Wall clock time and date at job start Sun Mar 29 2020 21:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86795 * 120.00162 * 2 1 4 4 H 1.48501 * 109.47262 * 90.00110 * 3 2 1 5 5 H 1.48505 * 109.47245 * 210.00132 * 3 2 1 6 6 H 1.48504 * 109.46905 * 329.99793 * 3 2 1 7 7 C 1.40038 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99826 * 15.80461 * 7 2 1 9 9 C 1.41427 * 119.99842 * 195.80192 * 7 2 1 10 10 C 1.40446 * 119.76684 * 188.66114 * 9 7 2 11 11 C 1.39521 * 118.80608 * 179.71270 * 10 9 7 12 12 C 1.47804 * 120.83827 * 180.26381 * 11 10 9 13 13 C 1.31495 * 118.66122 * 295.02798 * 12 11 10 14 14 C 1.50171 * 123.05644 * 180.11316 * 13 12 11 15 15 N 1.46833 * 110.30819 * 343.37370 * 14 13 12 16 16 C 1.47213 * 110.26244 * 50.98591 * 15 14 13 17 17 C 1.50331 * 118.66216 * 115.29866 * 12 11 10 18 18 C 1.40226 * 118.31689 * 0.55492 * 11 10 9 19 19 C 1.38453 * 119.39968 * 359.72910 * 18 11 10 20 20 N 1.31484 * 121.17058 * 359.97438 * 19 18 11 21 21 H 0.97009 * 120.00259 * 174.80450 * 1 2 3 22 22 H 1.07996 * 120.59444 * 359.97438 * 10 9 7 23 23 H 1.08008 * 118.46991 * 0.34408 * 13 12 11 24 24 H 1.09003 * 109.46612 * 223.01550 * 14 13 12 25 25 H 1.09002 * 109.02489 * 103.45353 * 14 13 12 26 26 H 1.00902 * 110.99786 * 287.55706 * 15 14 13 27 27 H 1.08997 * 109.62628 * 170.99203 * 16 15 14 28 28 H 1.09003 * 109.78467 * 50.51073 * 16 15 14 29 29 H 1.08991 * 109.43495 * 283.51693 * 17 12 11 30 30 H 1.09000 * 109.43057 * 43.42393 * 17 12 11 31 31 H 1.08001 * 120.29645 * 179.70396 * 18 11 10 32 32 H 1.07999 * 119.40876 * 180.02562 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4889 2.0464 1.4001 5 1 3.5389 1.4401 -0.7001 6 1 1.4388 2.6526 -0.7001 7 6 2.0075 -1.2128 0.0005 8 1 1.4981 -2.1305 -0.2538 9 6 3.3817 -1.2357 0.3341 10 6 4.1222 -2.4161 0.1583 11 6 5.4779 -2.4145 0.4881 12 6 6.3010 -3.6300 0.3156 13 6 6.0256 -4.6873 1.0472 14 6 6.7985 -5.9715 0.9544 15 7 7.5855 -6.0043 -0.2848 16 6 8.3782 -4.7711 -0.4180 17 6 7.4229 -3.6050 -0.6848 18 6 6.0382 -1.2325 0.9933 19 6 5.2395 -0.1116 1.1431 20 7 3.9653 -0.1357 0.8196 21 1 -0.4851 -0.8366 -0.0761 22 1 3.6517 -3.3076 -0.2292 23 1 5.2029 -4.6307 1.7447 24 1 6.1064 -6.8136 0.9650 25 1 7.4694 -6.0450 1.8103 26 1 6.9898 -6.1399 -1.0879 27 1 9.0746 -4.8716 -1.2505 28 1 8.9322 -4.5872 0.5026 29 1 7.0136 -3.6945 -1.6910 30 1 7.9664 -2.6643 -0.5967 31 1 7.0833 -1.1970 1.2634 32 1 5.6710 0.7990 1.5317 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240469873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:23 Heat of formation + Delta-G solvation = 22.107221 kcal Electronic energy + Delta-G solvation = -15296.608600 eV Core-core repulsion = 12834.736470 eV Total energy + Delta-G solvation = -2461.872130 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.22055 -38.04247 -34.03356 -33.08906 -30.81890 -30.37273 -29.45967 -25.55533 -24.14081 -23.16609 -21.82930 -20.84535 -18.71859 -17.78611 -16.20435 -15.15457 -14.96709 -14.71327 -14.57922 -14.16368 -13.55412 -13.45635 -12.97095 -12.67367 -12.35268 -12.34440 -12.16158 -11.66917 -11.38427 -10.96852 -10.73098 -10.65077 -10.03509 -9.78779 -9.19020 -8.92046 -8.51673 -8.19595 -8.02255 -7.81802 -7.29533 -4.80906 2.07484 2.52006 2.71720 3.53520 3.61566 3.92746 4.25444 4.36872 4.52747 4.94060 5.06207 5.13061 5.23415 5.45355 5.50616 5.65328 5.69967 5.76631 5.87369 5.89366 6.00884 6.20297 6.42106 6.51256 6.62322 6.87843 6.95630 7.09661 7.21901 7.29358 7.37063 7.42608 7.65159 8.04031 8.26277 8.60098 9.47847 9.94717 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.046111 B = 0.006616 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.088803 B = 4231.110215 C = 4580.266600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.049 3.951 3 Si 1.145 2.855 4 H -0.284 1.284 5 H -0.281 1.281 6 H -0.327 1.327 7 C -0.479 4.479 8 H 0.081 0.919 9 C 0.251 3.749 10 C -0.247 4.247 11 C 0.008 3.992 12 C -0.061 4.061 13 C -0.203 4.203 14 C 0.090 3.910 15 N -0.684 5.684 16 C 0.056 3.944 17 C -0.117 4.117 18 C -0.304 4.304 19 C 0.147 3.853 20 N -0.571 5.571 21 H 0.284 0.716 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.341 0.659 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.648 -6.775 -0.401 13.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.173 4.173 3 Si 0.977 3.023 4 H -0.211 1.211 5 H -0.208 1.208 6 H -0.259 1.259 7 C -0.510 4.510 8 H 0.099 0.901 9 C 0.128 3.872 10 C -0.269 4.269 11 C 0.002 3.998 12 C -0.061 4.061 13 C -0.222 4.222 14 C -0.039 4.039 15 N -0.312 5.312 16 C -0.074 4.074 17 C -0.156 4.156 18 C -0.327 4.327 19 C -0.014 4.014 20 N -0.290 5.290 21 H 0.095 0.905 22 H 0.121 0.879 23 H 0.127 0.873 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.158 0.842 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.120 0.880 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.324 -4.934 0.037 12.352 hybrid contribution -0.246 -1.886 -0.269 1.921 sum 11.078 -6.820 -0.232 13.011 Atomic orbital electron populations 1.70621 1.08292 1.33018 1.30309 1.27731 0.95179 1.06092 0.88308 0.82103 0.72512 0.69803 0.77852 1.21148 1.20778 1.25930 1.20725 0.93269 0.96944 1.40103 0.90127 1.18513 0.93348 0.86968 0.88366 1.21733 0.93074 0.99726 1.12380 1.18879 0.92931 0.92136 0.95805 1.19847 0.96003 0.93325 0.96954 1.23190 1.01657 0.95553 1.01840 1.20866 0.95140 0.94718 0.93200 1.61097 1.28424 1.36336 1.05293 1.22116 0.95517 0.87488 1.02281 1.21121 0.95659 1.00689 0.98122 1.21148 0.99702 0.94683 1.17156 1.22039 0.89753 0.96260 0.93339 1.66751 1.11879 1.28854 1.21477 0.90482 0.87943 0.87311 0.90099 0.90184 0.84164 0.90404 0.90782 0.90752 0.90161 0.88032 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.91 13.65 55.55 0.76 -21.15 16 2 C 0.05 1.34 5.51 -17.35 -0.10 1.24 16 3 Si 1.14 28.14 25.93 -169.99 -4.41 23.73 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.28 -6.94 6.54 56.52 0.37 -6.57 16 6 H -0.33 -7.82 7.11 56.52 0.40 -7.42 16 7 C -0.48 -13.19 9.51 -37.69 -0.36 -13.55 16 8 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 9 C 0.25 6.63 6.27 -85.03 -0.53 6.10 16 10 C -0.25 -5.88 9.52 -38.27 -0.36 -6.24 16 11 C 0.01 0.18 5.19 -104.76 -0.54 -0.37 16 12 C -0.06 -1.03 5.36 -102.73 -0.55 -1.58 16 13 C -0.20 -3.14 9.52 -36.40 -0.35 -3.48 16 14 C 0.09 1.10 6.74 -5.27 -0.04 1.07 16 15 N -0.68 -8.07 6.98 -115.11 -0.80 -8.87 16 16 C 0.06 0.64 6.64 -3.61 -0.02 0.62 16 17 C -0.12 -1.63 5.92 -28.02 -0.17 -1.80 16 18 C -0.30 -6.30 9.82 -38.76 -0.38 -6.68 16 19 C 0.15 3.28 11.16 -17.62 -0.20 3.09 16 20 N -0.57 -14.68 5.01 -11.22 -0.06 -14.73 16 21 H 0.28 7.42 8.73 -40.82 -0.36 7.07 16 22 H 0.10 2.36 8.06 -52.49 -0.42 1.93 16 23 H 0.11 1.82 7.98 -52.48 -0.42 1.40 16 24 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.34 3.84 8.77 -39.29 -0.34 3.49 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 31 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 269.93 15.07 4.07 4.07 Total: -1.00 -28.75 269.93 -8.21 -36.96 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -4.17 Total: 1.58 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -3.60 Total: -21.59 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.10 Total: -44.75 kcal Atomic # 14 Polarization: 28.14 SS G_CDS: -4.41 Total: 23.73 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.75 -8.21 -36.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240469873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.066 kcal (2) G-P(sol) polarization free energy of solvation -28.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds