Wall clock time and date at job start Sun Mar 29 2020 21:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86804 * 119.99433 * 2 1 4 4 H 1.48505 * 109.46943 * 269.99569 * 3 2 1 5 5 H 1.48498 * 109.47638 * 30.00189 * 3 2 1 6 6 H 1.48504 * 109.47006 * 150.00620 * 3 2 1 7 7 C 1.40010 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.41365 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.40735 * 119.75732 * 180.29817 * 9 7 2 11 11 C 1.38280 * 119.21959 * 180.22749 * 10 9 7 12 12 C 1.38677 * 118.70956 * 359.48240 * 11 10 9 13 13 C 1.40066 * 119.45128 * 0.27470 * 12 11 10 14 14 C 1.47706 * 119.62833 * 180.02562 * 13 12 11 15 15 C 1.31577 * 118.47836 * 185.51529 * 14 13 12 16 16 C 1.50327 * 122.67038 * 180.33894 * 15 14 13 17 17 C 1.53083 * 109.69688 * 343.46256 * 16 15 14 18 18 N 1.47214 * 108.53478 * 49.22425 * 17 16 15 19 19 C 1.47003 * 110.10196 * 290.51147 * 18 17 16 20 20 N 1.32397 * 120.74368 * 359.97438 * 13 12 11 21 21 H 0.96999 * 120.00412 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.39035 * 359.97438 * 10 9 7 23 23 H 1.08008 * 120.64424 * 179.75044 * 11 10 9 24 24 H 1.08000 * 120.27573 * 180.29850 * 12 11 10 25 25 H 1.08009 * 118.66383 * 0.30860 * 15 14 13 26 26 H 1.08998 * 109.43896 * 103.52947 * 16 15 14 27 27 H 1.08998 * 109.43542 * 223.44527 * 16 15 14 28 28 H 1.09006 * 109.62676 * 168.93721 * 17 16 15 29 29 H 1.09001 * 109.63098 * 289.50972 * 17 16 15 30 30 H 1.00904 * 110.99847 * 54.10636 * 18 17 16 31 31 H 1.09000 * 109.54513 * 291.25565 * 19 18 17 32 32 H 1.09004 * 109.22566 * 171.67840 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4388 2.6528 0.7000 6 1 3.5390 1.4404 0.6999 7 6 2.0076 -1.2125 -0.0005 8 1 3.0876 -1.2124 -0.0010 9 6 1.3009 -2.4368 -0.0005 10 6 2.0098 -3.6526 0.0053 11 6 1.3073 -4.8436 0.0004 12 6 -0.0788 -4.7995 0.0009 13 6 -0.7283 -3.5585 0.0005 14 6 -2.2045 -3.5070 0.0016 15 6 -2.7914 -2.3347 -0.1101 16 6 -4.2859 -2.1723 -0.1121 17 6 -4.9513 -3.5241 -0.3830 18 7 -4.3569 -4.5269 0.5160 19 6 -2.9658 -4.7956 0.1238 20 7 -0.0340 -2.4312 0.0000 21 1 -0.4851 0.8400 0.0004 22 1 3.0898 -3.6553 0.0093 23 1 1.8280 -5.7899 0.0007 24 1 -0.6527 -5.7144 0.0021 25 1 -2.1743 -1.4532 -0.2035 26 1 -4.6112 -1.7959 0.8577 27 1 -4.5728 -1.4653 -0.8905 28 1 -6.0220 -3.4499 -0.1919 29 1 -4.7809 -3.8150 -1.4196 30 1 -4.4139 -4.2287 1.4783 31 1 -2.9510 -5.3159 -0.8338 32 1 -2.4944 -5.4230 0.8803 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240651490.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:46 Heat of formation + Delta-G solvation = 42.431096 kcal Electronic energy + Delta-G solvation = -15548.497553 eV Core-core repulsion = 13087.506732 eV Total energy + Delta-G solvation = -2460.990821 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.84756 -37.50939 -33.72727 -32.15413 -30.99766 -30.30471 -28.64647 -25.67927 -23.66806 -23.09277 -21.25136 -20.69394 -17.73851 -17.41274 -15.78082 -15.26852 -14.62770 -14.37084 -14.35546 -14.03758 -13.17147 -13.06239 -12.68520 -12.31877 -12.04204 -11.89596 -11.34132 -11.23193 -11.06925 -11.04304 -10.71826 -10.53847 -10.33582 -9.93800 -9.46999 -8.81996 -8.18323 -8.02941 -7.59889 -7.16101 -6.43713 -4.54035 2.18756 2.87835 3.06562 3.09537 3.17581 3.53975 3.92225 4.56966 4.77897 5.22408 5.31560 5.53134 5.58417 5.81657 5.88366 5.95419 6.09987 6.11504 6.17146 6.19511 6.40198 6.52627 6.74719 6.88925 7.05311 7.14760 7.33128 7.38738 7.56085 7.60095 7.68590 7.82299 8.07026 8.21727 8.65572 8.91108 10.06373 10.28631 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026942 B = 0.008730 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.033620 B = 3206.614528 C = 4192.646630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.720 5.720 2 C 0.071 3.929 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.433 4.433 8 H 0.083 0.917 9 C 0.257 3.743 10 C -0.277 4.277 11 C -0.060 4.060 12 C -0.306 4.306 13 C 0.178 3.822 14 C -0.120 4.120 15 C -0.133 4.133 16 C -0.127 4.127 17 C 0.052 3.948 18 N -0.682 5.682 19 C 0.099 3.901 20 N -0.473 5.473 21 H 0.271 0.729 22 H 0.097 0.903 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.149 0.851 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.339 0.661 31 H 0.078 0.922 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.085 -2.232 0.144 6.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.342 5.342 2 C -0.154 4.154 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.465 4.465 8 H 0.101 0.899 9 C 0.131 3.869 10 C -0.300 4.300 11 C -0.084 4.084 12 C -0.329 4.329 13 C 0.033 3.967 14 C -0.122 4.122 15 C -0.153 4.153 16 C -0.166 4.166 17 C -0.078 4.078 18 N -0.309 5.309 19 C -0.031 4.031 20 N -0.186 5.186 21 H 0.082 0.918 22 H 0.116 0.884 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.166 0.834 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.156 0.844 31 H 0.097 0.903 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.926 -1.838 -0.196 7.169 hybrid contribution 1.490 0.752 0.272 1.691 sum -5.436 -1.086 0.075 5.544 Atomic orbital electron populations 1.70075 1.07192 1.27556 1.29370 1.26033 0.94893 1.00993 0.93447 0.86335 0.80475 0.80845 0.79192 1.19444 1.20155 1.18589 1.19581 0.94209 0.89351 1.43348 0.89902 1.18536 0.88029 0.91979 0.88321 1.21772 0.98681 0.93619 1.15955 1.20790 0.94005 0.96572 0.97026 1.21274 0.94482 0.96929 1.20189 1.19929 0.92365 0.89806 0.94594 1.20404 0.92445 0.95406 1.03985 1.23069 0.94637 0.99934 0.97663 1.21219 0.94601 0.98839 1.01900 1.22121 0.98067 0.89783 0.97794 1.61217 1.17451 1.45375 1.06898 1.20790 0.86118 0.94479 1.01701 1.68778 1.07243 1.25316 1.17231 0.91782 0.88430 0.88645 0.88540 0.83354 0.91223 0.90917 0.90964 0.90969 0.84438 0.90343 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.77 10.92 55.55 0.61 -18.16 16 2 C 0.07 1.80 5.50 -17.35 -0.10 1.70 16 3 Si 0.91 18.58 29.56 -169.99 -5.02 13.56 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.43 -11.65 9.14 -37.73 -0.34 -11.99 16 8 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 9 C 0.26 7.12 6.55 -85.01 -0.56 6.57 16 10 C -0.28 -6.96 9.83 -38.62 -0.38 -7.34 16 11 C -0.06 -1.37 10.14 -39.40 -0.40 -1.77 16 12 C -0.31 -7.00 9.34 -38.73 -0.36 -7.36 16 13 C 0.18 4.37 6.69 -83.07 -0.56 3.81 16 14 C -0.12 -2.49 5.86 -102.87 -0.60 -3.09 16 15 C -0.13 -2.68 9.50 -36.34 -0.35 -3.03 16 16 C -0.13 -1.94 6.22 -28.02 -0.17 -2.11 16 17 C 0.05 0.71 6.64 -3.61 -0.02 0.69 16 18 N -0.68 -10.04 6.98 -114.98 -0.80 -10.84 16 19 C 0.10 1.67 5.43 -5.18 -0.03 1.64 16 20 N -0.47 -12.98 6.60 -7.78 -0.05 -13.03 16 21 H 0.27 6.41 8.29 -40.82 -0.34 6.07 16 22 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 23 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 24 H 0.10 1.93 6.64 -52.49 -0.35 1.58 16 25 H 0.15 3.52 6.58 -52.48 -0.35 3.18 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 30 H 0.34 4.72 8.78 -39.29 -0.34 4.37 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.08 1.34 7.26 -51.93 -0.38 0.97 16 LS Contribution 268.39 15.07 4.04 4.04 Total: -1.00 -28.60 268.39 -9.01 -37.61 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -3.92 Total: 9.09 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -3.87 Total: -22.28 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: -0.25 Total: -42.03 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.60 -9.01 -37.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240651490.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.046 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds