Wall clock time and date at job start Sun Mar 29 2020 21:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30781 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48497 * 109.47233 * 273.96206 * 3 2 1 5 5 H 1.48498 * 109.47179 * 33.96249 * 3 2 1 6 6 H 1.48499 * 109.47163 * 153.95984 * 3 2 1 7 7 C 1.40040 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00300 * 341.04999 * 7 2 1 9 9 C 1.40960 * 119.99797 * 161.05326 * 7 2 1 10 10 C 1.41355 * 120.53775 * 331.53487 * 9 7 2 11 11 C 1.36511 * 118.43543 * 179.72865 * 10 9 7 12 12 C 1.40142 * 119.45274 * 0.24978 * 11 10 9 13 13 C 1.47254 * 119.47071 * 179.97438 * 12 11 10 14 14 C 1.32030 * 118.50771 * 182.68179 * 13 12 11 15 15 C 1.50340 * 122.60776 * 180.30294 * 14 13 12 16 16 C 1.53073 * 109.69611 * 343.46376 * 15 14 13 17 17 N 1.47212 * 108.55082 * 49.28844 * 16 15 14 18 18 C 1.46992 * 110.12965 * 290.38779 * 17 16 15 19 19 N 1.33205 * 121.05542 * 359.97438 * 12 11 10 20 20 C 1.31193 * 121.70813 * 0.02562 * 19 12 11 21 21 H 0.97006 * 119.99635 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.78134 * 0.02562 * 10 9 7 23 23 H 1.08003 * 120.27133 * 180.23155 * 11 10 9 24 24 H 1.07994 * 118.69552 * 0.29024 * 14 13 12 25 25 H 1.08998 * 109.42832 * 103.53459 * 15 14 13 26 26 H 1.09002 * 109.43274 * 223.44239 * 15 14 13 27 27 H 1.09000 * 109.62421 * 169.00800 * 16 15 14 28 28 H 1.09001 * 109.62292 * 289.56767 * 16 15 14 29 29 H 1.00889 * 111.00036 * 167.10322 * 17 16 15 30 30 H 1.09000 * 109.53454 * 291.30791 * 18 17 16 31 31 H 1.08997 * 109.23699 * 171.72675 * 18 17 16 32 32 H 1.07999 * 119.79347 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.4056 2.0948 -1.3967 5 1 1.4837 2.6270 0.7821 6 1 3.5787 1.4174 0.6146 7 6 2.0079 -1.2128 0.0005 8 1 1.5118 -2.1226 0.3047 9 6 3.3603 -1.2461 -0.3958 10 6 3.8610 -0.3017 -1.3208 11 6 5.1789 -0.3700 -1.6704 12 6 5.9891 -1.3678 -1.1120 13 6 7.4106 -1.4421 -1.4892 14 6 8.1437 -2.4219 -0.9935 15 6 9.6044 -2.5816 -1.3115 16 6 9.9578 -1.7480 -2.5457 17 7 9.4274 -0.3874 -2.3595 18 6 7.9591 -0.4035 -2.4251 19 7 5.4940 -2.2501 -0.2454 20 6 4.2345 -2.2246 0.1208 21 1 -0.4850 0.8401 -0.0004 22 1 3.2174 0.4588 -1.7374 23 1 5.5935 0.3390 -2.3717 24 1 7.6756 -3.1369 -0.3332 25 1 10.1992 -2.2436 -0.4630 26 1 9.8196 -3.6316 -1.5100 27 1 11.0408 -1.7061 -2.6613 28 1 9.5095 -2.1976 -3.4317 29 1 9.8123 0.2473 -3.0428 30 1 7.6422 -0.6313 -3.4428 31 1 7.5761 0.5767 -2.1410 32 1 3.8656 -2.9553 0.8253 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240650083.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:08 Heat of formation + Delta-G solvation = 35.364844 kcal Electronic energy + Delta-G solvation = -15274.955120 eV Core-core repulsion = 12813.657884 eV Total energy + Delta-G solvation = -2461.297236 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.04971 -37.69419 -34.23603 -32.38644 -31.46955 -31.09503 -29.25306 -25.46776 -24.04467 -22.91705 -21.68838 -20.86630 -17.82765 -17.23772 -16.89387 -15.53258 -15.11139 -14.63878 -14.37393 -14.01482 -13.60684 -13.19409 -12.89193 -12.75380 -12.50327 -12.14299 -12.05529 -11.78261 -11.41449 -11.02038 -10.71088 -10.50204 -10.08890 -10.01403 -9.62941 -8.87665 -8.56462 -8.37068 -8.16153 -7.36508 -7.21116 -4.64503 1.93995 2.61432 2.89514 3.04541 3.13708 3.30664 3.79610 4.30137 4.47325 5.08656 5.18786 5.31520 5.38906 5.55997 5.67614 5.73762 5.83472 5.88280 5.99090 6.16834 6.19518 6.25787 6.45555 6.60612 6.79679 6.97560 7.01146 7.09943 7.36131 7.46658 7.57822 7.65051 7.78304 8.07755 8.34549 8.50639 9.38555 9.78578 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.049147 B = 0.006604 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.585682 B = 4239.072580 C = 4648.778840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.082 3.918 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.420 4.420 8 H 0.098 0.902 9 C 0.045 3.955 10 C -0.217 4.217 11 C -0.103 4.103 12 C -0.004 4.004 13 C -0.048 4.048 14 C -0.167 4.167 15 C -0.078 4.078 16 C 0.053 3.947 17 N -0.684 5.684 18 C 0.097 3.903 19 N -0.445 5.445 20 C 0.004 3.996 21 H 0.290 0.710 22 H 0.109 0.891 23 H 0.103 0.897 24 H 0.119 0.881 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.339 0.661 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.370 1.161 -4.316 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.140 4.140 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.168 1.168 7 C -0.448 4.448 8 H 0.116 0.884 9 C 0.040 3.960 10 C -0.242 4.242 11 C -0.123 4.123 12 C -0.136 4.136 13 C -0.049 4.049 14 C -0.187 4.187 15 C -0.116 4.116 16 C -0.077 4.077 17 N -0.314 5.314 18 C -0.032 4.032 19 N -0.152 5.152 20 C -0.163 4.163 21 H 0.101 0.899 22 H 0.126 0.874 23 H 0.121 0.879 24 H 0.137 0.863 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.156 0.844 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.669 0.622 -3.291 12.140 hybrid contribution -0.772 1.329 -1.345 2.042 sum 10.898 1.951 -4.636 12.002 Atomic orbital electron populations 1.69668 1.08239 1.30937 1.32189 1.26295 0.94791 1.02158 0.90714 0.86265 0.81255 0.79311 0.79152 1.19319 1.21306 1.16755 1.19525 0.93136 0.96414 1.35740 0.88428 1.18684 0.94093 0.92559 0.90664 1.21039 0.95811 1.04140 1.03196 1.21276 0.94400 0.97621 0.99005 1.18912 0.92856 0.98123 1.03732 1.19310 0.91805 0.95613 0.98206 1.22458 0.94067 0.99738 1.02458 1.20446 0.95069 0.98567 0.97478 1.22033 0.98954 0.89469 0.97202 1.60789 1.06528 1.08751 1.55336 1.20702 0.86804 0.98993 0.96702 1.67014 1.15382 1.22545 1.10251 1.22518 0.88250 1.02305 1.03226 0.89889 0.87364 0.87882 0.86319 0.90965 0.91540 0.91100 0.94995 0.84439 0.94303 0.89832 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.82 13.93 55.55 0.77 -19.04 16 2 C 0.08 2.05 5.41 -17.32 -0.09 1.96 16 3 Si 0.91 19.99 24.52 -169.99 -4.17 15.82 16 4 H -0.27 -5.63 6.61 56.52 0.37 -5.26 16 5 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.24 -5.62 6.93 56.52 0.39 -5.22 16 7 C -0.42 -10.84 9.58 -37.88 -0.36 -11.21 16 8 H 0.10 2.59 8.06 -52.49 -0.42 2.16 16 9 C 0.05 1.13 5.14 -106.63 -0.55 0.58 16 10 C -0.22 -5.18 7.28 -39.02 -0.28 -5.47 16 11 C -0.10 -2.28 9.25 -39.49 -0.37 -2.64 16 12 C 0.00 -0.08 6.70 -82.89 -0.56 -0.64 16 13 C -0.05 -0.93 5.86 -103.13 -0.60 -1.54 16 14 C -0.17 -3.03 9.52 -36.40 -0.35 -3.37 16 15 C -0.08 -1.10 6.32 -28.02 -0.18 -1.27 16 16 C 0.05 0.66 6.61 -3.62 -0.02 0.64 16 17 N -0.68 -9.28 6.92 -114.99 -0.80 -10.07 16 18 C 0.10 1.53 5.48 -5.18 -0.03 1.50 16 19 N -0.44 -10.62 9.06 -9.21 -0.08 -10.70 16 20 C 0.00 0.09 10.97 -16.77 -0.18 -0.09 16 21 H 0.29 6.56 8.30 -40.82 -0.34 6.22 16 22 H 0.11 2.51 4.64 -52.49 -0.24 2.27 16 23 H 0.10 1.95 6.53 -52.48 -0.34 1.60 16 24 H 0.12 2.33 7.11 -52.49 -0.37 1.95 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.40 8.07 -51.93 -0.42 -0.02 16 29 H 0.34 3.62 8.90 -39.30 -0.35 3.27 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.31 7.11 -51.93 -0.37 0.94 16 32 H 0.14 2.99 8.06 -52.49 -0.42 2.57 16 LS Contribution 262.52 15.07 3.96 3.96 Total: -1.00 -27.55 262.52 -7.70 -35.25 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -3.81 Total: 6.33 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -3.57 Total: -21.54 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.11 Total: -39.81 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.17 Total: 15.82 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.55 -7.70 -35.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240650083.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.612 kcal (2) G-P(sol) polarization free energy of solvation -27.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds