Wall clock time and date at job start Sun Mar 29 2020 21:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46976 * 2 1 4 4 C 1.52993 * 109.47555 * 119.99786 * 2 1 3 5 5 C 1.50700 * 109.46927 * 240.00312 * 2 1 3 6 6 C 1.32543 * 120.00361 * 359.97438 * 5 2 1 7 7 C 1.47838 * 120.00395 * 180.02562 * 6 5 2 8 8 C 1.39914 * 120.01904 * 359.97438 * 7 6 5 9 9 C 1.38349 * 120.35678 * 179.97438 * 8 7 6 10 10 C 1.37736 * 120.40461 * 0.02562 * 9 8 7 11 11 C 1.40771 * 120.03030 * 0.02562 * 10 9 8 12 12 C 1.41432 * 120.17734 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00088 * 150.19609 * 12 11 10 14 14 C 1.39933 * 119.99879 * 330.19704 * 12 11 10 15 15 N 1.30826 * 119.99944 * 161.72500 * 14 12 11 16 16 Si 1.86804 * 119.99849 * 341.72300 * 14 12 11 17 17 H 1.48499 * 109.47075 * 95.41636 * 16 14 12 18 18 H 1.48507 * 109.46925 * 215.41602 * 16 14 12 19 19 H 1.48501 * 109.47185 * 335.41194 * 16 14 12 20 20 C 1.38935 * 120.02152 * 179.72490 * 7 6 5 21 21 H 1.08995 * 109.47238 * 60.00060 * 1 2 3 22 22 H 1.09003 * 109.47129 * 299.99869 * 1 2 3 23 23 H 1.08996 * 109.46495 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47208 * 59.99633 * 3 2 1 25 25 H 1.08995 * 109.47630 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46944 * 300.00010 * 3 2 1 27 27 H 1.09002 * 109.46963 * 59.99874 * 4 2 1 28 28 H 1.08993 * 109.47578 * 180.02562 * 4 2 1 29 29 H 1.09003 * 109.47184 * 300.00311 * 4 2 1 30 30 H 1.08004 * 119.99549 * 179.97438 * 5 2 1 31 31 H 1.08004 * 120.00089 * 0.02562 * 6 5 2 32 32 H 1.08003 * 119.82201 * 359.97438 * 8 7 6 33 33 H 1.07997 * 119.79611 * 180.02562 * 9 8 7 34 34 H 1.07991 * 119.98370 * 180.02562 * 10 9 8 35 35 H 0.96997 * 120.00087 * 179.97438 * 15 14 12 36 36 H 1.08003 * 120.19859 * 0.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2492 5 6 2.0323 -0.7103 -1.2305 6 6 1.1711 -1.2145 -2.1028 7 6 1.6638 -1.9118 -3.3096 8 6 3.0393 -2.0394 -3.5318 9 6 3.5081 -2.6911 -4.6585 10 6 2.6266 -3.2212 -5.5746 11 6 1.2393 -3.1014 -5.3682 12 6 0.3314 -3.6450 -6.3066 13 1 -0.6376 -3.9936 -5.9811 14 6 0.6887 -3.7313 -7.6568 15 7 0.0350 -4.5344 -8.4564 16 14 2.0989 -2.6996 -8.3175 17 1 3.3466 -3.5048 -8.3110 18 1 1.7920 -2.2734 -9.7066 19 1 2.2790 -1.5005 -7.4602 20 6 0.7613 -2.4454 -4.2213 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.6766 1.9564 0.8899 25 1 3.1300 1.4427 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6768 -1.7488 1.2492 28 1 3.1301 -0.7208 1.2494 29 1 1.6768 -0.2073 2.1392 30 1 3.0942 -0.8086 -1.4016 31 1 0.1092 -1.1158 -1.9319 32 1 3.7389 -1.6270 -2.8198 33 1 4.5717 -2.7848 -4.8208 34 1 3.0000 -3.7289 -6.4515 35 1 0.2824 -4.5939 -9.3924 36 1 -0.3013 -2.3523 -4.0518 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241564279.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:21 Heat of formation + Delta-G solvation = -4.702682 kcal Electronic energy + Delta-G solvation = -15256.106662 eV Core-core repulsion = 12896.612310 eV Total energy + Delta-G solvation = -2359.494351 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.87189 -38.54495 -35.67882 -33.76648 -32.07558 -29.87008 -28.19782 -28.01771 -26.91696 -24.21028 -22.55578 -21.54423 -19.28794 -18.58585 -17.76439 -16.59706 -16.31711 -15.82427 -15.14065 -15.00773 -14.87682 -14.51739 -14.12703 -13.90156 -13.44561 -13.14660 -12.99467 -12.89197 -12.71403 -12.52853 -12.49741 -12.21499 -11.85670 -11.73931 -11.57248 -11.50010 -11.25502 -11.05536 -10.64649 -9.54771 -8.91097 -8.77398 -6.52461 0.33117 0.79932 1.23900 1.39239 1.45670 1.80748 2.12304 2.68224 3.55696 3.76576 3.94736 4.17797 4.22192 4.33357 4.43211 4.54175 4.62377 4.72607 4.82080 4.84112 4.95097 4.97842 5.00739 5.06508 5.07515 5.20524 5.27601 5.33990 5.44193 5.50100 5.51215 5.71997 5.78040 5.87358 5.90825 6.16008 6.26528 6.40702 6.73469 6.82949 8.18245 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.045788 B = 0.005585 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.363733 B = 5012.132374 C = 5246.661765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C -0.135 4.135 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.132 4.132 7 C -0.031 4.031 8 C -0.221 4.221 9 C -0.084 4.084 10 C -0.253 4.253 11 C 0.071 3.929 12 C -0.491 4.491 13 H 0.054 0.946 14 C 0.049 3.951 15 N -0.852 5.852 16 Si 0.967 3.033 17 H -0.257 1.257 18 H -0.276 1.276 19 H -0.257 1.257 20 C -0.213 4.213 21 H 0.050 0.950 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.293 0.707 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.756 9.870 14.104 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.041 4.041 3 C -0.192 4.192 4 C -0.192 4.192 5 C -0.148 4.148 6 C -0.150 4.150 7 C -0.031 4.031 8 C -0.239 4.239 9 C -0.102 4.102 10 C -0.272 4.272 11 C 0.069 3.931 12 C -0.520 4.520 13 H 0.072 0.928 14 C -0.165 4.165 15 N -0.479 5.479 16 Si 0.790 3.210 17 H -0.182 1.182 18 H -0.202 1.202 19 H -0.181 1.181 20 C -0.233 4.233 21 H 0.070 0.930 22 H 0.091 0.909 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.643 9.728 13.864 17.852 hybrid contribution -0.096 -0.284 -0.964 1.010 sum 5.547 9.444 12.900 16.923 Atomic orbital electron populations 1.21979 0.94486 1.01729 1.02151 1.19675 0.95660 0.95709 0.93011 1.21808 1.01365 0.93910 1.02089 1.21805 1.01366 0.99900 0.96092 1.23471 0.99238 0.97065 0.94984 1.21887 0.99962 0.99661 0.93516 1.19118 0.93419 0.96477 0.94096 1.21005 0.94291 1.08386 1.00245 1.20951 0.98982 0.96327 0.93975 1.21199 0.93560 1.10123 1.02314 1.17839 0.92505 0.89718 0.93078 1.19461 1.02192 1.37396 0.92993 0.92799 1.26789 0.98854 0.94034 0.96864 1.69725 1.40252 1.30324 1.07594 0.85475 0.78193 0.80365 0.76963 1.18217 1.20241 1.18054 1.21314 0.97955 1.05782 0.98230 0.93046 0.90938 0.93044 0.90943 0.92078 0.93354 0.93338 0.92075 0.90955 0.86721 0.86266 0.85139 0.85301 0.88593 0.89621 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 7.13 71.98 0.51 -2.47 16 2 C -0.04 -0.84 0.99 -52.93 -0.05 -0.89 16 3 C -0.13 -2.37 8.46 71.98 0.61 -1.76 16 4 C -0.13 -2.37 8.46 71.98 0.61 -1.76 16 5 C -0.13 -3.50 8.18 24.54 0.20 -3.30 16 6 C -0.13 -4.41 8.88 23.67 0.21 -4.20 16 7 C -0.03 -1.29 5.86 -20.16 -0.12 -1.41 16 8 C -0.22 -8.68 9.41 22.70 0.21 -8.47 16 9 C -0.08 -3.53 10.01 22.18 0.22 -3.31 16 10 C -0.25 -12.40 7.17 22.77 0.16 -12.24 16 11 C 0.07 3.80 5.10 -21.32 -0.11 3.69 16 12 C -0.49 -28.73 9.57 23.47 0.22 -28.51 16 13 H 0.05 3.39 8.06 -2.91 -0.02 3.36 16 14 C 0.05 2.70 5.40 85.25 0.46 3.16 16 15 N -0.85 -48.15 13.93 21.82 0.30 -47.85 16 16 Si 0.97 44.28 24.52 68.60 1.68 45.97 16 17 H -0.26 -11.06 6.71 99.48 0.67 -10.39 16 18 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.26 -12.11 6.86 99.48 0.68 -11.42 16 20 C -0.21 -10.41 9.52 22.99 0.22 -10.20 16 21 H 0.05 1.12 7.50 -2.39 -0.02 1.10 16 22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.05 1.12 7.50 -2.39 -0.02 1.10 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 26 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.12 3.01 6.02 -2.91 -0.02 2.99 16 31 H 0.12 3.78 5.73 -2.91 -0.02 3.76 16 32 H 0.13 4.21 6.14 -2.91 -0.02 4.20 16 33 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 34 H 0.10 4.69 4.72 -2.92 -0.01 4.67 16 35 H 0.29 14.84 8.30 -92.71 -0.77 14.07 16 36 H 0.10 4.67 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -61.47 290.32 6.33 -55.14 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.98 Total: 18.39 kcal Atomic # 6 Polarization: -75.02 SS G_CDS: 3.36 Total: -71.65 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.30 Total: -47.85 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.68 Total: 45.97 kcal Total: -61.47 6.33 -55.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241564279.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.439 kcal (2) G-P(sol) polarization free energy of solvation -61.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds