Wall clock time and date at job start Sun Mar 29 2020 21:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46976 * 2 1 4 4 C 1.52993 * 109.47555 * 119.99786 * 2 1 3 5 5 C 1.50700 * 109.46927 * 240.00312 * 2 1 3 6 6 C 1.32543 * 120.00361 * 359.97438 * 5 2 1 7 7 C 1.47838 * 120.00395 * 180.02562 * 6 5 2 8 8 C 1.39914 * 120.01904 * 359.97438 * 7 6 5 9 9 C 1.38349 * 120.35678 * 179.97438 * 8 7 6 10 10 C 1.37736 * 120.40461 * 0.02562 * 9 8 7 11 11 C 1.40771 * 120.03030 * 0.02562 * 10 9 8 12 12 C 1.41432 * 120.17734 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00088 * 150.19609 * 12 11 10 14 14 C 1.39933 * 119.99879 * 330.19704 * 12 11 10 15 15 N 1.30826 * 119.99944 * 161.72500 * 14 12 11 16 16 Si 1.86804 * 119.99849 * 341.72300 * 14 12 11 17 17 H 1.48499 * 109.47075 * 95.41636 * 16 14 12 18 18 H 1.48507 * 109.46925 * 215.41602 * 16 14 12 19 19 H 1.48501 * 109.47185 * 335.41194 * 16 14 12 20 20 C 1.38935 * 120.02152 * 179.72490 * 7 6 5 21 21 H 1.08995 * 109.47238 * 60.00060 * 1 2 3 22 22 H 1.09003 * 109.47129 * 299.99869 * 1 2 3 23 23 H 1.08996 * 109.46495 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47208 * 59.99633 * 3 2 1 25 25 H 1.08995 * 109.47630 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46944 * 300.00010 * 3 2 1 27 27 H 1.09002 * 109.46963 * 59.99874 * 4 2 1 28 28 H 1.08993 * 109.47578 * 180.02562 * 4 2 1 29 29 H 1.09003 * 109.47184 * 300.00311 * 4 2 1 30 30 H 1.08004 * 119.99549 * 179.97438 * 5 2 1 31 31 H 1.08004 * 120.00089 * 0.02562 * 6 5 2 32 32 H 1.08003 * 119.82201 * 359.97438 * 8 7 6 33 33 H 1.07997 * 119.79611 * 180.02562 * 9 8 7 34 34 H 1.07991 * 119.98370 * 180.02562 * 10 9 8 35 35 H 0.96997 * 120.00087 * 179.97438 * 15 14 12 36 36 H 1.08003 * 120.19859 * 0.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2492 5 6 2.0323 -0.7103 -1.2305 6 6 1.1711 -1.2145 -2.1028 7 6 1.6638 -1.9118 -3.3096 8 6 3.0393 -2.0394 -3.5318 9 6 3.5081 -2.6911 -4.6585 10 6 2.6266 -3.2212 -5.5746 11 6 1.2393 -3.1014 -5.3682 12 6 0.3314 -3.6450 -6.3066 13 1 -0.6376 -3.9936 -5.9811 14 6 0.6887 -3.7313 -7.6568 15 7 0.0350 -4.5344 -8.4564 16 14 2.0989 -2.6996 -8.3175 17 1 3.3466 -3.5048 -8.3110 18 1 1.7920 -2.2734 -9.7066 19 1 2.2790 -1.5005 -7.4602 20 6 0.7613 -2.4454 -4.2213 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.6766 1.9564 0.8899 25 1 3.1300 1.4427 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6768 -1.7488 1.2492 28 1 3.1301 -0.7208 1.2494 29 1 1.6768 -0.2073 2.1392 30 1 3.0942 -0.8086 -1.4016 31 1 0.1092 -1.1158 -1.9319 32 1 3.7389 -1.6270 -2.8198 33 1 4.5717 -2.7848 -4.8208 34 1 3.0000 -3.7289 -6.4515 35 1 0.2824 -4.5939 -9.3924 36 1 -0.3013 -2.3523 -4.0518 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241564279.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:21 Heat of formation + Delta-G solvation = 8.655617 kcal Electronic energy + Delta-G solvation = -15255.527402 eV Core-core repulsion = 12896.612310 eV Total energy + Delta-G solvation = -2358.915092 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.31575 -37.23920 -33.81560 -32.17462 -30.23215 -28.33618 -27.22798 -27.18660 -25.02268 -22.70650 -20.75850 -20.02720 -17.86412 -16.94215 -15.96281 -15.26017 -14.54211 -14.37219 -14.10009 -13.62613 -13.45706 -12.71071 -12.59019 -12.34529 -12.09443 -12.00801 -11.64219 -11.57799 -11.50788 -11.02225 -10.98663 -10.80795 -10.59609 -10.47030 -10.15978 -9.76170 -9.53949 -9.31594 -9.00916 -7.66806 -7.13990 -6.92347 -4.47046 1.92310 2.64235 3.11409 3.22587 3.29542 3.43828 4.00665 4.58520 4.84306 4.91668 5.08864 5.45300 5.47914 5.58163 5.63511 5.64447 5.80675 5.87773 5.90664 5.93264 6.08051 6.09844 6.19709 6.30080 6.36774 6.37146 6.53933 6.73399 6.79517 7.08909 7.12883 7.22030 7.46833 7.64381 7.81639 7.89280 8.12672 8.37376 8.66719 8.82682 10.10441 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.045788 B = 0.005585 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.363733 B = 5012.132374 C = 5246.661765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.037 4.037 3 C -0.136 4.136 4 C -0.136 4.136 5 C -0.169 4.169 6 C -0.096 4.096 7 C -0.037 4.037 8 C -0.229 4.229 9 C -0.082 4.082 10 C -0.234 4.234 11 C 0.090 3.910 12 C -0.451 4.451 13 H 0.090 0.910 14 C 0.085 3.915 15 N -0.812 5.812 16 Si 0.911 3.089 17 H -0.271 1.271 18 H -0.291 1.291 19 H -0.245 1.245 20 C -0.189 4.189 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.284 0.716 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.313 7.832 11.760 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.037 4.037 3 C -0.193 4.193 4 C -0.193 4.193 5 C -0.187 4.187 6 C -0.114 4.114 7 C -0.037 4.037 8 C -0.248 4.248 9 C -0.101 4.101 10 C -0.254 4.254 11 C 0.087 3.913 12 C -0.480 4.480 13 H 0.108 0.892 14 C -0.133 4.133 15 N -0.436 5.436 16 Si 0.737 3.263 17 H -0.197 1.197 18 H -0.219 1.219 19 H -0.168 1.168 20 C -0.208 4.208 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.202 7.696 11.513 14.214 hybrid contribution 0.603 0.241 -0.562 0.859 sum 3.805 7.938 10.951 14.050 Atomic orbital electron populations 1.21967 0.94801 1.01967 1.01461 1.19546 0.95267 0.94908 0.93947 1.21817 1.00927 0.95181 1.01401 1.21815 1.00927 1.00334 0.96240 1.23096 0.99440 1.00764 0.95386 1.21989 0.98945 0.96835 0.93604 1.18716 0.93352 0.97999 0.93644 1.20511 0.93904 1.10087 1.00289 1.20537 0.97445 0.97454 0.94633 1.21092 0.93840 1.09090 1.01328 1.17683 0.91807 0.89180 0.92634 1.19468 1.02722 1.34404 0.91421 0.89221 1.26122 0.96621 0.93406 0.97189 1.69699 1.38304 1.28757 1.06840 0.86325 0.80359 0.82334 0.77247 1.19721 1.21886 1.16808 1.21179 0.97328 1.04604 0.97697 0.92275 0.93002 0.92271 0.92949 0.92750 0.92566 0.92553 0.92749 0.92959 0.87153 0.86963 0.88611 0.88854 0.88302 0.90538 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 7.13 37.16 0.26 -1.41 16 2 C -0.04 -0.45 0.99 -155.66 -0.15 -0.60 16 3 C -0.14 -1.48 8.46 37.16 0.31 -1.17 16 4 C -0.14 -1.47 8.46 37.15 0.31 -1.16 16 5 C -0.17 -2.56 8.18 -36.22 -0.30 -2.86 16 6 C -0.10 -1.68 8.88 -37.57 -0.33 -2.02 16 7 C -0.04 -0.79 5.86 -105.08 -0.62 -1.41 16 8 C -0.23 -4.85 9.41 -38.91 -0.37 -5.22 16 9 C -0.08 -1.83 10.01 -39.72 -0.40 -2.23 16 10 C -0.23 -5.78 7.17 -38.81 -0.28 -6.06 16 11 C 0.09 2.33 5.10 -106.87 -0.55 1.78 16 12 C -0.45 -12.42 9.57 -37.73 -0.36 -12.78 16 13 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 14 C 0.08 2.26 5.40 -17.35 -0.09 2.17 16 15 N -0.81 -21.95 13.93 55.55 0.77 -21.17 16 16 Si 0.91 21.20 24.52 -169.99 -4.17 17.04 16 17 H -0.27 -6.12 6.71 56.52 0.38 -5.74 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.24 -5.87 6.86 56.52 0.39 -5.48 16 20 C -0.19 -4.48 9.52 -38.47 -0.37 -4.85 16 21 H 0.06 0.70 7.50 -51.93 -0.39 0.31 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.70 7.50 -51.93 -0.39 0.31 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.11 1.71 6.02 -52.48 -0.32 1.39 16 31 H 0.11 1.82 5.73 -52.48 -0.30 1.52 16 32 H 0.10 1.79 6.14 -52.48 -0.32 1.47 16 33 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.10 2.43 4.72 -52.49 -0.25 2.18 16 35 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 36 H 0.10 2.28 8.06 -52.48 -0.42 1.85 16 LS Contribution 290.32 15.07 4.38 4.38 Total: -1.00 -27.49 290.32 -7.30 -34.78 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.36 Total: 2.79 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: -2.91 Total: -37.81 kcal Atomic # 7 Polarization: -21.95 SS G_CDS: 0.77 Total: -21.17 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.17 Total: 17.04 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.49 -7.30 -34.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241564279.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.440 kcal (2) G-P(sol) polarization free energy of solvation -27.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds