Wall clock time and date at job start Sun Mar 29 2020 21:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30751 * 1 3 3 Si 1.86804 * 119.99433 * 2 1 4 4 H 1.48505 * 109.46943 * 269.99569 * 3 2 1 5 5 H 1.48498 * 109.47638 * 30.00189 * 3 2 1 6 6 H 1.48504 * 109.47006 * 150.00620 * 3 2 1 7 7 C 1.40010 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.41365 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.40735 * 119.75732 * 180.29817 * 9 7 2 11 11 C 1.38280 * 119.21959 * 180.22749 * 10 9 7 12 12 C 1.38677 * 118.70956 * 359.48240 * 11 10 9 13 13 C 1.40066 * 119.45128 * 0.27470 * 12 11 10 14 14 C 1.47706 * 119.62833 * 180.02562 * 13 12 11 15 15 C 1.31577 * 118.47836 * 185.51529 * 14 13 12 16 16 C 1.50327 * 122.67038 * 180.33894 * 15 14 13 17 17 C 1.53083 * 109.69688 * 343.46256 * 16 15 14 18 18 N 1.47214 * 108.53478 * 49.22425 * 17 16 15 19 19 C 1.47003 * 110.10196 * 290.51147 * 18 17 16 20 20 N 1.32397 * 120.74368 * 359.97438 * 13 12 11 21 21 H 0.96999 * 120.00412 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.39035 * 359.97438 * 10 9 7 23 23 H 1.08008 * 120.64424 * 179.75044 * 11 10 9 24 24 H 1.08000 * 120.27573 * 180.29850 * 12 11 10 25 25 H 1.08009 * 118.66383 * 0.30860 * 15 14 13 26 26 H 1.08998 * 109.43896 * 103.52947 * 16 15 14 27 27 H 1.08998 * 109.43542 * 223.44527 * 16 15 14 28 28 H 1.09006 * 109.62676 * 168.93721 * 17 16 15 29 29 H 1.09001 * 109.63098 * 289.50972 * 17 16 15 30 30 H 1.00904 * 110.99847 * 54.10636 * 18 17 16 31 31 H 1.09000 * 109.54513 * 291.25565 * 19 18 17 32 32 H 1.09004 * 109.22566 * 171.67840 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4388 2.6528 0.7000 6 1 3.5390 1.4404 0.6999 7 6 2.0076 -1.2125 -0.0005 8 1 3.0876 -1.2124 -0.0010 9 6 1.3009 -2.4368 -0.0005 10 6 2.0098 -3.6526 0.0053 11 6 1.3073 -4.8436 0.0004 12 6 -0.0788 -4.7995 0.0009 13 6 -0.7283 -3.5585 0.0005 14 6 -2.2045 -3.5070 0.0016 15 6 -2.7914 -2.3347 -0.1101 16 6 -4.2859 -2.1723 -0.1121 17 6 -4.9513 -3.5241 -0.3830 18 7 -4.3569 -4.5269 0.5160 19 6 -2.9658 -4.7956 0.1238 20 7 -0.0340 -2.4312 0.0000 21 1 -0.4851 0.8400 0.0004 22 1 3.0898 -3.6553 0.0093 23 1 1.8280 -5.7899 0.0007 24 1 -0.6527 -5.7144 0.0021 25 1 -2.1743 -1.4532 -0.2035 26 1 -4.6112 -1.7959 0.8577 27 1 -4.5728 -1.4653 -0.8905 28 1 -6.0220 -3.4499 -0.1919 29 1 -4.7809 -3.8150 -1.4196 30 1 -4.4139 -4.2287 1.4783 31 1 -2.9510 -5.3159 -0.8338 32 1 -2.4944 -5.4230 0.8803 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240651490.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:46 Heat of formation + Delta-G solvation = 24.247789 kcal Electronic energy + Delta-G solvation = -15549.286040 eV Core-core repulsion = 13087.506732 eV Total energy + Delta-G solvation = -2461.779308 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.48119 -39.07836 -35.59265 -33.76153 -32.51057 -32.00744 -30.35496 -27.54452 -25.07810 -24.57503 -22.98006 -22.38127 -19.39433 -19.13858 -17.41071 -16.82269 -16.21742 -16.13151 -15.96184 -15.41989 -14.79678 -14.52143 -14.33875 -13.94715 -13.54075 -13.46334 -12.89707 -12.84878 -12.71948 -12.62481 -12.29856 -12.18547 -11.82203 -11.60633 -11.28918 -10.54483 -9.91620 -9.51706 -9.42088 -8.93466 -8.31281 -6.53286 0.42711 1.09156 1.37266 1.46268 1.51124 1.81426 2.19965 2.88521 3.37844 3.78176 3.95765 4.05382 4.18653 4.34212 4.40922 4.49142 4.62714 4.75637 4.77830 4.87339 4.90961 4.98293 5.02505 5.15807 5.22622 5.48908 5.61632 5.79106 5.86402 5.93708 6.06936 6.26400 6.33846 6.45641 6.73287 6.95236 8.15554 8.42498 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026942 B = 0.008730 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.033620 B = 3206.614528 C = 4192.646630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.025 3.975 3 Si 0.986 3.014 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.471 4.471 8 H 0.086 0.914 9 C 0.220 3.780 10 C -0.302 4.302 11 C -0.059 4.059 12 C -0.304 4.304 13 C 0.151 3.849 14 C -0.135 4.135 15 C -0.136 4.136 16 C -0.119 4.119 17 C 0.057 3.943 18 N -0.674 5.674 19 C 0.110 3.890 20 N -0.503 5.503 21 H 0.277 0.723 22 H 0.107 0.893 23 H 0.134 0.866 24 H 0.129 0.871 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.345 0.655 31 H 0.084 0.916 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 -2.790 0.243 7.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.503 4.503 8 H 0.104 0.896 9 C 0.094 3.906 10 C -0.325 4.325 11 C -0.083 4.083 12 C -0.326 4.326 13 C 0.007 3.993 14 C -0.138 4.138 15 C -0.156 4.156 16 C -0.158 4.158 17 C -0.073 4.073 18 N -0.301 5.301 19 C -0.020 4.020 20 N -0.217 5.217 21 H 0.087 0.913 22 H 0.125 0.875 23 H 0.152 0.848 24 H 0.147 0.853 25 H 0.125 0.875 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.123 0.877 29 H 0.088 0.912 30 H 0.163 0.837 31 H 0.102 0.898 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.181 -2.423 -0.093 8.533 hybrid contribution 1.830 0.849 0.236 2.031 sum -6.351 -1.574 0.143 6.545 Atomic orbital electron populations 1.70191 1.08682 1.28775 1.29750 1.26946 0.95800 1.04351 0.92545 0.85151 0.78998 0.75808 0.79376 1.18820 1.19195 1.18069 1.19924 0.94623 0.90457 1.45271 0.89606 1.19059 0.88880 0.93422 0.89277 1.21972 0.99381 0.93915 1.17197 1.21233 0.94317 0.97405 0.95348 1.21689 0.94903 0.97627 1.18427 1.20712 0.94527 0.89978 0.94078 1.20718 0.90831 0.97495 1.04723 1.23164 0.97343 0.98335 0.96786 1.21241 0.90922 1.00527 1.03077 1.22200 0.99532 0.88073 0.97478 1.61247 1.15600 1.45741 1.07534 1.20708 0.86851 0.92304 1.02122 1.68777 1.07408 1.27087 1.18429 0.91259 0.87486 0.84799 0.85288 0.87478 0.89849 0.89747 0.87664 0.91229 0.83728 0.89820 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.72 10.92 21.83 0.24 -40.48 16 2 C 0.03 1.30 5.50 85.28 0.47 1.77 16 3 Si 0.99 38.87 29.56 68.60 2.03 40.90 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 7 C -0.47 -26.37 9.14 23.47 0.21 -26.15 16 8 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 9 C 0.22 12.65 6.55 40.27 0.26 12.92 16 10 C -0.30 -15.45 9.83 22.89 0.23 -15.22 16 11 C -0.06 -2.65 10.14 22.38 0.23 -2.43 16 12 C -0.30 -13.64 9.34 22.82 0.21 -13.42 16 13 C 0.15 7.52 6.69 42.01 0.28 7.80 16 14 C -0.14 -5.57 5.86 -18.11 -0.11 -5.68 16 15 C -0.14 -5.51 9.50 24.98 0.24 -5.27 16 16 C -0.12 -3.41 6.22 29.76 0.19 -3.22 16 17 C 0.06 1.37 6.64 86.27 0.57 1.94 16 18 N -0.67 -17.81 6.98 -517.67 -3.61 -21.43 16 19 C 0.11 3.50 5.43 85.37 0.46 3.97 16 20 N -0.50 -28.71 6.60 -178.52 -1.18 -29.88 16 21 H 0.28 13.56 8.29 -92.71 -0.77 12.79 16 22 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 23 H 0.13 4.87 8.06 -2.91 -0.02 4.85 16 24 H 0.13 4.84 6.64 -2.91 -0.02 4.82 16 25 H 0.11 5.31 6.58 -2.91 -0.02 5.29 16 26 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.07 1.75 8.07 -2.39 -0.02 1.73 16 30 H 0.35 8.58 8.78 -89.69 -0.79 7.79 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.08 2.61 7.26 -2.39 -0.02 2.60 16 Total: -1.00 -64.49 268.39 1.06 -63.43 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.34 Total: 30.48 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 3.25 Total: -43.01 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -4.55 Total: -91.79 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -64.49 1.06 -63.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240651490.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.676 kcal (2) G-P(sol) polarization free energy of solvation -64.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds