Wall clock time and date at job start Sun Mar 29 2020 21:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86799 * 119.99999 * 2 1 4 4 H 1.48496 * 109.47291 * 239.99805 * 3 2 1 5 5 H 1.48505 * 109.47203 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47084 * 119.99959 * 3 2 1 7 7 C 1.40098 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99859 * 192.70594 * 7 2 1 9 9 C 1.40764 * 120.00211 * 12.71352 * 7 2 1 10 10 C 1.41148 * 120.72775 * 26.61054 * 9 7 2 11 11 C 1.36847 * 118.40847 * 179.73079 * 10 9 7 12 12 C 1.38941 * 119.84441 * 359.97438 * 11 10 9 13 13 N 1.31666 * 121.53893 * 359.97438 * 12 11 10 14 14 C 1.32786 * 121.69947 * 0.02562 * 13 12 11 15 15 C 1.47076 * 120.01728 * 180.02562 * 14 13 12 16 16 C 1.32134 * 118.51925 * 242.56525 * 15 14 13 17 17 C 1.50339 * 122.59635 * 180.02562 * 16 15 14 18 18 C 1.53072 * 109.75242 * 343.93513 * 17 16 15 19 19 N 1.47205 * 108.55067 * 49.09693 * 18 17 16 20 20 C 1.46836 * 110.28794 * 290.51384 * 19 18 17 21 21 H 0.96996 * 120.00390 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.79573 * 359.74459 * 10 9 7 23 23 H 1.07996 * 120.07616 * 180.02562 * 11 10 9 24 24 H 1.07997 * 119.22965 * 180.02562 * 12 11 10 25 25 H 1.08004 * 118.70278 * 0.32671 * 16 15 14 26 26 H 1.09000 * 109.57713 * 223.74595 * 17 16 15 27 27 H 1.09001 * 109.19748 * 103.89526 * 17 16 15 28 28 H 1.09000 * 109.62852 * 289.38036 * 18 17 16 29 29 H 1.08997 * 109.62488 * 168.81015 * 18 17 16 30 30 H 1.00904 * 111.00111 * 53.95639 * 19 18 17 31 31 H 1.08999 * 109.34272 * 291.04513 * 20 19 18 32 32 H 1.08997 * 109.21842 * 171.43522 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.0954 1.6964 -1.2124 5 1 1.2766 2.7465 0.0006 6 1 3.0954 1.6964 1.2126 7 6 2.0081 -1.2133 0.0005 8 1 3.0683 -1.2246 0.2063 9 6 1.3302 -2.4175 -0.2672 10 6 0.1585 -2.4260 -1.0542 11 6 -0.4593 -3.6243 -1.2892 12 6 0.0720 -4.7923 -0.7565 13 7 1.1659 -4.7798 -0.0238 14 6 1.8144 -3.6521 0.2426 15 6 3.0334 -3.6811 1.0650 16 6 3.0321 -3.0356 2.2179 17 6 4.2270 -3.0041 3.1298 18 6 5.2118 -4.1058 2.7304 19 7 5.4356 -4.0296 1.2775 20 6 4.2252 -4.4385 0.5537 21 1 -0.4850 0.8400 0.0004 22 1 -0.2408 -1.5088 -1.4612 23 1 -1.3572 -3.6620 -1.8881 24 1 -0.4233 -5.7326 -0.9486 25 1 2.1357 -2.5140 2.5194 26 1 3.9050 -3.1612 4.1592 27 1 4.7156 -2.0333 3.0469 28 1 4.7947 -5.0799 2.9859 29 1 6.1563 -3.9600 3.2544 30 1 5.7244 -3.1022 1.0042 31 1 4.0626 -5.5068 0.6968 32 1 4.3556 -4.2323 -0.5086 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240650599.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:36 Heat of formation + Delta-G solvation = 14.413877 kcal Electronic energy + Delta-G solvation = -15758.193249 eV Core-core repulsion = 13295.987511 eV Total energy + Delta-G solvation = -2462.205738 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57832 -39.07766 -35.99419 -33.80150 -32.52351 -32.07189 -30.30013 -27.48127 -24.95146 -24.43840 -23.30803 -22.45424 -19.34843 -19.15513 -17.53220 -17.25836 -16.45757 -16.20076 -15.63833 -15.54211 -14.87665 -14.60549 -14.18479 -13.99471 -13.49949 -13.36783 -13.23771 -13.13475 -12.80980 -12.72833 -12.35286 -12.23853 -11.90872 -11.49584 -11.24063 -10.31603 -10.05305 -9.71551 -9.38484 -9.18465 -8.69041 -6.43439 0.64196 0.98666 1.35344 1.46347 1.48670 1.50993 2.14396 2.71230 3.40762 3.63376 3.87244 4.15931 4.25552 4.37194 4.39187 4.49068 4.60686 4.75721 4.81709 4.84999 4.96315 5.01987 5.04655 5.16764 5.22540 5.33864 5.63978 5.82805 5.85333 6.02086 6.03117 6.25201 6.45579 6.51736 6.73296 6.80961 7.69967 8.21555 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018740 B = 0.012291 C = 0.008100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.776154 B = 2277.501087 C = 3456.015812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.256 1.256 7 C -0.455 4.455 8 H 0.082 0.918 9 C 0.053 3.947 10 C -0.161 4.161 11 C -0.152 4.152 12 C -0.047 4.047 13 N -0.473 5.473 14 C 0.001 3.999 15 C -0.076 4.076 16 C -0.153 4.153 17 C -0.113 4.113 18 C 0.058 3.942 19 N -0.676 5.676 20 C 0.113 3.887 21 H 0.291 0.709 22 H 0.117 0.883 23 H 0.126 0.874 24 H 0.149 0.851 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.345 0.655 31 H 0.077 0.923 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.675 -0.041 3.037 7.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.484 4.484 8 H 0.100 0.900 9 C 0.048 3.952 10 C -0.187 4.187 11 C -0.172 4.172 12 C -0.206 4.206 13 N -0.181 5.181 14 C -0.139 4.139 15 C -0.079 4.079 16 C -0.173 4.173 17 C -0.151 4.151 18 C -0.072 4.072 19 N -0.303 5.303 20 C -0.017 4.017 21 H 0.102 0.898 22 H 0.135 0.865 23 H 0.144 0.856 24 H 0.167 0.833 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.162 0.838 31 H 0.095 0.905 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.092 -1.318 3.318 7.940 hybrid contribution -1.569 2.321 -0.440 2.836 sum 5.522 1.003 2.879 6.308 Atomic orbital electron populations 1.69789 1.09109 1.31012 1.34723 1.26856 0.95530 1.04658 0.91153 0.85227 0.78820 0.75330 0.80363 1.18219 1.19265 1.18035 1.19578 0.96663 0.90788 1.41407 0.90013 1.18781 0.92691 0.93725 0.89994 1.21517 0.98953 0.97430 1.00765 1.21714 1.00470 0.93854 1.01197 1.22210 0.96622 0.97742 1.04067 1.67233 1.07921 1.30388 1.12509 1.20270 0.99635 0.89011 1.04941 1.20100 0.94078 0.99371 0.94322 1.22525 0.99147 1.00155 0.95475 1.21141 0.94249 1.00849 0.98897 1.22191 0.99051 0.97925 0.88005 1.61190 1.30559 1.32487 1.06075 1.20587 0.85395 0.98411 0.97349 0.89778 0.86538 0.85564 0.83335 0.90857 0.89405 0.90157 0.91304 0.87594 0.83787 0.90451 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.33 10.83 21.85 0.24 -41.10 16 2 C 0.03 1.63 5.25 85.30 0.45 2.08 16 3 Si 0.98 36.39 29.58 68.60 2.03 38.42 16 4 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 5 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 6 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 7 C -0.46 -23.39 7.78 23.34 0.18 -23.21 16 8 H 0.08 4.07 7.05 -2.91 -0.02 4.04 16 9 C 0.05 2.82 5.57 -20.99 -0.12 2.70 16 10 C -0.16 -8.45 8.73 22.66 0.20 -8.25 16 11 C -0.15 -7.15 10.03 22.11 0.22 -6.93 16 12 C -0.05 -2.20 11.16 84.89 0.95 -1.25 16 13 N -0.47 -23.77 10.30 -183.30 -1.89 -25.66 16 14 C 0.00 0.07 6.09 42.27 0.26 0.33 16 15 C -0.08 -3.29 4.73 -18.69 -0.09 -3.38 16 16 C -0.15 -6.17 8.39 24.59 0.21 -5.96 16 17 C -0.11 -3.26 6.22 29.76 0.19 -3.08 16 18 C 0.06 1.48 6.64 86.27 0.57 2.06 16 19 N -0.68 -20.04 6.97 -518.12 -3.61 -23.66 16 20 C 0.11 4.14 6.44 85.41 0.55 4.69 16 21 H 0.29 13.27 8.29 -92.71 -0.77 12.50 16 22 H 0.12 6.25 6.22 -2.91 -0.02 6.24 16 23 H 0.13 5.02 8.06 -2.91 -0.02 4.99 16 24 H 0.15 5.85 8.06 -2.91 -0.02 5.83 16 25 H 0.07 3.43 7.91 -2.91 -0.02 3.40 16 26 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.07 1.84 8.07 -2.39 -0.02 1.83 16 29 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.34 9.71 8.77 -89.69 -0.79 8.92 16 31 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -59.15 269.18 0.67 -58.48 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.34 Total: 33.71 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 3.56 Total: -40.20 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -5.26 Total: -90.41 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -59.15 0.67 -58.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240650599.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.892 kcal (2) G-P(sol) polarization free energy of solvation -59.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds