Wall clock time and date at job start Sun Mar 29 2020 21:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30781 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48497 * 109.47233 * 273.96206 * 3 2 1 5 5 H 1.48498 * 109.47179 * 33.96249 * 3 2 1 6 6 H 1.48499 * 109.47163 * 153.95984 * 3 2 1 7 7 C 1.40040 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00300 * 341.04999 * 7 2 1 9 9 C 1.40960 * 119.99797 * 161.05326 * 7 2 1 10 10 C 1.41355 * 120.53775 * 331.53487 * 9 7 2 11 11 C 1.36511 * 118.43543 * 179.72865 * 10 9 7 12 12 C 1.40142 * 119.45274 * 0.24978 * 11 10 9 13 13 C 1.47254 * 119.47071 * 179.97438 * 12 11 10 14 14 C 1.32030 * 118.50771 * 182.68179 * 13 12 11 15 15 C 1.50340 * 122.60776 * 180.30294 * 14 13 12 16 16 C 1.53073 * 109.69611 * 343.46376 * 15 14 13 17 17 N 1.47212 * 108.55082 * 49.28844 * 16 15 14 18 18 C 1.46992 * 110.12965 * 290.38779 * 17 16 15 19 19 N 1.33205 * 121.05542 * 359.97438 * 12 11 10 20 20 C 1.31193 * 121.70813 * 0.02562 * 19 12 11 21 21 H 0.97006 * 119.99635 * 0.02562 * 1 2 3 22 22 H 1.08001 * 120.78134 * 0.02562 * 10 9 7 23 23 H 1.08003 * 120.27133 * 180.23155 * 11 10 9 24 24 H 1.07994 * 118.69552 * 0.29024 * 14 13 12 25 25 H 1.08998 * 109.42832 * 103.53459 * 15 14 13 26 26 H 1.09002 * 109.43274 * 223.44239 * 15 14 13 27 27 H 1.09000 * 109.62421 * 169.00800 * 16 15 14 28 28 H 1.09001 * 109.62292 * 289.56767 * 16 15 14 29 29 H 1.00889 * 111.00036 * 167.10322 * 17 16 15 30 30 H 1.09000 * 109.53454 * 291.30791 * 18 17 16 31 31 H 1.08997 * 109.23699 * 171.72675 * 18 17 16 32 32 H 1.07999 * 119.79347 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.4056 2.0948 -1.3967 5 1 1.4837 2.6270 0.7821 6 1 3.5787 1.4174 0.6146 7 6 2.0079 -1.2128 0.0005 8 1 1.5118 -2.1226 0.3047 9 6 3.3603 -1.2461 -0.3958 10 6 3.8610 -0.3017 -1.3208 11 6 5.1789 -0.3700 -1.6704 12 6 5.9891 -1.3678 -1.1120 13 6 7.4106 -1.4421 -1.4892 14 6 8.1437 -2.4219 -0.9935 15 6 9.6044 -2.5816 -1.3115 16 6 9.9578 -1.7480 -2.5457 17 7 9.4274 -0.3874 -2.3595 18 6 7.9591 -0.4035 -2.4251 19 7 5.4940 -2.2501 -0.2454 20 6 4.2345 -2.2246 0.1208 21 1 -0.4850 0.8401 -0.0004 22 1 3.2174 0.4588 -1.7374 23 1 5.5935 0.3390 -2.3717 24 1 7.6756 -3.1369 -0.3332 25 1 10.1992 -2.2436 -0.4630 26 1 9.8196 -3.6316 -1.5100 27 1 11.0408 -1.7061 -2.6613 28 1 9.5095 -2.1976 -3.4317 29 1 9.8123 0.2473 -3.0428 30 1 7.6422 -0.6313 -3.4428 31 1 7.5761 0.5767 -2.1410 32 1 3.8656 -2.9553 0.8253 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240650083.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:08 Heat of formation + Delta-G solvation = 16.807984 kcal Electronic energy + Delta-G solvation = -15275.759806 eV Core-core repulsion = 12813.657884 eV Total energy + Delta-G solvation = -2462.101922 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72845 -39.04502 -36.04605 -33.94949 -33.10338 -32.52091 -30.82872 -27.18757 -25.40708 -24.43001 -23.21535 -22.54741 -19.60700 -18.81636 -18.15058 -17.26826 -16.81716 -15.96898 -15.66642 -15.36201 -15.28140 -14.89500 -14.52170 -14.28269 -13.93037 -13.83373 -13.49204 -13.11964 -13.00929 -12.74980 -12.16247 -11.98489 -11.87732 -11.43854 -11.36342 -10.48025 -10.36422 -10.01890 -9.42507 -9.06565 -9.04561 -6.57486 0.22865 0.75106 1.17431 1.29719 1.41290 1.64649 2.03303 2.61775 3.26898 3.52249 3.73725 3.90452 4.16152 4.25282 4.32336 4.50022 4.52168 4.56419 4.59333 4.66404 4.76222 4.91794 4.95630 5.12177 5.17983 5.28105 5.46559 5.62780 5.72677 5.82136 5.99055 6.13509 6.24435 6.47244 6.59000 6.59598 7.53060 7.99429 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.049147 B = 0.006604 C = 0.006022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.585682 B = 4239.072580 C = 4648.778840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.053 3.947 3 Si 0.963 3.037 4 H -0.249 1.249 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.456 4.456 8 H 0.070 0.930 9 C 0.030 3.970 10 C -0.222 4.222 11 C -0.108 4.108 12 C 0.002 3.998 13 C -0.078 4.078 14 C -0.154 4.154 15 C -0.079 4.079 16 C 0.053 3.947 17 N -0.689 5.689 18 C 0.103 3.897 19 N -0.461 5.461 20 C -0.014 4.014 21 H 0.301 0.699 22 H 0.116 0.884 23 H 0.141 0.859 24 H 0.096 0.904 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.033 0.967 29 H 0.358 0.642 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.354 2.447 -5.762 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.165 4.165 3 Si 0.786 3.214 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.485 4.485 8 H 0.088 0.912 9 C 0.025 3.975 10 C -0.247 4.247 11 C -0.127 4.127 12 C -0.133 4.133 13 C -0.079 4.079 14 C -0.174 4.174 15 C -0.116 4.116 16 C -0.076 4.076 17 N -0.321 5.321 18 C -0.026 4.026 19 N -0.169 5.169 20 C -0.178 4.178 21 H 0.112 0.888 22 H 0.134 0.866 23 H 0.158 0.842 24 H 0.114 0.886 25 H 0.098 0.902 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.052 0.948 29 H 0.177 0.823 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 14.633 1.900 -4.738 15.498 hybrid contribution -1.443 0.772 -0.903 1.869 sum 13.190 2.672 -5.641 14.592 Atomic orbital electron populations 1.69669 1.09108 1.32263 1.33587 1.26861 0.95348 1.04183 0.90149 0.85539 0.79231 0.76586 0.80086 1.17385 1.19452 1.18764 1.19454 0.94003 0.96322 1.38713 0.91157 1.18793 0.93916 0.93459 0.91309 1.21255 0.96843 1.03893 1.02710 1.21649 0.93625 0.98120 0.99319 1.19698 0.94802 0.96915 1.01850 1.19574 0.90220 0.97779 1.00355 1.22779 0.96420 0.98006 1.00180 1.20558 0.91824 1.00501 0.98765 1.22098 1.00844 0.88518 0.96098 1.60729 1.05066 1.09851 1.56467 1.20590 0.88338 0.97591 0.96095 1.67103 1.15074 1.23525 1.11164 1.22680 0.88610 1.02731 1.03779 0.88789 0.86644 0.84159 0.88623 0.90188 0.89425 0.87945 0.94825 0.82278 0.93240 0.89760 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.36 13.93 21.84 0.30 -42.05 16 2 C 0.05 2.71 5.41 85.29 0.46 3.17 16 3 Si 0.96 40.74 24.52 68.60 1.68 42.42 16 4 H -0.25 -9.73 6.61 99.48 0.66 -9.07 16 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.26 -11.87 6.93 99.48 0.69 -11.18 16 7 C -0.46 -24.67 9.58 23.37 0.22 -24.45 16 8 H 0.07 4.02 8.06 -2.91 -0.02 4.00 16 9 C 0.03 1.54 5.14 -21.16 -0.11 1.43 16 10 C -0.22 -10.46 7.28 22.63 0.16 -10.29 16 11 C -0.11 -4.56 9.25 22.33 0.21 -4.35 16 12 C 0.00 0.08 6.70 41.77 0.28 0.36 16 13 C -0.08 -2.84 5.86 -18.58 -0.11 -2.95 16 14 C -0.15 -5.23 9.52 24.65 0.23 -5.00 16 15 C -0.08 -1.93 6.32 29.76 0.19 -1.74 16 16 C 0.05 1.09 6.61 86.27 0.57 1.66 16 17 N -0.69 -15.73 6.92 -517.72 -3.58 -19.31 16 18 C 0.10 2.89 5.48 85.38 0.47 3.36 16 19 N -0.46 -22.14 9.06 -183.04 -1.66 -23.79 16 20 C -0.01 -0.67 10.97 85.47 0.94 0.27 16 21 H 0.30 13.74 8.30 -92.70 -0.77 12.98 16 22 H 0.12 5.21 4.64 -2.91 -0.01 5.19 16 23 H 0.14 4.82 6.53 -2.91 -0.02 4.80 16 24 H 0.10 3.68 7.11 -2.91 -0.02 3.66 16 25 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.03 0.69 8.07 -2.39 -0.02 0.67 16 29 H 0.36 5.99 8.90 -89.70 -0.80 5.19 16 30 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 2.34 7.11 -2.39 -0.02 2.32 16 32 H 0.14 6.56 8.06 -2.91 -0.02 6.53 16 Total: -1.00 -60.14 262.52 0.54 -59.60 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.27 Total: 21.67 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 3.52 Total: -38.54 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -4.93 Total: -85.16 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.68 Total: 42.42 kcal Total: -60.14 0.54 -59.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240650083.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.411 kcal (2) G-P(sol) polarization free energy of solvation -60.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds