Wall clock time and date at job start Sun Mar 29 2020 21:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30655 * 1 3 3 Si 1.86805 * 120.00145 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72646 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72556 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72661 * 3 2 1 7 7 C 1.40165 * 119.99983 * 179.72681 * 2 1 3 8 8 H 1.08000 * 119.99573 * 179.97438 * 7 2 1 9 9 C 1.40956 * 120.00022 * 0.02562 * 7 2 1 10 10 N 1.33705 * 119.10401 * 359.72845 * 9 7 2 11 11 C 1.31514 * 120.85150 * 179.71325 * 10 9 7 12 12 C 1.40697 * 119.06680 * 0.54989 * 11 10 9 13 13 C 1.47198 * 120.81308 * 179.70432 * 12 11 10 14 14 C 1.31776 * 118.11790 * 244.75755 * 13 12 11 15 15 C 1.50096 * 123.76516 * 180.14228 * 14 13 12 16 16 C 1.53008 * 110.18908 * 343.31578 * 15 14 13 17 17 C 1.53361 * 108.51548 * 49.57526 * 16 15 14 18 18 C 1.50090 * 118.11957 * 65.02484 * 13 12 11 19 19 C 1.40688 * 118.37014 * 359.73003 * 12 11 10 20 20 N 1.31520 * 119.06323 * 359.97438 * 19 12 11 21 21 H 0.97000 * 119.99682 * 0.27120 * 1 2 3 22 22 H 1.08004 * 120.46704 * 180.27460 * 11 10 9 23 23 H 1.08000 * 118.11867 * 0.42209 * 14 13 12 24 24 H 1.09000 * 109.50108 * 222.99089 * 15 14 13 25 25 H 1.09000 * 109.16336 * 103.43221 * 15 14 13 26 26 H 1.08993 * 109.63023 * 289.86494 * 16 15 14 27 27 H 1.08999 * 109.62420 * 169.27921 * 16 15 14 28 28 H 1.09001 * 109.63187 * 172.19437 * 17 16 15 29 29 H 1.08995 * 109.63384 * 51.61150 * 17 16 15 30 30 H 1.09000 * 109.36092 * 283.02768 * 18 13 12 31 31 H 1.09002 * 109.36295 * 42.75894 * 18 13 12 32 32 H 1.07996 * 120.47187 * 179.97438 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4939 2.0430 -1.4001 5 1 1.4351 2.6543 0.6942 6 1 3.5352 1.4418 0.7058 7 6 2.0074 -1.2139 0.0058 8 1 3.0874 -1.2138 0.0054 9 6 1.3026 -2.4346 0.0111 10 7 -0.0343 -2.4136 0.0160 11 6 -0.7263 -3.5320 0.0153 12 6 -0.0402 -4.7603 0.0212 13 6 -0.7763 -6.0351 0.0272 14 6 -0.6576 -6.8157 1.0822 15 6 -1.3476 -8.1415 1.2207 16 6 -2.4856 -8.2533 0.2041 17 6 -1.9437 -7.8680 -1.1779 18 6 -1.6140 -6.3739 -1.1712 19 6 1.3665 -4.7403 0.0217 20 7 1.9890 -3.5818 0.0162 21 1 -0.4850 0.8401 -0.0040 22 1 -1.8061 -3.5078 0.0149 23 1 -0.0314 -6.4804 1.8957 24 1 -1.7523 -8.2375 2.2282 25 1 -0.6267 -8.9400 1.0455 26 1 -3.2932 -7.5764 0.4826 27 1 -2.8552 -9.2784 0.1797 28 1 -2.6983 -8.0731 -1.9373 29 1 -1.0413 -8.4412 -1.3903 30 1 -2.5399 -5.7996 -1.1388 31 1 -1.0648 -6.1230 -2.0787 32 1 1.9273 -5.6633 0.0265 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241717627.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:20 Heat of formation + Delta-G solvation = 19.233893 kcal Electronic energy + Delta-G solvation = -15197.984804 eV Core-core repulsion = 12735.988077 eV Total energy + Delta-G solvation = -2461.996727 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.90380 -39.00871 -35.78443 -33.84913 -33.51518 -31.51310 -30.58471 -27.70357 -24.74403 -24.32097 -23.49631 -22.25177 -19.83342 -18.48011 -17.93810 -17.15355 -16.80823 -16.16964 -15.28704 -15.00282 -14.56694 -14.47594 -14.18700 -13.95222 -13.69620 -13.13382 -13.09438 -13.07404 -12.90296 -12.70082 -11.98141 -11.64102 -11.58794 -11.36619 -11.24130 -11.12118 -10.68453 -10.07977 -9.51854 -9.06325 -8.45645 -6.75158 0.56779 1.03625 1.38717 1.40791 1.54310 1.57236 2.18463 2.71128 3.83272 3.94744 3.96485 4.01616 4.02869 4.13629 4.35912 4.50322 4.55432 4.65485 4.72847 4.81545 4.98338 5.05711 5.11653 5.14641 5.17125 5.25564 5.36869 5.40422 5.55063 5.73803 5.91774 6.11334 6.28306 6.49323 6.58010 7.15343 8.17932 8.32547 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.063723 B = 0.005596 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.299516 B = 5002.028539 C = 5170.890654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.022 3.978 3 Si 1.002 2.998 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.256 1.256 7 C -0.433 4.433 8 H 0.090 0.910 9 C 0.355 3.645 10 N -0.540 5.540 11 C 0.154 3.846 12 C -0.309 4.309 13 C -0.047 4.047 14 C -0.169 4.169 15 C -0.080 4.080 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.077 4.077 19 C 0.163 3.837 20 N -0.622 5.622 21 H 0.286 0.714 22 H 0.146 0.854 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 -10.148 -0.306 11.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.201 4.201 3 Si 0.821 3.179 4 H -0.182 1.182 5 H -0.184 1.184 6 H -0.180 1.180 7 C -0.468 4.468 8 H 0.108 0.892 9 C 0.119 3.881 10 N -0.257 5.257 11 C -0.019 4.019 12 C -0.318 4.318 13 C -0.049 4.049 14 C -0.187 4.187 15 C -0.116 4.116 16 C -0.154 4.154 17 C -0.150 4.150 18 C -0.115 4.115 19 C -0.009 4.009 20 N -0.342 5.342 21 H 0.097 0.903 22 H 0.163 0.837 23 H 0.100 0.900 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.707 -9.033 -0.295 10.190 hybrid contribution 0.003 0.061 0.066 0.090 sum -4.704 -8.973 -0.229 10.133 Atomic orbital electron populations 1.70190 1.09057 1.29940 1.27294 1.27142 0.95919 1.04775 0.92309 0.84920 0.78758 0.74422 0.79829 1.18245 1.18446 1.17989 1.19675 0.95027 0.89081 1.43007 0.89226 1.20328 0.86594 0.91756 0.89443 1.69273 1.08137 1.28563 1.19683 1.23480 0.99795 0.88198 0.90473 1.20343 0.94979 0.95316 1.21182 1.19403 0.97565 0.91789 0.96127 1.22584 1.01813 0.97478 0.96853 1.20413 0.97366 0.93720 1.00145 1.21597 0.97352 1.02185 0.94262 1.21578 1.01396 0.93914 0.98064 1.20388 0.98298 0.97757 0.95015 1.23242 0.91516 0.95688 0.90436 1.68615 1.41549 0.99259 1.24767 0.90300 0.83704 0.90046 0.90411 0.90161 0.92242 0.89632 0.90203 0.91752 0.91183 0.92660 0.82777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -40.11 11.40 21.86 0.25 -39.86 16 2 C 0.02 1.16 5.50 85.34 0.47 1.63 16 3 Si 1.00 38.19 29.56 68.60 2.03 40.21 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 5 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.43 -24.90 9.35 23.40 0.22 -24.68 16 8 H 0.09 4.97 7.85 -2.91 -0.02 4.95 16 9 C 0.35 21.17 7.35 134.84 0.99 22.16 16 10 N -0.54 -31.30 7.82 -193.03 -1.51 -32.81 16 11 C 0.15 7.69 11.06 85.34 0.94 8.63 16 12 C -0.31 -13.80 5.15 -19.72 -0.10 -13.90 16 13 C -0.05 -1.65 5.31 -18.45 -0.10 -1.75 16 14 C -0.17 -5.21 9.41 24.75 0.23 -4.97 16 15 C -0.08 -1.76 6.11 29.66 0.18 -1.58 16 16 C -0.12 -2.27 6.00 30.72 0.18 -2.09 16 17 C -0.11 -2.41 6.00 30.72 0.18 -2.22 16 18 C -0.08 -2.25 5.76 29.66 0.17 -2.08 16 19 C 0.16 7.79 10.99 85.34 0.94 8.72 16 20 N -0.62 -34.81 10.33 -193.04 -1.99 -36.80 16 21 H 0.29 13.67 8.29 -92.71 -0.77 12.91 16 22 H 0.15 6.40 8.06 -2.91 -0.02 6.38 16 23 H 0.08 2.77 7.95 -2.91 -0.02 2.75 16 24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.36 8.12 -2.39 -0.02 1.34 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.16 6.28 8.06 -2.91 -0.02 6.26 16 Total: -1.00 -66.46 273.70 4.19 -62.27 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 1.10 Total: 19.11 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: 4.32 Total: -12.12 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -3.25 Total: -109.47 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 2.03 Total: 40.21 kcal Total: -66.46 4.19 -62.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241717627.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.504 kcal (2) G-P(sol) polarization free energy of solvation -66.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds