Wall clock time and date at job start Sun Mar 29 2020 21:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86801 * 119.99858 * 2 1 4 4 H 1.48494 * 109.47411 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46919 * 300.00166 * 3 2 1 6 6 H 1.48502 * 109.47251 * 59.99910 * 3 2 1 7 7 C 1.40194 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00451 * 179.97438 * 7 2 1 9 9 C 1.40673 * 119.99933 * 359.97438 * 7 2 1 10 10 N 1.34105 * 120.58392 * 8.50772 * 9 7 2 11 11 C 1.31499 * 119.86606 * 180.22611 * 10 9 7 12 12 C 1.39087 * 121.16829 * 359.49604 * 11 10 9 13 13 N 1.31839 * 121.23988 * 0.27606 * 12 11 10 14 14 C 1.33182 * 120.02163 * 359.97438 * 13 12 11 15 15 C 1.47037 * 120.56534 * 179.97438 * 14 13 12 16 16 C 1.31812 * 118.12281 * 242.79402 * 15 14 13 17 17 C 1.50097 * 123.75996 * 180.17893 * 16 15 14 18 18 C 1.53008 * 110.18644 * 343.28066 * 17 16 15 19 19 C 1.53366 * 108.51626 * 49.59507 * 18 17 16 20 20 C 1.50096 * 118.12081 * 63.05963 * 15 14 13 21 21 H 0.96996 * 120.00666 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.41229 * 179.77380 * 11 10 9 23 23 H 1.07997 * 119.38350 * 180.25734 * 12 11 10 24 24 H 1.08004 * 118.11919 * 0.41937 * 16 15 14 25 25 H 1.08994 * 109.48792 * 222.96342 * 17 16 15 26 26 H 1.09000 * 109.17552 * 103.39904 * 17 16 15 27 27 H 1.09001 * 109.63210 * 289.89079 * 18 17 16 28 28 H 1.08997 * 109.62851 * 169.29683 * 18 17 16 29 29 H 1.08997 * 109.62985 * 172.18715 * 19 18 17 30 30 H 1.09000 * 109.63146 * 51.59395 * 19 18 17 31 31 H 1.08996 * 109.36068 * 283.00577 * 20 15 14 32 32 H 1.09003 * 109.35964 * 42.60144 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0078 -1.2141 0.0005 8 1 3.0877 -1.2141 0.0001 9 6 1.3045 -2.4324 0.0016 10 7 -0.0255 -2.4526 -0.1686 11 6 -0.6694 -3.5991 -0.1607 12 6 0.0059 -4.8028 0.0116 13 7 1.3133 -4.8355 0.1782 14 6 2.0130 -3.7022 0.1833 15 6 3.4714 -3.7247 0.3687 16 6 3.9717 -3.1292 1.4329 17 6 5.4389 -3.0720 1.7443 18 6 6.1945 -4.1173 0.9213 19 6 5.7675 -3.9839 -0.5457 20 6 4.3058 -4.4193 -0.6678 21 1 -0.4851 0.8400 0.0004 22 1 -1.7410 -3.6066 -0.2949 23 1 -0.5511 -5.7280 0.0092 24 1 3.2863 -2.6586 2.1222 25 1 5.5932 -3.2670 2.8055 26 1 5.8178 -2.0789 1.5026 27 1 5.9503 -5.1157 1.2843 28 1 7.2674 -3.9455 1.0073 29 1 6.3932 -4.6229 -1.1688 30 1 5.8681 -2.9461 -0.8634 31 1 4.2368 -5.4976 -0.5240 32 1 3.9345 -4.1647 -1.6605 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241714643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:27 Heat of formation + Delta-G solvation = 30.378630 kcal Electronic energy + Delta-G solvation = -15712.089230 eV Core-core repulsion = 13250.575775 eV Total energy + Delta-G solvation = -2461.513455 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.86808 -37.40763 -34.10348 -32.40976 -31.27748 -30.15026 -28.60080 -26.02999 -23.29234 -22.30110 -21.77234 -20.77165 -17.63833 -17.11308 -15.98260 -15.73130 -14.86956 -14.26979 -14.02439 -13.40573 -13.25236 -13.07299 -12.56841 -12.18966 -11.82861 -11.78664 -11.51004 -11.47569 -11.41513 -10.78297 -10.41478 -10.33356 -10.01208 -9.91285 -9.65683 -9.52865 -9.10619 -8.13119 -7.57110 -7.28283 -6.54608 -4.69096 2.37035 2.82494 2.98398 3.03779 3.10895 3.34142 3.78982 4.60480 5.21797 5.25874 5.30207 5.66050 5.69161 5.93322 5.95882 6.01853 6.04367 6.09680 6.23604 6.30108 6.33613 6.42880 6.47811 6.53083 6.66815 6.74553 6.91008 7.05584 7.11380 7.47984 7.69341 7.90096 8.05178 8.37341 8.66539 9.28509 9.85505 10.05050 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018979 B = 0.012053 C = 0.007964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.949909 B = 2322.465030 C = 3515.108448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.063 3.937 3 Si 0.911 3.089 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.394 4.394 8 H 0.097 0.903 9 C 0.222 3.778 10 N -0.465 5.465 11 C 0.086 3.914 12 C -0.134 4.134 13 N -0.416 5.416 14 C -0.029 4.029 15 C -0.013 4.013 16 C -0.167 4.167 17 C -0.079 4.079 18 C -0.118 4.118 19 C -0.118 4.118 20 C -0.073 4.073 21 H 0.278 0.722 22 H 0.125 0.875 23 H 0.122 0.878 24 H 0.103 0.897 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.566 -1.090 0.594 7.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.326 5.326 2 C -0.164 4.164 3 Si 0.734 3.266 4 H -0.178 1.178 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.424 4.424 8 H 0.115 0.885 9 C 0.096 3.904 10 N -0.182 5.182 11 C -0.082 4.082 12 C -0.292 4.292 13 N -0.128 5.128 14 C -0.180 4.180 15 C -0.014 4.014 16 C -0.187 4.187 17 C -0.116 4.116 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.111 4.111 21 H 0.090 0.910 22 H 0.143 0.857 23 H 0.140 0.860 24 H 0.121 0.879 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.266 -0.955 0.573 7.351 hybrid contribution -0.081 0.687 -0.003 0.692 sum 7.185 -0.269 0.571 7.213 Atomic orbital electron populations 1.70058 1.07533 1.28600 1.26361 1.26252 0.94980 1.01659 0.93494 0.86190 0.81118 0.80431 0.78846 1.17830 1.19529 1.19527 1.19702 0.95185 0.88774 1.38783 0.88512 1.20454 0.88694 0.91916 0.89375 1.69534 1.07693 1.24341 1.16601 1.23344 0.99719 0.90432 0.94752 1.22336 0.91433 0.97541 1.17918 1.67831 1.07679 1.29948 1.07322 1.21624 0.93088 0.89941 1.13362 1.18930 0.90517 0.97354 0.94620 1.22270 0.95320 1.02743 0.98388 1.20325 0.93323 0.98828 0.99143 1.21581 0.98692 0.99533 0.95756 1.21598 0.96205 1.01419 0.96307 1.20306 0.93102 0.99583 0.98079 0.91043 0.85743 0.86005 0.87857 0.91912 0.91576 0.92025 0.92507 0.92411 0.91805 0.91296 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.19 11.54 55.56 0.64 -17.55 16 2 C 0.06 1.56 5.50 -17.31 -0.10 1.46 16 3 Si 0.91 17.84 29.56 -169.99 -5.03 12.81 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.39 -10.16 8.40 -37.93 -0.32 -10.48 16 8 H 0.10 2.36 6.38 -52.49 -0.33 2.02 16 9 C 0.22 6.05 6.67 -82.61 -0.55 5.49 16 10 N -0.47 -12.89 8.13 -9.53 -0.08 -12.97 16 11 C 0.09 2.13 11.17 -17.38 -0.19 1.94 16 12 C -0.13 -3.21 11.17 -17.23 -0.19 -3.41 16 13 N -0.42 -10.59 10.46 -7.96 -0.08 -10.67 16 14 C -0.03 -0.74 6.16 -80.37 -0.50 -1.23 16 15 C -0.01 -0.28 4.79 -103.24 -0.49 -0.77 16 16 C -0.17 -3.32 8.03 -36.49 -0.29 -3.61 16 17 C -0.08 -1.22 6.11 -28.17 -0.17 -1.39 16 18 C -0.12 -1.64 6.00 -26.54 -0.16 -1.80 16 19 C -0.12 -1.75 6.00 -26.54 -0.16 -1.91 16 20 C -0.07 -1.34 5.79 -28.17 -0.16 -1.51 16 21 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 22 H 0.13 2.65 8.06 -52.49 -0.42 2.23 16 23 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 24 H 0.10 2.23 7.92 -52.48 -0.42 1.82 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 270.57 15.07 4.08 4.08 Total: -1.00 -29.28 270.57 -7.86 -37.14 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -4.11 Total: 4.37 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -3.29 Total: -17.21 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.48 Total: -41.18 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.28 -7.86 -37.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241714643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.519 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds