.281 0.719 22 H 0.110 0.890 23 H 0.120 0.880 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.346 0.654 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.330 -9.304 0.618 9.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.201 4.201 3 Si 0.811 3.189 4 H -0.176 1.176 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.491 4.491 8 H 0.109 0.891 9 C 0.094 3.906 10 C -0.312 4.312 11 C -0.068 4.068 12 C -0.267 4.267 13 C -0.050 4.050 14 C -0.230 4.230 15 C -0.033 4.033 16 N -0.308 5.308 17 C -0.068 4.068 18 C -0.152 4.152 19 C -0.042 4.042 20 N -0.234 5.234 21 H 0.092 0.908 22 H 0.128 0.872 23 H 0.138 0.862 24 H 0.108 0.892 25 H 0.114 0.886 26 H 0.102 0.898 27 H 0.163 0.837 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.500 -8.661 0.373 9.349 hybrid contribution 1.661 0.840 0.156 1.868 sum -1.839 -7.821 0.528 8.052 Atomic orbital electron populations 1.70223 1.09109 1.29348 1.28681 1.27104 0.95754 1.04828 0.92408 0.85030 0.79391 0.75555 0.78951 1.17558 1.18948 1.18902 1.20045 0.94998 0.90552 1.43522 0.89068 1.19088 0.88900 0.93389 0.89227 1.21584 0.99480 0.93739 1.16369 1.20953 0.93309 0.96952 0.95543 1.19567 0.93472 0.94020 1.19644 1.19755 0.96833 0.92444 0.95964 1.23456 1.02601 0.99103 0.97882 1.20885 0.97927 0.92403 0.92077 1.61139 1.30985 1.33901 1.04729 1.22108 0.95354 0.89378 0.99939 1.21233 0.97699 1.00668 0.95612 1.22997 0.98971 0.88336 0.93910 1.68681 1.07683 1.28061 1.18939 0.90818 0.87235 0.86213 0.89236 0.88623 0.89788 0.83704 0.91102 0.88532 0.91471 0.90866 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.14 11.44 21.85 0.25 -40.89 16 2 C 0.02 1.09 5.50 85.32 0.47 1.56 16 3 Si 0.99 38.02 29.56 68.60 2.03 40.05 16 4 H -0.25 -9.25 7.11 99.48 0.71 -8.55 16 5 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 7 C -0.46 -25.35 9.11 23.38 0.21 -25.13 16 8 H 0.09 4.67 7.85 -2.91 -0.02 4.64 16 9 C 0.22 12.41 6.55 40.15 0.26 12.67 16 10 C -0.29 -14.57 9.76 22.54 0.22 -14.35 16 11 C -0.04 -1.98 9.77 22.44 0.22 -1.76 16 12 C -0.26 -11.61 5.20 -19.84 -0.10 -11.72 16 13 C -0.05 -1.71 5.33 -18.42 -0.10 -1.81 16 14 C -0.21 -6.52 9.54 24.57 0.23 -6.29 16 15 C 0.10 2.26 6.74 85.41 0.58 2.83 16 16 N -0.68 -15.09 6.97 -518.10 -3.61 -18.70 16 17 C 0.06 1.42 6.62 86.27 0.57 1.99 16 18 C -0.11 -3.28 5.95 29.90 0.18 -3.10 16 19 C 0.12 6.19 10.86 85.31 0.93 7.12 16 20 N -0.52 -29.97 7.83 -188.07 -1.47 -31.44 16 21 H 0.28 13.76 8.29 -92.71 -0.77 12.99 16 22 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 23 H 0.12 4.65 8.06 -2.92 -0.02 4.63 16 24 H 0.09 3.02 7.98 -2.91 -0.02 3.00 16 25 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.35 7.07 8.77 -89.69 -0.79 6.29 16 28 H 0.07 1.68 8.07 -2.39 -0.02 1.66 16 29 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 2.07 8.07 -2.38 -0.02 2.05 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.13 5.85 8.06 -2.91 -0.02 5.82 16 Total: -1.00 -63.07 273.82 1.19 -61.88 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.33 Total: 27.08 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 3.67 Total: -37.98 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -4.83 Total: -91.03 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -63.07 1.19 -61.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240467706.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.588 kcal (2) G-P(sol) polarization free energy of solvation -63.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds