Wall clock time and date at job start Sun Mar 29 2020 21:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86795 * 120.00162 * 2 1 4 4 H 1.48501 * 109.47262 * 90.00110 * 3 2 1 5 5 H 1.48505 * 109.47245 * 210.00132 * 3 2 1 6 6 H 1.48504 * 109.46905 * 329.99793 * 3 2 1 7 7 C 1.40038 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99826 * 15.80461 * 7 2 1 9 9 C 1.41427 * 119.99842 * 195.80192 * 7 2 1 10 10 C 1.40446 * 119.76684 * 188.66114 * 9 7 2 11 11 C 1.39521 * 118.80608 * 179.71270 * 10 9 7 12 12 C 1.47804 * 120.83827 * 180.26381 * 11 10 9 13 13 C 1.31495 * 118.66122 * 295.02798 * 12 11 10 14 14 C 1.50171 * 123.05644 * 180.11316 * 13 12 11 15 15 N 1.46833 * 110.30819 * 343.37370 * 14 13 12 16 16 C 1.47213 * 110.26244 * 50.98591 * 15 14 13 17 17 C 1.50331 * 118.66216 * 115.29866 * 12 11 10 18 18 C 1.40226 * 118.31689 * 0.55492 * 11 10 9 19 19 C 1.38453 * 119.39968 * 359.72910 * 18 11 10 20 20 N 1.31484 * 121.17058 * 359.97438 * 19 18 11 21 21 H 0.97009 * 120.00259 * 174.80450 * 1 2 3 22 22 H 1.07996 * 120.59444 * 359.97438 * 10 9 7 23 23 H 1.08008 * 118.46991 * 0.34408 * 13 12 11 24 24 H 1.09003 * 109.46612 * 223.01550 * 14 13 12 25 25 H 1.09002 * 109.02489 * 103.45353 * 14 13 12 26 26 H 1.00902 * 110.99786 * 287.55706 * 15 14 13 27 27 H 1.08997 * 109.62628 * 170.99203 * 16 15 14 28 28 H 1.09003 * 109.78467 * 50.51073 * 16 15 14 29 29 H 1.08991 * 109.43495 * 283.51693 * 17 12 11 30 30 H 1.09000 * 109.43057 * 43.42393 * 17 12 11 31 31 H 1.08001 * 120.29645 * 179.70396 * 18 11 10 32 32 H 1.07999 * 119.40876 * 180.02562 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4889 2.0464 1.4001 5 1 3.5389 1.4401 -0.7001 6 1 1.4388 2.6526 -0.7001 7 6 2.0075 -1.2128 0.0005 8 1 1.4981 -2.1305 -0.2538 9 6 3.3817 -1.2357 0.3341 10 6 4.1222 -2.4161 0.1583 11 6 5.4779 -2.4145 0.4881 12 6 6.3010 -3.6300 0.3156 13 6 6.0256 -4.6873 1.0472 14 6 6.7985 -5.9715 0.9544 15 7 7.5855 -6.0043 -0.2848 16 6 8.3782 -4.7711 -0.4180 17 6 7.4229 -3.6050 -0.6848 18 6 6.0382 -1.2325 0.9933 19 6 5.2395 -0.1116 1.1431 20 7 3.9653 -0.1357 0.8196 21 1 -0.4851 -0.8366 -0.0761 22 1 3.6517 -3.3076 -0.2292 23 1 5.2029 -4.6307 1.7447 24 1 6.1064 -6.8136 0.9650 25 1 7.4694 -6.0450 1.8103 26 1 6.9898 -6.1399 -1.0879 27 1 9.0746 -4.8716 -1.2505 28 1 8.9322 -4.5872 0.5026 29 1 7.0136 -3.6945 -1.6910 30 1 7.9664 -2.6643 -0.5967 31 1 7.0833 -1.1970 1.2634 32 1 5.6710 0.7990 1.5317 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240469873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:22 Heat of formation + Delta-G solvation = 3.721631 kcal Electronic energy + Delta-G solvation = -15297.405859 eV Core-core repulsion = 12834.736470 eV Total energy + Delta-G solvation = -2462.669389 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.76633 -39.43934 -35.90586 -34.62686 -32.35891 -31.76363 -30.95948 -27.47186 -25.41824 -24.31613 -23.37351 -22.60934 -20.49546 -19.12291 -17.73823 -16.99185 -16.49862 -16.04127 -15.79999 -15.65960 -15.11863 -14.89234 -14.48767 -14.34703 -14.10268 -13.79886 -13.43475 -13.10540 -12.72840 -12.53005 -12.38247 -11.89476 -11.82078 -11.72184 -11.20223 -10.48258 -9.94988 -9.81065 -9.63415 -9.50470 -9.28188 -6.85247 0.49273 0.64339 1.21256 1.54820 1.66807 1.97818 2.41408 2.57502 3.28904 3.49753 3.77967 3.90205 3.94086 4.08579 4.26582 4.42744 4.52154 4.59625 4.62705 4.65456 4.71849 4.85146 4.92870 5.01415 5.16289 5.26767 5.33756 5.48228 5.61059 5.74342 5.91536 5.97254 5.99556 6.33540 6.38650 6.62180 7.57319 7.90002 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.046111 B = 0.006616 C = 0.006112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.088803 B = 4231.110215 C = 4580.266600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.021 3.979 3 Si 1.179 2.821 4 H -0.282 1.282 5 H -0.284 1.284 6 H -0.319 1.319 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.237 3.763 10 C -0.269 4.269 11 C 0.016 3.984 12 C -0.087 4.087 13 C -0.185 4.185 14 C 0.094 3.906 15 N -0.682 5.682 16 C 0.062 3.938 17 C -0.111 4.111 18 C -0.283 4.283 19 C 0.130 3.870 20 N -0.592 5.592 21 H 0.280 0.720 22 H 0.098 0.902 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.345 0.655 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.075 -7.398 -0.022 16.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.196 4.196 3 Si 1.009 2.991 4 H -0.209 1.209 5 H -0.212 1.212 6 H -0.252 1.252 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.113 3.887 10 C -0.291 4.291 11 C 0.009 3.991 12 C -0.087 4.087 13 C -0.205 4.205 14 C -0.035 4.035 15 N -0.309 5.309 16 C -0.067 4.067 17 C -0.150 4.150 18 C -0.305 4.305 19 C -0.029 4.029 20 N -0.311 5.311 21 H 0.091 0.909 22 H 0.116 0.884 23 H 0.108 0.892 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.163 0.837 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.157 0.843 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 14.764 -5.567 0.418 15.785 hybrid contribution -1.060 -1.832 -0.301 2.137 sum 13.705 -7.399 0.117 15.575 Atomic orbital electron populations 1.70645 1.08551 1.32793 1.32938 1.28501 0.95444 1.07804 0.87817 0.81662 0.71628 0.68006 0.77806 1.20870 1.21169 1.25153 1.20682 0.94501 0.96510 1.43459 0.92147 1.18639 0.93268 0.88288 0.88499 1.21796 0.94658 0.98950 1.13725 1.19345 0.92136 0.94129 0.93445 1.19918 0.97377 0.92122 0.99322 1.23428 1.00553 0.96515 1.00040 1.20952 0.95378 0.93135 0.94074 1.61132 1.28257 1.36327 1.05218 1.22153 0.95054 0.86074 1.03451 1.21129 0.94903 1.02077 0.96855 1.21678 1.01244 0.93717 1.13885 1.22760 0.88866 0.98420 0.92888 1.66721 1.13700 1.28776 1.21898 0.90890 0.88421 0.89155 0.88546 0.88774 0.83741 0.88183 0.90321 0.91005 0.89890 0.84320 0.81789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.01 13.65 21.84 0.30 -46.71 16 2 C 0.02 1.21 5.51 85.29 0.47 1.68 16 3 Si 1.18 57.74 25.93 68.60 1.78 59.52 16 4 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 5 H -0.28 -13.87 6.54 99.48 0.65 -13.22 16 6 H -0.32 -15.01 7.11 99.48 0.71 -14.30 16 7 C -0.52 -29.98 9.51 23.49 0.22 -29.76 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 9 C 0.24 12.78 6.27 40.19 0.25 13.03 16 10 C -0.27 -12.95 9.52 23.12 0.22 -12.73 16 11 C 0.02 0.64 5.19 -19.95 -0.10 0.53 16 12 C -0.09 -2.73 5.36 -17.96 -0.10 -2.83 16 13 C -0.19 -5.29 9.52 25.01 0.24 -5.06 16 14 C 0.09 1.97 6.74 85.40 0.58 2.55 16 15 N -0.68 -13.48 6.98 -518.09 -3.61 -17.10 16 16 C 0.06 1.17 6.64 86.27 0.57 1.74 16 17 C -0.11 -2.71 5.92 29.76 0.18 -2.54 16 18 C -0.28 -10.81 9.82 22.80 0.22 -10.59 16 19 C 0.13 5.46 11.16 84.80 0.95 6.40 16 20 N -0.59 -30.05 5.01 -189.42 -0.95 -31.00 16 21 H 0.28 15.49 8.73 -92.70 -0.81 14.68 16 22 H 0.10 4.65 8.06 -2.91 -0.02 4.63 16 23 H 0.09 2.90 7.98 -2.91 -0.02 2.88 16 24 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.35 6.59 8.77 -89.69 -0.79 5.80 16 27 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 1.97 8.08 -2.39 -0.02 1.95 16 31 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.17 5.54 8.06 -2.91 -0.02 5.52 16 Total: -1.00 -63.08 269.93 1.45 -61.63 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.24 Total: 11.21 kcal Atomic # 6 Polarization: -41.25 SS G_CDS: 3.70 Total: -37.55 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -4.27 Total: -94.81 kcal Atomic # 14 Polarization: 57.74 SS G_CDS: 1.78 Total: 59.52 kcal Total: -63.08 1.45 -61.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240469873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.356 kcal (2) G-P(sol) polarization free energy of solvation -63.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds