Wall clock time and date at job start Sun Mar 29 2020 21:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86795 * 120.00426 * 2 1 4 4 H 1.48502 * 109.46915 * 274.66323 * 3 2 1 5 5 H 1.48500 * 109.47059 * 34.65990 * 3 2 1 6 6 H 1.48490 * 109.47327 * 154.66248 * 3 2 1 7 7 C 1.40051 * 119.99469 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99531 * 162.17110 * 7 2 1 9 9 C 1.41315 * 120.00190 * 342.16776 * 7 2 1 10 10 C 1.40874 * 120.13814 * 335.20820 * 9 7 2 11 11 N 1.31875 * 120.00227 * 179.97438 * 10 9 7 12 12 C 1.32174 * 120.30369 * 359.72412 * 11 10 9 13 13 C 1.40194 * 120.27088 * 0.53206 * 12 11 10 14 14 C 1.47692 * 119.99725 * 179.75116 * 13 12 11 15 15 C 1.31217 * 118.07958 * 179.71988 * 14 13 12 16 16 C 1.50091 * 123.83855 * 180.42852 * 15 14 13 17 17 C 1.53009 * 110.13922 * 342.83753 * 16 15 14 18 18 C 1.53372 * 108.49459 * 49.69556 * 17 16 15 19 19 C 1.50086 * 118.08792 * 359.71968 * 14 13 12 20 20 N 1.32694 * 119.99503 * 359.47201 * 13 12 11 21 21 H 0.97003 * 120.00022 * 359.97438 * 1 2 3 22 22 H 1.07997 * 119.99856 * 359.94838 * 10 9 7 23 23 H 1.08002 * 119.86458 * 180.27544 * 12 11 10 24 24 H 1.08005 * 118.08408 * 0.71857 * 15 14 13 25 25 H 1.09003 * 109.36097 * 103.04289 * 16 15 14 26 26 H 1.09007 * 109.36339 * 222.63074 * 16 15 14 27 27 H 1.08994 * 109.63785 * 169.39950 * 17 16 15 28 28 H 1.09006 * 109.62947 * 289.99721 * 17 16 15 29 29 H 1.09001 * 109.63125 * 51.76746 * 18 17 16 30 30 H 1.09002 * 109.63462 * 172.36345 * 18 17 16 31 31 H 1.08994 * 109.35814 * 42.63003 * 19 14 13 32 32 H 1.09003 * 109.36260 * 283.04206 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 2.3903 2.1032 -1.3955 5 1 1.4916 2.6222 0.7962 6 1 3.5847 1.4136 0.5991 7 6 2.0074 -1.2129 -0.0005 8 1 3.0485 -1.2353 -0.2869 9 6 1.3517 -2.4075 0.3737 10 6 0.2242 -2.3611 1.2170 11 7 -0.3860 -3.4775 1.5641 12 6 0.0520 -4.6428 1.1199 13 6 1.1761 -4.7035 0.2845 14 6 1.6636 -6.0093 -0.2039 15 6 2.7154 -6.0219 -0.9883 16 6 3.3130 -7.2721 -1.5650 17 6 2.8168 -8.4972 -0.7944 18 6 1.2889 -8.4180 -0.6864 19 6 0.9269 -7.2443 0.2260 20 7 1.7988 -3.5872 -0.0719 21 1 -0.4850 0.8401 0.0004 22 1 -0.1402 -1.4114 1.5795 23 1 -0.4558 -5.5523 1.4051 24 1 3.1812 -5.0777 -1.2294 25 1 3.0228 -7.3617 -2.6119 26 1 4.3996 -7.2180 -1.4968 27 1 3.0997 -9.4047 -1.3277 28 1 3.2546 -8.5040 0.2038 29 1 0.8596 -8.2589 -1.6756 30 1 0.9033 -9.3447 -0.2613 31 1 -0.1463 -7.0621 0.1717 32 1 1.1985 -7.4879 1.2531 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241715392.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:12 Heat of formation + Delta-G solvation = 25.799432 kcal Electronic energy + Delta-G solvation = -15282.291150 eV Core-core repulsion = 12820.579126 eV Total energy + Delta-G solvation = -2461.712024 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.28043 -37.72476 -34.17694 -32.85319 -31.45081 -30.42537 -28.57902 -26.11123 -23.50165 -23.01884 -21.37679 -21.00452 -17.92812 -17.05328 -15.92705 -15.67773 -15.04221 -14.88393 -14.27582 -13.58648 -13.40380 -13.01534 -12.70652 -12.49965 -12.09749 -11.96330 -11.66507 -11.36002 -11.15220 -10.95588 -10.65153 -10.52553 -10.23053 -10.03030 -9.81610 -9.67274 -9.43463 -8.57667 -7.42038 -7.24816 -7.04231 -4.69972 1.95619 2.66748 2.98957 3.03969 3.11597 3.42592 3.78671 4.49457 4.93398 5.02455 5.07667 5.38860 5.58892 5.67203 5.73346 5.81076 5.83746 5.96410 6.00429 6.09622 6.19747 6.25712 6.30119 6.37423 6.49390 6.66127 6.92248 7.00726 7.19813 7.27298 7.60520 7.65146 8.15496 8.42828 8.53487 9.18531 9.66816 9.94983 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042999 B = 0.006426 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.024068 B = 4356.351595 C = 4891.191345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.924 3.076 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.426 4.426 8 H 0.090 0.910 9 C 0.229 3.771 10 C 0.006 3.994 11 N -0.445 5.445 12 C -0.093 4.093 13 C 0.128 3.872 14 C -0.072 4.072 15 C -0.136 4.136 16 C -0.087 4.087 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.078 4.078 20 N -0.525 5.525 21 H 0.288 0.712 22 H 0.158 0.842 23 H 0.130 0.870 24 H 0.123 0.877 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.303 -8.473 -1.356 9.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.146 4.146 3 Si 0.747 3.253 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.459 4.459 8 H 0.108 0.892 9 C 0.100 3.900 10 C -0.164 4.164 11 N -0.157 5.157 12 C -0.250 4.250 13 C -0.015 4.015 14 C -0.074 4.074 15 C -0.156 4.156 16 C -0.124 4.124 17 C -0.158 4.158 18 C -0.155 4.155 19 C -0.115 4.115 20 N -0.244 5.244 21 H 0.099 0.901 22 H 0.175 0.825 23 H 0.148 0.852 24 H 0.141 0.859 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.073 -8.354 -1.343 9.002 hybrid contribution 0.164 0.876 -0.072 0.894 sum 3.237 -7.478 -1.415 8.271 Atomic orbital electron populations 1.69740 1.07856 1.30292 1.33095 1.26034 0.94853 1.01945 0.91725 0.86038 0.80597 0.79334 0.79330 1.19244 1.19689 1.18072 1.19335 0.98517 0.89274 1.38803 0.89201 1.19332 0.90866 0.90964 0.88878 1.23807 0.97472 0.95869 0.99248 1.67859 1.28609 0.98801 1.20390 1.22724 0.99944 0.95822 1.06472 1.20674 0.93335 0.92691 0.94788 1.19465 0.96849 0.91706 0.99361 1.22579 0.96610 0.98928 0.97450 1.20453 0.99869 0.92853 0.99226 1.21610 0.96077 0.97472 1.00628 1.21585 0.96004 0.97753 1.00123 1.20325 1.00002 0.92024 0.99149 1.68942 1.33008 0.97691 1.24731 0.90054 0.82511 0.85247 0.85916 0.91182 0.91354 0.92194 0.91850 0.91852 0.91948 0.90822 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.67 10.97 55.55 0.61 -19.06 16 2 C 0.08 1.83 5.13 -17.34 -0.09 1.74 16 3 Si 0.92 17.92 29.60 -169.99 -5.03 12.89 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.43 -11.31 9.28 -37.73 -0.35 -11.66 16 8 H 0.09 2.33 7.91 -52.49 -0.42 1.91 16 9 C 0.23 6.38 6.41 -84.84 -0.54 5.83 16 10 C 0.01 0.18 9.88 -16.54 -0.16 0.01 16 11 N -0.44 -11.78 10.47 -12.00 -0.13 -11.90 16 12 C -0.09 -2.25 10.49 -16.67 -0.17 -2.43 16 13 C 0.13 3.08 6.69 -82.90 -0.55 2.53 16 14 C -0.07 -1.40 5.80 -102.83 -0.60 -2.00 16 15 C -0.14 -2.46 9.40 -36.38 -0.34 -2.80 16 16 C -0.09 -1.18 6.11 -28.17 -0.17 -1.35 16 17 C -0.12 -1.43 6.00 -26.53 -0.16 -1.59 16 18 C -0.12 -1.45 6.00 -26.53 -0.16 -1.61 16 19 C -0.08 -1.19 4.93 -28.17 -0.14 -1.33 16 20 N -0.52 -14.06 9.16 -7.61 -0.07 -14.13 16 21 H 0.29 6.46 8.29 -40.82 -0.34 6.12 16 22 H 0.16 4.29 6.17 -52.49 -0.32 3.96 16 23 H 0.13 2.70 6.46 -52.49 -0.34 2.36 16 24 H 0.12 2.52 7.04 -52.48 -0.37 2.15 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 29 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.13 6.98 -51.93 -0.36 0.76 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 267.42 15.07 4.03 4.03 Total: -1.00 -29.01 267.42 -7.93 -36.94 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.90 Total: 5.88 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -3.44 Total: -14.66 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.41 Total: -45.09 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.01 -7.93 -36.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241715392.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.742 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds