Wall clock time and date at job start Sun Mar 29 2020 21:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86801 * 119.99858 * 2 1 4 4 H 1.48494 * 109.47411 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46919 * 300.00166 * 3 2 1 6 6 H 1.48502 * 109.47251 * 59.99910 * 3 2 1 7 7 C 1.40194 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00451 * 179.97438 * 7 2 1 9 9 C 1.40673 * 119.99933 * 359.97438 * 7 2 1 10 10 N 1.34105 * 120.58392 * 8.50772 * 9 7 2 11 11 C 1.31499 * 119.86606 * 180.22611 * 10 9 7 12 12 C 1.39087 * 121.16829 * 359.49604 * 11 10 9 13 13 N 1.31839 * 121.23988 * 0.27606 * 12 11 10 14 14 C 1.33182 * 120.02163 * 359.97438 * 13 12 11 15 15 C 1.47037 * 120.56534 * 179.97438 * 14 13 12 16 16 C 1.31812 * 118.12281 * 242.79402 * 15 14 13 17 17 C 1.50097 * 123.75996 * 180.17893 * 16 15 14 18 18 C 1.53008 * 110.18644 * 343.28066 * 17 16 15 19 19 C 1.53366 * 108.51626 * 49.59507 * 18 17 16 20 20 C 1.50096 * 118.12081 * 63.05963 * 15 14 13 21 21 H 0.96996 * 120.00666 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.41229 * 179.77380 * 11 10 9 23 23 H 1.07997 * 119.38350 * 180.25734 * 12 11 10 24 24 H 1.08004 * 118.11919 * 0.41937 * 16 15 14 25 25 H 1.08994 * 109.48792 * 222.96342 * 17 16 15 26 26 H 1.09000 * 109.17552 * 103.39904 * 17 16 15 27 27 H 1.09001 * 109.63210 * 289.89079 * 18 17 16 28 28 H 1.08997 * 109.62851 * 169.29683 * 18 17 16 29 29 H 1.08997 * 109.62985 * 172.18715 * 19 18 17 30 30 H 1.09000 * 109.63146 * 51.59395 * 19 18 17 31 31 H 1.08996 * 109.36068 * 283.00577 * 20 15 14 32 32 H 1.09003 * 109.35964 * 42.60144 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0078 -1.2141 0.0005 8 1 3.0877 -1.2141 0.0001 9 6 1.3045 -2.4324 0.0016 10 7 -0.0255 -2.4526 -0.1686 11 6 -0.6694 -3.5991 -0.1607 12 6 0.0059 -4.8028 0.0116 13 7 1.3133 -4.8355 0.1782 14 6 2.0130 -3.7022 0.1833 15 6 3.4714 -3.7247 0.3687 16 6 3.9717 -3.1292 1.4329 17 6 5.4389 -3.0720 1.7443 18 6 6.1945 -4.1173 0.9213 19 6 5.7675 -3.9839 -0.5457 20 6 4.3058 -4.4193 -0.6678 21 1 -0.4851 0.8400 0.0004 22 1 -1.7410 -3.6066 -0.2949 23 1 -0.5511 -5.7280 0.0092 24 1 3.2863 -2.6586 2.1222 25 1 5.5932 -3.2670 2.8055 26 1 5.8178 -2.0789 1.5026 27 1 5.9503 -5.1157 1.2843 28 1 7.2674 -3.9455 1.0073 29 1 6.3932 -4.6229 -1.1688 30 1 5.8681 -2.9461 -0.8634 31 1 4.2368 -5.4976 -0.5240 32 1 3.9345 -4.1647 -1.6605 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241714643.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:27 Heat of formation + Delta-G solvation = 13.398794 kcal Electronic energy + Delta-G solvation = -15712.825531 eV Core-core repulsion = 13250.575775 eV Total energy + Delta-G solvation = -2462.249756 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.70251 -38.86976 -35.99396 -34.20201 -33.03104 -31.49411 -30.31483 -27.93769 -24.89705 -23.90698 -23.52917 -22.22608 -19.55015 -18.60367 -17.86266 -17.29660 -16.75635 -15.95931 -15.38470 -15.01807 -14.77418 -14.52146 -14.24516 -13.80406 -13.29796 -13.25792 -13.12103 -13.03089 -12.97002 -12.52035 -11.97207 -11.75669 -11.57743 -11.50612 -11.28045 -11.09012 -10.97367 -9.84871 -9.46501 -9.10549 -8.41741 -6.64330 0.49209 1.04064 1.37385 1.50063 1.54688 1.59401 2.15084 2.73368 3.72024 3.76670 4.02848 4.14407 4.16775 4.25734 4.38108 4.57791 4.63023 4.71151 4.78516 4.81925 4.93605 5.07224 5.10129 5.13583 5.16777 5.18425 5.30427 5.47598 5.56768 5.79093 5.89690 6.10776 6.31901 6.47924 6.72683 7.34545 7.91105 8.23647 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.018979 B = 0.012053 C = 0.007964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.949909 B = 2322.465030 C = 3515.108448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.019 3.981 3 Si 0.990 3.010 4 H -0.245 1.245 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.412 4.412 8 H 0.103 0.897 9 C 0.185 3.815 10 N -0.501 5.501 11 C 0.072 3.928 12 C -0.141 4.141 13 N -0.435 5.435 14 C -0.039 4.039 15 C -0.043 4.043 16 C -0.153 4.153 17 C -0.079 4.079 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.068 4.068 21 H 0.287 0.713 22 H 0.152 0.848 23 H 0.153 0.847 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.943 -0.491 0.849 9.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.205 4.205 3 Si 0.808 3.192 4 H -0.167 1.167 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.442 4.442 8 H 0.121 0.879 9 C 0.059 3.941 10 N -0.218 5.218 11 C -0.096 4.096 12 C -0.298 4.298 13 N -0.146 5.146 14 C -0.190 4.190 15 C -0.045 4.045 16 C -0.173 4.173 17 C -0.115 4.115 18 C -0.150 4.150 19 C -0.149 4.149 20 C -0.105 4.105 21 H 0.098 0.902 22 H 0.170 0.830 23 H 0.170 0.830 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.630 -0.394 0.829 9.673 hybrid contribution -0.910 0.439 -0.042 1.011 sum 8.720 0.046 0.788 8.756 Atomic orbital electron populations 1.70133 1.09343 1.30205 1.26789 1.27256 0.95780 1.05152 0.92331 0.85030 0.79912 0.75065 0.79155 1.16725 1.18805 1.18687 1.20003 0.95599 0.89339 1.39260 0.87888 1.20976 0.89176 0.93435 0.90472 1.69479 1.08418 1.25860 1.18067 1.23811 1.01087 0.90154 0.94552 1.22836 0.91428 0.98641 1.16939 1.67919 1.08363 1.30166 1.08191 1.22233 0.95156 0.89392 1.12187 1.19158 0.89009 0.99672 0.96625 1.22483 0.97730 1.00336 0.96759 1.20431 0.89988 1.00359 1.00758 1.21587 1.00388 0.98763 0.94288 1.21594 0.93688 1.01809 0.97830 1.20271 0.95197 0.99107 0.95956 0.90189 0.83033 0.82971 0.90727 0.89983 0.90150 0.92169 0.89038 0.89704 0.91914 0.91470 0.93470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.11 11.54 21.87 0.25 -38.86 16 2 C 0.02 0.92 5.50 85.34 0.47 1.39 16 3 Si 0.99 36.08 29.56 68.60 2.03 38.11 16 4 H -0.24 -8.40 7.11 99.48 0.71 -7.69 16 5 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 6 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 7 C -0.41 -21.70 8.40 23.34 0.20 -21.50 16 8 H 0.10 5.09 6.38 -2.91 -0.02 5.07 16 9 C 0.19 10.46 6.67 41.56 0.28 10.74 16 10 N -0.50 -28.70 8.13 -184.05 -1.50 -30.20 16 11 C 0.07 3.61 11.17 84.95 0.95 4.56 16 12 C -0.14 -6.84 11.17 84.90 0.95 -5.90 16 13 N -0.43 -22.57 10.46 -179.10 -1.87 -24.44 16 14 C -0.04 -2.02 6.16 43.41 0.27 -1.75 16 15 C -0.04 -1.88 4.79 -18.52 -0.09 -1.97 16 16 C -0.15 -6.01 8.03 24.72 0.20 -5.81 16 17 C -0.08 -2.20 6.11 29.66 0.18 -2.02 16 18 C -0.11 -2.71 6.00 30.72 0.18 -2.52 16 19 C -0.11 -3.00 6.00 30.72 0.18 -2.82 16 20 C -0.07 -2.45 5.79 29.66 0.17 -2.28 16 21 H 0.29 13.43 8.29 -92.71 -0.77 12.66 16 22 H 0.15 6.52 8.06 -2.91 -0.02 6.50 16 23 H 0.15 6.26 8.06 -2.91 -0.02 6.23 16 24 H 0.07 3.31 7.92 -2.91 -0.02 3.28 16 25 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.06 1.48 8.12 -2.39 -0.02 1.46 16 28 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.71 8.12 -2.39 -0.02 1.69 16 31 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -65.36 270.57 3.96 -61.40 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 1.11 Total: 23.86 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 3.94 Total: -29.88 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -3.12 Total: -93.49 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.03 Total: 38.11 kcal Total: -65.36 3.96 -61.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241714643.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.802 kcal (2) G-P(sol) polarization free energy of solvation -65.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds