Wall clock time and date at job start Sun Mar 29 2020 21:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86797 * 119.99884 * 2 1 4 4 H 1.48507 * 109.46509 * 274.70168 * 3 2 1 5 5 H 1.48496 * 109.47355 * 34.70298 * 3 2 1 6 6 H 1.48505 * 109.46973 * 154.70895 * 3 2 1 7 7 C 1.40215 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99334 * 163.12375 * 7 2 1 9 9 C 1.40791 * 120.00315 * 343.12565 * 7 2 1 10 10 C 1.41143 * 121.12227 * 335.85229 * 9 7 2 11 11 C 1.36426 * 119.13159 * 179.97438 * 10 9 7 12 12 N 1.32262 * 121.57575 * 359.97438 * 11 10 9 13 13 C 1.31590 * 122.53781 * 359.70500 * 12 11 10 14 14 C 1.39611 * 120.61838 * 0.58755 * 13 12 11 15 15 C 1.47104 * 120.80909 * 179.70795 * 14 13 12 16 16 C 1.32148 * 118.70396 * 104.72421 * 15 14 13 17 17 C 1.50189 * 122.96444 * 180.30150 * 16 15 14 18 18 N 1.46827 * 110.23926 * 342.91287 * 17 16 15 19 19 C 1.47210 * 110.29223 * 51.27955 * 18 17 16 20 20 C 1.50339 * 118.70082 * 284.69807 * 15 14 13 21 21 H 0.96994 * 120.00308 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.43520 * 359.95558 * 10 9 7 23 23 H 1.08005 * 119.21510 * 179.97438 * 11 10 9 24 24 H 1.07993 * 119.69557 * 180.29860 * 13 12 11 25 25 H 1.07991 * 118.52056 * 0.57816 * 16 15 14 26 26 H 1.09001 * 109.33948 * 103.14635 * 17 16 15 27 27 H 1.08993 * 109.33985 * 222.82883 * 17 16 15 28 28 H 1.00898 * 111.00004 * 287.83260 * 18 17 16 29 29 H 1.09007 * 109.61920 * 50.22588 * 19 18 17 30 30 H 1.09002 * 109.62597 * 170.60002 * 19 18 17 31 31 H 1.09008 * 109.43323 * 43.41597 * 20 15 14 32 32 H 1.08999 * 109.40335 * 283.53120 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3887 2.1037 -1.3955 5 1 1.4914 2.6219 0.7971 6 1 3.5845 1.4135 0.5982 7 6 2.0078 -1.2143 0.0005 8 1 3.0529 -1.2345 -0.2710 9 6 1.3493 -2.4072 0.3550 10 6 0.1981 -2.3902 1.1714 11 6 -0.4081 -3.5703 1.4894 12 7 0.0570 -4.7281 1.0506 13 6 1.1209 -4.8177 0.2815 14 6 1.8216 -3.6718 -0.0994 15 6 3.0152 -3.7677 -0.9538 16 6 2.9143 -3.4245 -2.2260 17 6 4.0686 -3.4913 -3.1845 18 7 5.3358 -3.5791 -2.4481 19 6 5.2744 -4.6626 -1.4535 20 6 4.3018 -4.2517 -0.3452 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1976 -1.4552 1.5398 23 1 -1.2889 -3.5588 2.1144 24 1 1.4580 -5.7871 -0.0545 25 1 1.9598 -3.0762 -2.5919 26 1 3.9592 -4.3697 -3.8206 27 1 4.0752 -2.5950 -3.8046 28 1 5.5612 -2.6985 -2.0100 29 1 4.9211 -5.5772 -1.9300 30 1 6.2656 -4.8289 -1.0316 31 1 4.0995 -5.1096 0.2962 32 1 4.7451 -3.4519 0.2481 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240469905.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:35 Heat of formation + Delta-G solvation = 12.870093 kcal Electronic energy + Delta-G solvation = -15715.079669 eV Core-core repulsion = 13252.806987 eV Total energy + Delta-G solvation = -2462.272682 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.53498 -39.12369 -36.08039 -34.18611 -32.17031 -31.59574 -30.28718 -27.88651 -25.09760 -23.96402 -23.40445 -22.56219 -19.53587 -19.09816 -17.51313 -17.06755 -16.38400 -16.15716 -15.69071 -15.51250 -14.73921 -14.60851 -14.40306 -14.05577 -13.75501 -13.40807 -13.23429 -13.17669 -12.91509 -12.74148 -12.25290 -12.04759 -11.84324 -11.53565 -11.28364 -10.12234 -9.95701 -9.56676 -9.35726 -9.25871 -8.74178 -6.56597 0.73609 0.95156 1.34805 1.42513 1.47343 1.53845 2.12823 2.71403 3.43727 3.63081 3.96351 4.09844 4.20512 4.26310 4.41230 4.49627 4.62144 4.76479 4.85494 4.93206 4.98178 5.01185 5.01667 5.16658 5.24183 5.44585 5.51177 5.69346 5.91091 6.03782 6.15168 6.28099 6.45742 6.50139 6.75898 6.80701 7.69473 8.17036 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018632 B = 0.011993 C = 0.008008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.452900 B = 2334.193206 C = 3495.688782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.255 1.255 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.112 3.888 10 C -0.235 4.235 11 C 0.073 3.927 12 N -0.592 5.592 13 C 0.109 3.891 14 C -0.239 4.239 15 C -0.041 4.041 16 C -0.201 4.201 17 C 0.099 3.901 18 N -0.679 5.679 19 C 0.064 3.936 20 C -0.111 4.111 21 H 0.293 0.707 22 H 0.113 0.887 23 H 0.138 0.862 24 H 0.142 0.858 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.342 0.658 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.237 -0.948 -3.029 8.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.180 4.180 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.189 1.189 6 H -0.179 1.179 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.104 3.896 10 C -0.258 4.258 11 C -0.075 4.075 12 N -0.307 5.307 13 C -0.047 4.047 14 C -0.244 4.244 15 C -0.042 4.042 16 C -0.221 4.221 17 C -0.030 4.030 18 N -0.306 5.306 19 C -0.066 4.066 20 C -0.150 4.150 21 H 0.104 0.896 22 H 0.131 0.869 23 H 0.156 0.844 24 H 0.160 0.840 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.159 0.841 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.092 0.908 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.874 -1.960 -3.268 8.747 hybrid contribution -0.742 2.002 0.701 2.247 sum 7.131 0.042 -2.567 7.579 Atomic orbital electron populations 1.69787 1.09291 1.31228 1.33084 1.26901 0.95436 1.04794 0.90838 0.85190 0.79362 0.75676 0.79629 1.18492 1.18946 1.17897 1.19625 0.97943 0.91401 1.39924 0.90136 1.18205 0.90777 0.92682 0.87890 1.21905 1.01405 0.98285 1.04183 1.21999 0.98699 0.88542 0.98297 1.67322 1.16769 1.28655 1.17983 1.22502 0.91400 0.97001 0.93825 1.20097 1.02229 0.93880 1.08237 1.19477 0.93262 0.98504 0.92946 1.23295 1.00221 1.02959 0.95674 1.20841 0.84765 1.02874 0.94559 1.61178 1.30733 1.09476 1.29247 1.22126 0.98846 0.94862 0.90745 1.21143 0.93450 1.00981 0.99407 0.89572 0.86864 0.84448 0.84023 0.90790 0.89246 0.89601 0.84071 0.90522 0.88385 0.90840 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.51 10.94 21.87 0.24 -40.27 16 2 C 0.04 1.84 5.20 85.35 0.44 2.28 16 3 Si 0.98 36.06 29.59 68.60 2.03 38.09 16 4 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 5 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 6 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 7 C -0.46 -23.40 8.40 23.38 0.20 -23.21 16 8 H 0.08 3.99 7.35 -2.91 -0.02 3.97 16 9 C 0.11 5.94 5.62 -20.90 -0.12 5.82 16 10 C -0.24 -12.47 8.73 22.56 0.20 -12.27 16 11 C 0.07 3.64 11.08 84.20 0.93 4.57 16 12 N -0.59 -29.43 10.31 -196.02 -2.02 -31.45 16 13 C 0.11 5.13 10.97 85.06 0.93 6.06 16 14 C -0.24 -11.47 5.19 -19.58 -0.10 -11.57 16 15 C -0.04 -1.62 4.27 -18.64 -0.08 -1.70 16 16 C -0.20 -7.59 9.40 24.53 0.23 -7.36 16 17 C 0.10 2.84 6.74 85.41 0.58 3.41 16 18 N -0.68 -17.93 6.97 -518.10 -3.61 -21.54 16 19 C 0.06 1.61 6.64 86.27 0.57 2.18 16 20 C -0.11 -3.56 5.93 29.76 0.18 -3.38 16 21 H 0.29 13.18 8.29 -92.71 -0.77 12.41 16 22 H 0.11 6.12 6.22 -2.91 -0.02 6.10 16 23 H 0.14 6.01 8.06 -2.91 -0.02 5.98 16 24 H 0.14 5.81 8.06 -2.91 -0.02 5.78 16 25 H 0.07 3.22 7.98 -2.92 -0.02 3.20 16 26 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.34 9.02 8.77 -89.70 -0.79 8.23 16 29 H 0.08 1.88 8.07 -2.38 -0.02 1.86 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -58.35 270.80 0.93 -57.41 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.34 Total: 32.92 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 3.96 Total: -35.16 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -5.39 Total: -93.26 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 2.03 Total: 38.09 kcal Total: -58.35 0.93 -57.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240469905.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.281 kcal (2) G-P(sol) polarization free energy of solvation -58.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds