Wall clock time and date at job start Sun Mar 29 2020 21:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30655 * 1 3 3 Si 1.86805 * 120.00145 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72646 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72556 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72661 * 3 2 1 7 7 C 1.40165 * 119.99983 * 179.72681 * 2 1 3 8 8 H 1.08000 * 119.99573 * 179.97438 * 7 2 1 9 9 C 1.40956 * 120.00022 * 0.02562 * 7 2 1 10 10 N 1.33705 * 119.10401 * 359.72845 * 9 7 2 11 11 C 1.31514 * 120.85150 * 179.71325 * 10 9 7 12 12 C 1.40697 * 119.06680 * 0.54989 * 11 10 9 13 13 C 1.47198 * 120.81308 * 179.70432 * 12 11 10 14 14 C 1.31776 * 118.11790 * 244.75755 * 13 12 11 15 15 C 1.50096 * 123.76516 * 180.14228 * 14 13 12 16 16 C 1.53008 * 110.18908 * 343.31578 * 15 14 13 17 17 C 1.53361 * 108.51548 * 49.57526 * 16 15 14 18 18 C 1.50090 * 118.11957 * 65.02484 * 13 12 11 19 19 C 1.40688 * 118.37014 * 359.73003 * 12 11 10 20 20 N 1.31520 * 119.06323 * 359.97438 * 19 12 11 21 21 H 0.97000 * 119.99682 * 0.27120 * 1 2 3 22 22 H 1.08004 * 120.46704 * 180.27460 * 11 10 9 23 23 H 1.08000 * 118.11867 * 0.42209 * 14 13 12 24 24 H 1.09000 * 109.50108 * 222.99089 * 15 14 13 25 25 H 1.09000 * 109.16336 * 103.43221 * 15 14 13 26 26 H 1.08993 * 109.63023 * 289.86494 * 16 15 14 27 27 H 1.08999 * 109.62420 * 169.27921 * 16 15 14 28 28 H 1.09001 * 109.63187 * 172.19437 * 17 16 15 29 29 H 1.08995 * 109.63384 * 51.61150 * 17 16 15 30 30 H 1.09000 * 109.36092 * 283.02768 * 18 13 12 31 31 H 1.09002 * 109.36295 * 42.75894 * 18 13 12 32 32 H 1.07996 * 120.47187 * 179.97438 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4939 2.0430 -1.4001 5 1 1.4351 2.6543 0.6942 6 1 3.5352 1.4418 0.7058 7 6 2.0074 -1.2139 0.0058 8 1 3.0874 -1.2138 0.0054 9 6 1.3026 -2.4346 0.0111 10 7 -0.0343 -2.4136 0.0160 11 6 -0.7263 -3.5320 0.0153 12 6 -0.0402 -4.7603 0.0212 13 6 -0.7763 -6.0351 0.0272 14 6 -0.6576 -6.8157 1.0822 15 6 -1.3476 -8.1415 1.2207 16 6 -2.4856 -8.2533 0.2041 17 6 -1.9437 -7.8680 -1.1779 18 6 -1.6140 -6.3739 -1.1712 19 6 1.3665 -4.7403 0.0217 20 7 1.9890 -3.5818 0.0162 21 1 -0.4850 0.8401 -0.0040 22 1 -1.8061 -3.5078 0.0149 23 1 -0.0314 -6.4804 1.8957 24 1 -1.7523 -8.2375 2.2282 25 1 -0.6267 -8.9400 1.0455 26 1 -3.2932 -7.5764 0.4826 27 1 -2.8552 -9.2784 0.1797 28 1 -2.6983 -8.0731 -1.9373 29 1 -1.0413 -8.4412 -1.3903 30 1 -2.5399 -5.7996 -1.1388 31 1 -1.0648 -6.1230 -2.0787 32 1 1.9273 -5.6633 0.0265 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241717627.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:21 Heat of formation + Delta-G solvation = 35.488853 kcal Electronic energy + Delta-G solvation = -15197.279936 eV Core-core repulsion = 12735.988077 eV Total energy + Delta-G solvation = -2461.291859 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.06072 -37.68892 -33.91846 -32.09703 -31.72163 -30.37078 -28.87863 -25.90907 -23.09350 -22.72556 -21.99441 -20.87909 -17.91415 -17.19889 -15.99734 -15.69889 -14.97628 -14.47251 -14.15777 -13.48773 -13.25198 -12.76595 -12.68234 -12.42899 -12.12566 -11.94969 -11.91997 -11.32042 -11.27805 -10.74381 -10.62318 -10.42222 -10.28017 -10.10805 -9.49729 -9.13423 -8.96879 -8.49703 -7.68691 -7.22355 -6.55862 -4.73654 2.37766 2.88436 3.01077 3.03151 3.07534 3.14400 3.85056 4.60275 5.06075 5.07523 5.10037 5.61710 5.70235 5.80635 5.81624 5.83057 5.83898 5.93903 5.96038 6.08045 6.13074 6.23528 6.31325 6.35774 6.50140 6.61611 6.88339 7.03847 7.22254 7.29132 7.60000 7.73984 8.13403 8.47993 8.55088 9.11167 10.08415 10.26628 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.063723 B = 0.005596 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.299516 B = 5002.028539 C = 5170.890654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.064 3.936 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.393 4.393 8 H 0.093 0.907 9 C 0.385 3.615 10 N -0.509 5.509 11 C 0.175 3.825 12 C -0.331 4.331 13 C -0.020 4.020 14 C -0.190 4.190 15 C -0.079 4.079 16 C -0.119 4.119 17 C -0.118 4.118 18 C -0.081 4.081 19 C 0.179 3.821 20 N -0.596 5.596 21 H 0.276 0.724 22 H 0.126 0.874 23 H 0.098 0.902 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.266 -8.754 -0.393 9.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.163 4.163 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.428 4.428 8 H 0.111 0.889 9 C 0.150 3.850 10 N -0.225 5.225 11 C -0.001 4.001 12 C -0.341 4.341 13 C -0.022 4.022 14 C -0.209 4.209 15 C -0.116 4.116 16 C -0.156 4.156 17 C -0.155 4.155 18 C -0.118 4.118 19 C 0.006 3.994 20 N -0.315 5.315 21 H 0.087 0.913 22 H 0.143 0.857 23 H 0.116 0.884 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.883 -7.576 -0.383 8.522 hybrid contribution -0.187 -0.162 0.040 0.251 sum -4.070 -7.739 -0.343 8.750 Atomic orbital electron populations 1.70131 1.07397 1.28297 1.26853 1.26171 0.95039 1.01532 0.93583 0.86127 0.80391 0.79758 0.79439 1.19164 1.19930 1.18236 1.19354 0.94889 0.87856 1.40661 0.88873 1.19924 0.85909 0.90811 0.88352 1.69324 1.08086 1.26763 1.18299 1.23017 0.98786 0.87880 0.90429 1.19964 0.95219 0.93919 1.25030 1.19384 0.95810 0.93098 0.93862 1.22347 1.03578 0.96432 0.98525 1.20318 0.96720 0.95907 0.98689 1.21580 0.98088 1.00539 0.95443 1.21591 1.00553 0.96589 0.96778 1.20420 0.99093 0.95190 0.97079 1.22680 0.90328 0.95615 0.90791 1.68615 1.40782 0.98531 1.23583 0.91251 0.85661 0.88388 0.91946 0.91935 0.91925 0.92452 0.92283 0.92034 0.91293 0.91329 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.57 11.40 55.56 0.63 -17.93 16 2 C 0.06 1.63 5.50 -17.33 -0.10 1.53 16 3 Si 0.92 18.43 29.56 -169.99 -5.02 13.41 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.39 -10.86 9.35 -37.83 -0.35 -11.21 16 8 H 0.09 2.47 7.85 -52.49 -0.41 2.06 16 9 C 0.38 11.01 7.35 -158.12 -1.16 9.85 16 10 N -0.51 -14.22 7.82 -12.36 -0.10 -14.31 16 11 C 0.17 4.25 11.06 -16.76 -0.19 4.06 16 12 C -0.33 -7.35 5.15 -104.41 -0.54 -7.89 16 13 C -0.02 -0.36 5.31 -103.17 -0.55 -0.91 16 14 C -0.19 -3.13 9.41 -36.49 -0.34 -3.48 16 15 C -0.08 -1.03 6.11 -28.17 -0.17 -1.20 16 16 C -0.12 -1.41 6.00 -26.54 -0.16 -1.57 16 17 C -0.12 -1.47 6.00 -26.54 -0.16 -1.62 16 18 C -0.08 -1.24 5.76 -28.17 -0.16 -1.40 16 19 C 0.18 4.22 10.99 -16.76 -0.18 4.04 16 20 N -0.60 -16.12 10.33 -12.37 -0.13 -16.25 16 21 H 0.28 6.50 8.29 -40.82 -0.34 6.16 16 22 H 0.13 2.73 8.06 -52.48 -0.42 2.30 16 23 H 0.10 1.73 7.95 -52.49 -0.42 1.31 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.13 2.59 8.06 -52.49 -0.42 2.17 16 LS Contribution 273.70 15.07 4.12 4.12 Total: -1.00 -29.53 273.70 -8.74 -38.27 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.19 Total: 2.48 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -4.06 Total: -9.79 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.41 Total: -48.50 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.41 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.53 -8.74 -38.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241717627.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.758 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds