Wall clock time and date at job start Sun Mar 29 2020 21:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30681 * 1 3 3 Si 1.86803 * 120.00288 * 2 1 4 4 H 1.48500 * 109.46971 * 270.00301 * 3 2 1 5 5 H 1.48502 * 109.46637 * 30.00462 * 3 2 1 6 6 H 1.48505 * 109.46983 * 150.00020 * 3 2 1 7 7 C 1.40178 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99984 * 179.97438 * 7 2 1 9 9 C 1.40682 * 119.99609 * 0.02562 * 7 2 1 10 10 N 1.33717 * 119.96621 * 0.23780 * 9 7 2 11 11 C 1.31253 * 121.66198 * 180.29080 * 10 9 7 12 12 C 1.39125 * 121.39502 * 359.73140 * 11 10 9 13 13 C 1.38261 * 119.76284 * 359.97438 * 12 11 10 14 14 C 1.39971 * 118.45222 * 359.97438 * 13 12 11 15 15 C 1.47075 * 120.67401 * 179.97438 * 14 13 12 16 16 C 1.32187 * 118.70628 * 104.99595 * 15 14 13 17 17 C 1.50186 * 122.95935 * 180.32224 * 16 15 14 18 18 N 1.46832 * 110.24104 * 342.91829 * 17 16 15 19 19 C 1.47206 * 110.28993 * 51.28437 * 18 17 16 20 20 C 1.50344 * 118.70343 * 285.00077 * 15 14 13 21 21 H 0.97003 * 119.99915 * 0.02562 * 1 2 3 22 22 H 1.07997 * 119.29814 * 179.74938 * 11 10 9 23 23 H 1.07998 * 120.11843 * 180.02562 * 12 11 10 24 24 H 1.08004 * 120.77507 * 179.97438 * 13 12 11 25 25 H 1.07996 * 118.51855 * 0.60583 * 16 15 14 26 26 H 1.09001 * 109.33789 * 103.15405 * 17 16 15 27 27 H 1.08999 * 109.34295 * 222.83476 * 17 16 15 28 28 H 1.00905 * 110.99613 * 287.83750 * 18 17 16 29 29 H 1.09001 * 109.62134 * 50.21924 * 19 18 17 30 30 H 1.08995 * 109.62359 * 170.59601 * 19 18 17 31 31 H 1.08997 * 109.43644 * 43.38710 * 20 15 14 32 32 H 1.09003 * 109.39432 * 283.49970 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4383 2.6526 0.7002 6 1 3.5385 1.4400 0.7001 7 6 2.0077 -1.2140 -0.0005 8 1 3.0876 -1.2140 -0.0010 9 6 1.3042 -2.4323 -0.0016 10 7 -0.0330 -2.4314 -0.0070 11 6 -0.7227 -3.5481 -0.0025 12 6 -0.0932 -4.7887 0.0025 13 6 1.2877 -4.8577 0.0022 14 6 2.0151 -3.6619 -0.0037 15 6 3.4858 -3.6782 -0.0036 16 6 4.1239 -3.3908 -1.1250 17 6 5.6218 -3.3861 -1.2345 18 7 6.2287 -3.3319 0.1014 19 6 5.6597 -4.3808 0.9634 20 6 4.2041 -4.0213 1.2718 21 1 -0.4850 0.8401 -0.0004 22 1 -1.8017 -3.5028 -0.0029 23 1 -0.6810 -5.6947 0.0057 24 1 1.7933 -5.8121 0.0065 25 1 3.5421 -3.1440 -2.0007 26 1 5.9494 -4.2926 -1.7435 27 1 5.9391 -2.5153 -1.8083 28 1 6.1100 -2.4195 0.5157 29 1 5.6984 -5.3399 0.4469 30 1 6.2291 -4.4412 1.8908 31 1 3.7136 -4.8708 1.7470 32 1 4.1769 -3.1640 1.9444 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240469602.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:46 Heat of formation + Delta-G solvation = 22.669976 kcal Electronic energy + Delta-G solvation = -15728.797567 eV Core-core repulsion = 13266.949840 eV Total energy + Delta-G solvation = -2461.847727 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.44599 -39.05431 -35.56564 -34.21606 -32.21053 -31.61259 -30.46367 -27.60833 -25.13073 -23.96106 -23.29813 -22.53766 -19.39401 -19.16923 -17.54409 -17.06862 -16.15733 -16.09729 -15.68779 -15.51850 -14.71083 -14.59257 -14.12279 -14.00698 -13.62925 -13.36666 -13.23433 -12.89858 -12.83253 -12.68555 -12.26290 -12.11786 -11.74474 -11.67050 -11.27518 -10.13059 -9.78681 -9.50286 -9.40101 -9.16641 -8.32333 -6.50442 0.78711 1.07645 1.36444 1.44235 1.49136 1.51973 2.18268 2.81409 3.43079 3.84400 4.09031 4.15356 4.22445 4.30002 4.40734 4.45124 4.60870 4.75020 4.76568 4.85416 4.94723 4.99777 5.01621 5.13386 5.21582 5.45861 5.61193 5.73305 5.91934 6.03104 6.14561 6.25117 6.29031 6.45154 6.70862 6.97368 8.15853 8.40274 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.012192 C = 0.007998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.188470 B = 2296.007958 C = 3499.984767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.022 3.978 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.251 1.251 7 C -0.447 4.447 8 H 0.089 0.911 9 C 0.232 3.768 10 N -0.523 5.523 11 C 0.101 3.899 12 C -0.314 4.314 13 C -0.053 4.053 14 C -0.241 4.241 15 C -0.039 4.039 16 C -0.209 4.209 17 C 0.099 3.901 18 N -0.679 5.679 19 C 0.065 3.935 20 C -0.112 4.112 21 H 0.279 0.721 22 H 0.135 0.865 23 H 0.125 0.875 24 H 0.122 0.878 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.342 0.658 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.703 -3.631 0.691 9.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.175 1.175 7 C -0.478 4.478 8 H 0.107 0.893 9 C 0.108 3.892 10 N -0.236 5.236 11 C -0.064 4.064 12 C -0.337 4.337 13 C -0.077 4.077 14 C -0.245 4.245 15 C -0.040 4.040 16 C -0.229 4.229 17 C -0.030 4.030 18 N -0.307 5.307 19 C -0.065 4.065 20 C -0.150 4.150 21 H 0.089 0.911 22 H 0.152 0.848 23 H 0.143 0.857 24 H 0.140 0.860 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.159 0.841 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.682 -3.045 0.506 9.215 hybrid contribution -1.137 0.209 0.058 1.158 sum 7.545 -2.836 0.565 8.080 Atomic orbital electron populations 1.70215 1.08988 1.29125 1.29310 1.27060 0.95663 1.04656 0.92569 0.85233 0.79288 0.75901 0.79556 1.18746 1.19287 1.17482 1.19787 0.94727 0.90034 1.43241 0.89333 1.19087 0.88263 0.92658 0.89190 1.68660 1.08096 1.28304 1.18550 1.23000 0.99774 0.89240 0.94411 1.21534 0.95174 0.98223 1.18724 1.21258 0.93949 0.96584 0.95920 1.19956 0.94001 0.93711 1.16876 1.19525 0.91098 0.98301 0.95051 1.23337 0.98158 1.03979 0.97392 1.20853 0.87230 1.03128 0.91837 1.61184 1.57408 1.08569 1.03527 1.22113 0.90702 0.95546 0.98127 1.21138 0.97655 1.01398 0.94834 0.91053 0.84788 0.85722 0.86037 0.90368 0.89201 0.89407 0.84083 0.90491 0.88476 0.91024 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.30 11.46 21.86 0.25 -41.05 16 2 C 0.02 1.16 5.50 85.34 0.47 1.63 16 3 Si 0.98 38.24 29.56 68.60 2.03 40.26 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 7 C -0.45 -24.14 8.65 23.34 0.20 -23.94 16 8 H 0.09 4.52 6.46 -2.91 -0.02 4.50 16 9 C 0.23 12.92 6.58 40.39 0.27 13.19 16 10 N -0.52 -29.96 7.85 -188.31 -1.48 -31.44 16 11 C 0.10 5.05 11.17 84.99 0.95 6.00 16 12 C -0.31 -13.99 10.10 22.49 0.23 -13.76 16 13 C -0.05 -2.37 9.92 22.70 0.23 -2.14 16 14 C -0.24 -11.65 5.18 -19.60 -0.10 -11.75 16 15 C -0.04 -1.56 4.15 -18.67 -0.08 -1.63 16 16 C -0.21 -7.77 8.92 24.51 0.22 -7.55 16 17 C 0.10 2.80 6.74 85.41 0.58 3.38 16 18 N -0.68 -18.10 6.97 -518.11 -3.61 -21.72 16 19 C 0.06 1.66 6.64 86.27 0.57 2.23 16 20 C -0.11 -3.68 5.93 29.76 0.18 -3.50 16 21 H 0.28 13.79 8.29 -92.71 -0.77 13.03 16 22 H 0.13 5.93 8.06 -2.91 -0.02 5.90 16 23 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 24 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 25 H 0.08 3.29 7.98 -2.91 -0.02 3.27 16 26 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.34 9.21 8.77 -89.69 -0.79 8.42 16 29 H 0.08 1.89 8.07 -2.39 -0.02 1.87 16 30 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -62.92 271.10 1.23 -61.69 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.34 Total: 30.10 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 3.70 Total: -37.85 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -4.84 Total: -94.20 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.26 kcal Total: -62.92 1.23 -61.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240469602.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.361 kcal (2) G-P(sol) polarization free energy of solvation -62.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds