Wall clock time and date at job start Sun Mar 29 2020 21:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86799 * 119.99999 * 2 1 4 4 H 1.48496 * 109.47291 * 239.99805 * 3 2 1 5 5 H 1.48505 * 109.47203 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47084 * 119.99959 * 3 2 1 7 7 C 1.40098 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99859 * 192.70594 * 7 2 1 9 9 C 1.40764 * 120.00211 * 12.71352 * 7 2 1 10 10 C 1.41148 * 120.72775 * 26.61054 * 9 7 2 11 11 C 1.36847 * 118.40847 * 179.73079 * 10 9 7 12 12 C 1.38941 * 119.84441 * 359.97438 * 11 10 9 13 13 N 1.31666 * 121.53893 * 359.97438 * 12 11 10 14 14 C 1.32786 * 121.69947 * 0.02562 * 13 12 11 15 15 C 1.47076 * 120.01728 * 180.02562 * 14 13 12 16 16 C 1.32134 * 118.51925 * 242.56525 * 15 14 13 17 17 C 1.50339 * 122.59635 * 180.02562 * 16 15 14 18 18 C 1.53072 * 109.75242 * 343.93513 * 17 16 15 19 19 N 1.47205 * 108.55067 * 49.09693 * 18 17 16 20 20 C 1.46836 * 110.28794 * 290.51384 * 19 18 17 21 21 H 0.96996 * 120.00390 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.79573 * 359.74459 * 10 9 7 23 23 H 1.07996 * 120.07616 * 180.02562 * 11 10 9 24 24 H 1.07997 * 119.22965 * 180.02562 * 12 11 10 25 25 H 1.08004 * 118.70278 * 0.32671 * 16 15 14 26 26 H 1.09000 * 109.57713 * 223.74595 * 17 16 15 27 27 H 1.09001 * 109.19748 * 103.89526 * 17 16 15 28 28 H 1.09000 * 109.62852 * 289.38036 * 18 17 16 29 29 H 1.08997 * 109.62488 * 168.81015 * 18 17 16 30 30 H 1.00904 * 111.00111 * 53.95639 * 19 18 17 31 31 H 1.08999 * 109.34272 * 291.04513 * 20 19 18 32 32 H 1.08997 * 109.21842 * 171.43522 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0954 1.6964 -1.2124 5 1 1.2766 2.7465 0.0006 6 1 3.0954 1.6964 1.2126 7 6 2.0081 -1.2133 0.0005 8 1 3.0683 -1.2246 0.2063 9 6 1.3302 -2.4175 -0.2672 10 6 0.1585 -2.4260 -1.0542 11 6 -0.4593 -3.6243 -1.2892 12 6 0.0720 -4.7923 -0.7565 13 7 1.1659 -4.7798 -0.0238 14 6 1.8144 -3.6521 0.2426 15 6 3.0334 -3.6811 1.0650 16 6 3.0321 -3.0356 2.2179 17 6 4.2270 -3.0041 3.1298 18 6 5.2118 -4.1058 2.7304 19 7 5.4356 -4.0296 1.2775 20 6 4.2252 -4.4385 0.5537 21 1 -0.4850 0.8400 0.0004 22 1 -0.2408 -1.5088 -1.4612 23 1 -1.3572 -3.6620 -1.8881 24 1 -0.4233 -5.7326 -0.9486 25 1 2.1357 -2.5140 2.5194 26 1 3.9050 -3.1612 4.1592 27 1 4.7156 -2.0333 3.0469 28 1 4.7947 -5.0799 2.9859 29 1 6.1563 -3.9600 3.2544 30 1 5.7244 -3.1022 1.0042 31 1 4.0626 -5.5068 0.6968 32 1 4.3556 -4.2323 -0.5086 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240650599.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:37 Heat of formation + Delta-G solvation = 31.417583 kcal Electronic energy + Delta-G solvation = -15757.455913 eV Core-core repulsion = 13295.987511 eV Total energy + Delta-G solvation = -2461.468402 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.86760 -37.53167 -34.14212 -32.18885 -30.84182 -30.47237 -28.60597 -25.62478 -23.48650 -22.95360 -21.44348 -20.82375 -17.72354 -17.35878 -15.80195 -15.61822 -14.91111 -14.44880 -14.21118 -13.95473 -13.28914 -13.10907 -12.51949 -12.38905 -11.88664 -11.69819 -11.53343 -11.40231 -11.27642 -11.08081 -10.92696 -10.71394 -10.44998 -9.79145 -9.45867 -8.48682 -8.31126 -7.97397 -7.82712 -7.43116 -6.87982 -4.52657 2.45775 2.78413 2.96457 2.98980 3.13374 3.21483 3.79353 4.55194 4.69992 5.31298 5.42003 5.50257 5.63742 5.88314 5.90849 5.98571 6.15160 6.24870 6.26520 6.30709 6.41790 6.62334 6.73833 6.91380 7.05106 7.12715 7.28143 7.36589 7.63826 7.71779 7.79597 7.90682 7.93297 8.38925 8.61409 8.69883 9.59425 10.00147 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018740 B = 0.012291 C = 0.008100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.776154 B = 2277.501087 C = 3456.015812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.436 4.436 8 H 0.082 0.918 9 C 0.083 3.917 10 C -0.134 4.134 11 C -0.152 4.152 12 C -0.038 4.038 13 N -0.456 5.456 14 C 0.015 3.985 15 C -0.054 4.054 16 C -0.161 4.161 17 C -0.119 4.119 18 C 0.054 3.946 19 N -0.684 5.684 20 C 0.099 3.901 21 H 0.284 0.716 22 H 0.128 0.872 23 H 0.097 0.903 24 H 0.119 0.881 25 H 0.108 0.892 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.339 0.661 31 H 0.081 0.919 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.218 -0.463 2.266 5.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.465 4.465 8 H 0.101 0.899 9 C 0.078 3.922 10 C -0.160 4.160 11 C -0.172 4.172 12 C -0.198 4.198 13 N -0.164 5.164 14 C -0.125 4.125 15 C -0.056 4.056 16 C -0.180 4.180 17 C -0.157 4.157 18 C -0.075 4.075 19 N -0.311 5.311 20 C -0.030 4.030 21 H 0.095 0.905 22 H 0.145 0.855 23 H 0.115 0.885 24 H 0.136 0.864 25 H 0.126 0.874 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.156 0.844 31 H 0.099 0.901 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.638 -1.722 2.546 6.422 hybrid contribution -1.028 2.503 -0.225 2.715 sum 4.611 0.781 2.321 5.221 Atomic orbital electron populations 1.69735 1.07680 1.29703 1.34513 1.26009 0.94816 1.01568 0.92180 0.86287 0.80109 0.79799 0.80207 1.18639 1.20208 1.18755 1.19434 0.96629 0.90122 1.40360 0.89944 1.18391 0.91930 0.92604 0.89257 1.21448 0.98038 0.96912 0.99613 1.21424 0.99784 0.94598 1.01410 1.21645 0.96913 0.96435 1.04801 1.67146 1.07205 1.30213 1.11798 1.19716 0.98544 0.89325 1.04944 1.19906 0.94093 0.97662 0.93977 1.22389 0.98543 1.01970 0.95121 1.21087 0.95952 0.99560 0.99137 1.22081 0.97832 0.98642 0.88975 1.61177 1.32597 1.32076 1.05209 1.20794 0.85435 0.99116 0.97649 0.90499 0.85459 0.88518 0.86375 0.87425 0.91339 0.91500 0.91015 0.91083 0.84441 0.90080 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.59 10.83 55.56 0.60 -18.99 16 2 C 0.07 1.74 5.25 -17.31 -0.09 1.65 16 3 Si 0.91 17.95 29.58 -169.99 -5.03 12.92 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 7 C -0.44 -10.96 7.78 -37.93 -0.30 -11.26 16 8 H 0.08 2.02 7.05 -52.48 -0.37 1.65 16 9 C 0.08 2.15 5.57 -106.37 -0.59 1.56 16 10 C -0.13 -3.43 8.73 -38.98 -0.34 -3.77 16 11 C -0.15 -3.55 10.03 -39.82 -0.40 -3.95 16 12 C -0.04 -0.89 11.16 -17.36 -0.19 -1.08 16 13 N -0.46 -11.35 10.30 -9.29 -0.10 -11.45 16 14 C 0.01 0.36 6.09 -82.40 -0.50 -0.14 16 15 C -0.05 -1.16 4.73 -103.21 -0.49 -1.65 16 16 C -0.16 -3.24 8.39 -36.41 -0.31 -3.55 16 17 C -0.12 -1.86 6.22 -28.02 -0.17 -2.03 16 18 C 0.05 0.79 6.64 -3.62 -0.02 0.76 16 19 N -0.68 -10.87 6.97 -115.12 -0.80 -11.67 16 20 C 0.10 1.85 6.44 -5.26 -0.03 1.82 16 21 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 22 H 0.13 3.30 6.22 -52.49 -0.33 2.97 16 23 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 24 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 25 H 0.11 2.44 7.91 -52.48 -0.42 2.03 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.34 5.16 8.77 -39.29 -0.34 4.82 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 269.18 15.07 4.06 4.06 Total: -1.00 -27.05 269.18 -8.68 -35.73 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -3.97 Total: 11.05 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -3.44 Total: -21.64 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.30 Total: -42.11 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.05 -8.68 -35.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240650599.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.145 kcal (2) G-P(sol) polarization free energy of solvation -27.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds