Wall clock time and date at job start Sun Mar 29 2020 21:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86797 * 119.99884 * 2 1 4 4 H 1.48507 * 109.46509 * 274.70168 * 3 2 1 5 5 H 1.48496 * 109.47355 * 34.70298 * 3 2 1 6 6 H 1.48505 * 109.46973 * 154.70895 * 3 2 1 7 7 C 1.40215 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99334 * 163.12375 * 7 2 1 9 9 C 1.40791 * 120.00315 * 343.12565 * 7 2 1 10 10 C 1.41143 * 121.12227 * 335.85229 * 9 7 2 11 11 C 1.36426 * 119.13159 * 179.97438 * 10 9 7 12 12 N 1.32262 * 121.57575 * 359.97438 * 11 10 9 13 13 C 1.31590 * 122.53781 * 359.70500 * 12 11 10 14 14 C 1.39611 * 120.61838 * 0.58755 * 13 12 11 15 15 C 1.47104 * 120.80909 * 179.70795 * 14 13 12 16 16 C 1.32148 * 118.70396 * 104.72421 * 15 14 13 17 17 C 1.50189 * 122.96444 * 180.30150 * 16 15 14 18 18 N 1.46827 * 110.23926 * 342.91287 * 17 16 15 19 19 C 1.47210 * 110.29223 * 51.27955 * 18 17 16 20 20 C 1.50339 * 118.70082 * 284.69807 * 15 14 13 21 21 H 0.96994 * 120.00308 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.43520 * 359.95558 * 10 9 7 23 23 H 1.08005 * 119.21510 * 179.97438 * 11 10 9 24 24 H 1.07993 * 119.69557 * 180.29860 * 13 12 11 25 25 H 1.07991 * 118.52056 * 0.57816 * 16 15 14 26 26 H 1.09001 * 109.33948 * 103.14635 * 17 16 15 27 27 H 1.08993 * 109.33985 * 222.82883 * 17 16 15 28 28 H 1.00898 * 111.00004 * 287.83260 * 18 17 16 29 29 H 1.09007 * 109.61920 * 50.22588 * 19 18 17 30 30 H 1.09002 * 109.62597 * 170.60002 * 19 18 17 31 31 H 1.09008 * 109.43323 * 43.41597 * 20 15 14 32 32 H 1.08999 * 109.40335 * 283.53120 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3887 2.1037 -1.3955 5 1 1.4914 2.6219 0.7971 6 1 3.5845 1.4135 0.5982 7 6 2.0078 -1.2143 0.0005 8 1 3.0529 -1.2345 -0.2710 9 6 1.3493 -2.4072 0.3550 10 6 0.1981 -2.3902 1.1714 11 6 -0.4081 -3.5703 1.4894 12 7 0.0570 -4.7281 1.0506 13 6 1.1209 -4.8177 0.2815 14 6 1.8216 -3.6718 -0.0994 15 6 3.0152 -3.7677 -0.9538 16 6 2.9143 -3.4245 -2.2260 17 6 4.0686 -3.4913 -3.1845 18 7 5.3358 -3.5791 -2.4481 19 6 5.2744 -4.6626 -1.4535 20 6 4.3018 -4.2517 -0.3452 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1976 -1.4552 1.5398 23 1 -1.2889 -3.5588 2.1144 24 1 1.4580 -5.7871 -0.0545 25 1 1.9598 -3.0762 -2.5919 26 1 3.9592 -4.3697 -3.8206 27 1 4.0752 -2.5950 -3.8046 28 1 5.5612 -2.6985 -2.0100 29 1 4.9211 -5.5772 -1.9300 30 1 6.2656 -4.8289 -1.0316 31 1 4.0995 -5.1096 0.2962 32 1 4.7451 -3.4519 0.2481 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240469905.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:35 Heat of formation + Delta-G solvation = 29.599500 kcal Electronic energy + Delta-G solvation = -15714.354227 eV Core-core repulsion = 13252.806987 eV Total energy + Delta-G solvation = -2461.547240 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.85555 -37.61133 -34.22552 -32.61644 -30.42311 -30.18159 -28.58111 -26.01796 -23.64083 -22.65208 -21.53191 -20.90412 -17.77963 -17.56062 -15.77190 -15.47812 -14.55701 -14.44175 -14.39202 -14.16988 -13.15126 -13.02474 -12.70214 -12.46060 -12.17579 -11.91662 -11.74005 -11.50303 -11.25762 -11.14216 -10.92069 -10.47300 -10.32145 -9.85065 -9.49499 -8.42752 -8.10794 -7.97692 -7.76691 -7.50687 -6.93109 -4.65088 2.55219 2.74545 2.95851 3.00015 3.01692 3.20455 3.77320 4.56974 4.63006 5.29317 5.48727 5.53100 5.61602 5.79300 5.82678 5.87469 6.03065 6.17423 6.21171 6.29493 6.35345 6.57186 6.83646 6.88460 7.10371 7.15573 7.29760 7.35092 7.47176 7.62435 7.73039 7.86655 8.04751 8.38995 8.65118 8.70783 9.60666 9.95457 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018632 B = 0.011993 C = 0.008008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.452900 B = 2334.193206 C = 3495.688782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.078 3.922 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.440 4.440 8 H 0.081 0.919 9 C 0.143 3.857 10 C -0.212 4.212 11 C 0.079 3.921 12 N -0.580 5.580 13 C 0.122 3.878 14 C -0.235 4.235 15 C -0.021 4.021 16 C -0.209 4.209 17 C 0.093 3.907 18 N -0.685 5.685 19 C 0.056 3.944 20 C -0.118 4.118 21 H 0.284 0.716 22 H 0.124 0.876 23 H 0.116 0.884 24 H 0.118 0.882 25 H 0.105 0.895 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.341 0.659 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.413 -1.177 -2.291 6.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.470 4.470 8 H 0.099 0.901 9 C 0.135 3.865 10 C -0.234 4.234 11 C -0.069 4.069 12 N -0.295 5.295 13 C -0.036 4.036 14 C -0.241 4.241 15 C -0.022 4.022 16 C -0.229 4.229 17 C -0.037 4.037 18 N -0.313 5.313 19 C -0.073 4.073 20 C -0.157 4.157 21 H 0.095 0.905 22 H 0.142 0.858 23 H 0.134 0.866 24 H 0.135 0.865 25 H 0.123 0.877 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.157 0.843 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.045 -2.165 -2.524 6.900 hybrid contribution -0.105 2.109 0.497 2.170 sum 5.941 -0.056 -2.026 6.277 Atomic orbital electron populations 1.69744 1.07828 1.29764 1.33060 1.26040 0.94730 1.01656 0.91864 0.86272 0.80826 0.80293 0.79330 1.19281 1.19830 1.18212 1.19455 0.97886 0.90629 1.39027 0.90085 1.17781 0.90187 0.91260 0.87259 1.21892 1.00365 0.98242 1.02917 1.21681 0.98131 0.88859 0.98218 1.67267 1.16125 1.28712 1.17349 1.22062 0.91650 0.95835 0.94046 1.19686 1.01182 0.94581 1.08636 1.19334 0.92954 0.96941 0.92960 1.23174 1.00084 1.04446 0.95217 1.20812 0.86010 1.01577 0.95260 1.61129 1.31909 1.09134 1.29143 1.22084 0.98347 0.95048 0.91860 1.21169 0.94642 1.01280 0.98614 0.90451 0.85787 0.86611 0.86452 0.87668 0.90867 0.90737 0.84283 0.91148 0.90997 0.91049 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.24 10.94 55.56 0.61 -18.63 16 2 C 0.08 1.86 5.20 -17.30 -0.09 1.77 16 3 Si 0.91 17.83 29.59 -169.99 -5.03 12.80 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.44 -11.04 8.40 -37.88 -0.32 -11.36 16 8 H 0.08 1.99 7.35 -52.48 -0.39 1.60 16 9 C 0.14 3.69 5.62 -106.22 -0.60 3.09 16 10 C -0.21 -5.45 8.73 -39.13 -0.34 -5.79 16 11 C 0.08 1.94 11.08 -18.02 -0.20 1.74 16 12 N -0.58 -14.33 10.31 -13.31 -0.14 -14.46 16 13 C 0.12 2.85 10.97 -17.14 -0.19 2.66 16 14 C -0.24 -5.58 5.19 -104.18 -0.54 -6.12 16 15 C -0.02 -0.42 4.27 -103.13 -0.44 -0.86 16 16 C -0.21 -4.01 9.40 -36.48 -0.34 -4.35 16 17 C 0.09 1.44 6.74 -5.26 -0.04 1.40 16 18 N -0.69 -10.08 6.97 -115.11 -0.80 -10.89 16 19 C 0.06 0.80 6.64 -3.62 -0.02 0.77 16 20 C -0.12 -1.99 5.93 -28.02 -0.17 -2.16 16 21 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 22 H 0.12 3.22 6.22 -52.48 -0.33 2.90 16 23 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 24 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 25 H 0.11 2.24 7.98 -52.49 -0.42 1.83 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.34 4.95 8.77 -39.29 -0.34 4.61 16 29 H 0.07 0.98 8.07 -51.93 -0.42 0.57 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 270.80 15.07 4.08 4.08 Total: -1.00 -27.09 270.80 -8.55 -35.64 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -3.99 Total: 10.66 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -3.28 Total: -19.20 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.33 Total: -43.98 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.09 -8.55 -35.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240469905.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.242 kcal (2) G-P(sol) polarization free energy of solvation -27.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds