Wall clock time and date at job start Sun Mar 29 2020 21:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86795 * 120.00426 * 2 1 4 4 H 1.48502 * 109.46915 * 274.66323 * 3 2 1 5 5 H 1.48500 * 109.47059 * 34.65990 * 3 2 1 6 6 H 1.48490 * 109.47327 * 154.66248 * 3 2 1 7 7 C 1.40051 * 119.99469 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99531 * 162.17110 * 7 2 1 9 9 C 1.41315 * 120.00190 * 342.16776 * 7 2 1 10 10 C 1.40874 * 120.13814 * 335.20820 * 9 7 2 11 11 N 1.31875 * 120.00227 * 179.97438 * 10 9 7 12 12 C 1.32174 * 120.30369 * 359.72412 * 11 10 9 13 13 C 1.40194 * 120.27088 * 0.53206 * 12 11 10 14 14 C 1.47692 * 119.99725 * 179.75116 * 13 12 11 15 15 C 1.31217 * 118.07958 * 179.71988 * 14 13 12 16 16 C 1.50091 * 123.83855 * 180.42852 * 15 14 13 17 17 C 1.53009 * 110.13922 * 342.83753 * 16 15 14 18 18 C 1.53372 * 108.49459 * 49.69556 * 17 16 15 19 19 C 1.50086 * 118.08792 * 359.71968 * 14 13 12 20 20 N 1.32694 * 119.99503 * 359.47201 * 13 12 11 21 21 H 0.97003 * 120.00022 * 359.97438 * 1 2 3 22 22 H 1.07997 * 119.99856 * 359.94838 * 10 9 7 23 23 H 1.08002 * 119.86458 * 180.27544 * 12 11 10 24 24 H 1.08005 * 118.08408 * 0.71857 * 15 14 13 25 25 H 1.09003 * 109.36097 * 103.04289 * 16 15 14 26 26 H 1.09007 * 109.36339 * 222.63074 * 16 15 14 27 27 H 1.08994 * 109.63785 * 169.39950 * 17 16 15 28 28 H 1.09006 * 109.62947 * 289.99721 * 17 16 15 29 29 H 1.09001 * 109.63125 * 51.76746 * 18 17 16 30 30 H 1.09002 * 109.63462 * 172.36345 * 18 17 16 31 31 H 1.08994 * 109.35814 * 42.63003 * 19 14 13 32 32 H 1.09003 * 109.36260 * 283.04206 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 2.3903 2.1032 -1.3955 5 1 1.4916 2.6222 0.7962 6 1 3.5847 1.4136 0.5991 7 6 2.0074 -1.2129 -0.0005 8 1 3.0485 -1.2353 -0.2869 9 6 1.3517 -2.4075 0.3737 10 6 0.2242 -2.3611 1.2170 11 7 -0.3860 -3.4775 1.5641 12 6 0.0520 -4.6428 1.1199 13 6 1.1761 -4.7035 0.2845 14 6 1.6636 -6.0093 -0.2039 15 6 2.7154 -6.0219 -0.9883 16 6 3.3130 -7.2721 -1.5650 17 6 2.8168 -8.4972 -0.7944 18 6 1.2889 -8.4180 -0.6864 19 6 0.9269 -7.2443 0.2260 20 7 1.7988 -3.5872 -0.0719 21 1 -0.4850 0.8401 0.0004 22 1 -0.1402 -1.4114 1.5795 23 1 -0.4558 -5.5523 1.4051 24 1 3.1812 -5.0777 -1.2294 25 1 3.0228 -7.3617 -2.6119 26 1 4.3996 -7.2180 -1.4968 27 1 3.0997 -9.4047 -1.3277 28 1 3.2546 -8.5040 0.2038 29 1 0.8596 -8.2589 -1.6756 30 1 0.9033 -9.3447 -0.2613 31 1 -0.1463 -7.0621 0.1717 32 1 1.1985 -7.4879 1.2531 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241715392.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:12 Heat of formation + Delta-G solvation = 8.438920 kcal Electronic energy + Delta-G solvation = -15283.043958 eV Core-core repulsion = 12820.579126 eV Total energy + Delta-G solvation = -2462.464832 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12668 -39.07409 -36.07979 -34.69016 -33.11004 -31.63586 -30.26695 -28.03671 -24.99510 -24.66992 -23.08859 -22.32555 -19.71270 -18.49594 -17.81803 -17.38600 -16.78991 -16.63559 -15.57507 -15.06948 -14.83700 -14.53197 -14.11406 -13.85794 -13.56962 -13.26141 -13.18114 -13.10403 -12.82452 -12.76594 -12.06097 -11.86915 -11.76855 -11.60522 -11.36111 -11.21146 -11.05668 -10.31734 -9.37779 -9.05991 -8.91178 -6.72300 0.17081 0.77883 1.37451 1.46271 1.56030 1.73551 2.14976 2.61081 3.51540 3.68850 3.88044 4.02481 4.12207 4.15793 4.32429 4.49121 4.54507 4.66978 4.75366 4.79231 4.91662 5.00579 5.05445 5.09578 5.14881 5.21252 5.28135 5.41188 5.52870 5.68025 5.75398 6.05930 6.20202 6.47356 6.53745 7.17744 7.66397 8.11369 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042999 B = 0.006426 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.024068 B = 4356.351595 C = 4891.191345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.039 3.961 3 Si 1.005 2.995 4 H -0.258 1.258 5 H -0.257 1.257 6 H -0.256 1.256 7 C -0.455 4.455 8 H 0.086 0.914 9 C 0.200 3.800 10 C -0.028 4.028 11 N -0.454 5.454 12 C -0.105 4.105 13 C 0.124 3.876 14 C -0.097 4.097 15 C -0.121 4.121 16 C -0.085 4.085 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.074 4.074 20 N -0.550 5.550 21 H 0.301 0.699 22 H 0.149 0.851 23 H 0.164 0.836 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.074 -9.821 -1.953 10.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.180 4.180 3 Si 0.823 3.177 4 H -0.182 1.182 5 H -0.180 1.180 6 H -0.180 1.180 7 C -0.488 4.488 8 H 0.104 0.896 9 C 0.072 3.928 10 C -0.196 4.196 11 N -0.166 5.166 12 C -0.262 4.262 13 C -0.020 4.020 14 C -0.098 4.098 15 C -0.141 4.141 16 C -0.122 4.122 17 C -0.154 4.154 18 C -0.150 4.150 19 C -0.111 4.111 20 N -0.270 5.270 21 H 0.112 0.888 22 H 0.166 0.834 23 H 0.181 0.819 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.824 -9.694 -1.936 10.599 hybrid contribution -0.059 1.213 0.046 1.215 sum 3.766 -8.481 -1.890 9.470 Atomic orbital electron populations 1.69765 1.09470 1.32159 1.32180 1.27034 0.95615 1.05116 0.90243 0.84866 0.78930 0.74088 0.79856 1.18212 1.18043 1.17963 1.19625 0.98608 0.90413 1.40123 0.89624 1.19696 0.91549 0.91981 0.89527 1.23615 0.98802 0.96015 1.01206 1.67802 1.28838 0.99365 1.20615 1.23276 1.00331 0.96149 1.06426 1.21510 0.92788 0.94021 0.93651 1.19747 0.98299 0.91039 1.00739 1.22820 0.95483 0.99944 0.95888 1.20552 1.00513 0.91229 0.99912 1.21627 0.95503 0.97538 1.00717 1.21597 0.96544 0.97354 0.99475 1.20375 0.99208 0.91221 1.00338 1.69017 1.33958 0.98319 1.25709 0.88761 0.83406 0.81936 0.89274 0.89620 0.89811 0.89092 0.91911 0.91913 0.89140 0.91091 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.54 10.97 21.84 0.24 -41.30 16 2 C 0.04 1.91 5.13 85.30 0.44 2.35 16 3 Si 1.00 36.60 29.60 68.60 2.03 38.63 16 4 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 5 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 6 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 7 C -0.45 -25.16 9.28 23.47 0.22 -24.95 16 8 H 0.09 4.63 7.91 -2.91 -0.02 4.61 16 9 C 0.20 11.71 6.41 40.25 0.26 11.97 16 10 C -0.03 -1.60 9.88 85.33 0.84 -0.76 16 11 N -0.45 -24.83 10.47 -191.89 -2.01 -26.84 16 12 C -0.10 -5.13 10.49 85.12 0.89 -4.24 16 13 C 0.12 6.11 6.69 41.99 0.28 6.39 16 14 C -0.10 -3.70 5.80 -17.81 -0.10 -3.81 16 15 C -0.12 -4.31 9.40 25.24 0.24 -4.07 16 16 C -0.09 -2.07 6.11 29.66 0.18 -1.89 16 17 C -0.12 -2.29 6.00 30.72 0.18 -2.11 16 18 C -0.11 -2.36 6.00 30.72 0.18 -2.18 16 19 C -0.07 -2.11 4.93 29.66 0.15 -1.97 16 20 N -0.55 -30.76 9.16 -177.98 -1.63 -32.39 16 21 H 0.30 13.56 8.29 -92.71 -0.77 12.79 16 22 H 0.15 8.55 6.17 -2.91 -0.02 8.53 16 23 H 0.16 6.67 6.46 -2.91 -0.02 6.65 16 24 H 0.09 3.77 7.04 -2.91 -0.02 3.75 16 25 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.27 8.12 -2.38 -0.02 1.25 16 29 H 0.06 1.35 8.12 -2.39 -0.02 1.33 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 2.04 6.98 -2.39 -0.02 2.02 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -66.04 267.42 3.51 -62.53 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 1.12 Total: 24.64 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 3.76 Total: -25.26 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -3.40 Total: -100.54 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -66.04 3.51 -62.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241715392.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.967 kcal (2) G-P(sol) polarization free energy of solvation -66.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds