Wall clock time and date at job start Sun Mar 29 2020 21:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46968 * 2 1 4 4 C 1.50695 * 109.47037 * 180.02562 * 3 2 1 5 5 C 1.33086 * 120.00557 * 125.00229 * 4 3 2 6 6 C 1.47280 * 120.00407 * 179.97438 * 5 4 3 7 7 C 1.40199 * 119.90282 * 0.27441 * 6 5 4 8 8 C 1.36139 * 120.09862 * 180.26956 * 7 6 5 9 9 C 1.41008 * 119.89669 * 359.73390 * 8 7 6 10 10 C 1.40931 * 120.09623 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00702 * 154.36286 * 10 9 8 12 12 C 1.40030 * 119.99917 * 334.36495 * 10 9 8 13 13 N 1.30789 * 119.99873 * 343.17372 * 12 10 9 14 14 Si 1.86794 * 120.00002 * 163.18177 * 12 10 9 15 15 H 1.48506 * 109.47358 * 89.99852 * 14 12 10 16 16 H 1.48501 * 109.47198 * 209.99801 * 14 12 10 17 17 H 1.48504 * 109.47492 * 329.99695 * 14 12 10 18 18 C 1.40973 * 119.81333 * 359.97438 * 9 8 7 19 19 C 1.36177 * 119.89729 * 0.02562 * 18 9 8 20 20 C 1.50700 * 119.94989 * 179.97438 * 19 18 9 21 21 H 1.09000 * 109.46979 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47333 * 299.99657 * 1 2 3 23 23 H 1.09002 * 109.47314 * 59.99751 * 1 2 3 24 24 H 1.09003 * 109.46984 * 240.00286 * 2 1 3 25 25 H 1.09002 * 109.47314 * 120.00249 * 2 1 3 26 26 H 1.08996 * 109.46814 * 60.00024 * 3 2 1 27 27 H 1.09002 * 109.47307 * 300.00253 * 3 2 1 28 28 H 1.08002 * 119.99736 * 304.99788 * 4 3 2 29 29 H 1.07999 * 119.99203 * 359.97438 * 5 4 3 30 30 H 1.07999 * 119.95597 * 359.97438 * 7 6 5 31 31 H 1.07996 * 120.05576 * 179.70185 * 8 7 6 32 32 H 0.96993 * 120.00276 * 180.02562 * 13 12 10 33 33 H 1.07997 * 120.05008 * 180.02562 * 18 9 8 34 34 H 1.09007 * 109.46640 * 90.00011 * 20 19 18 35 35 H 1.09004 * 109.47208 * 330.00638 * 20 19 18 36 36 H 1.08996 * 109.47383 * 210.00275 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2120 2.1038 -0.9449 6 6 5.6848 2.1043 -0.9451 7 6 6.3842 1.4027 0.0470 8 6 7.7455 1.4049 0.0537 9 6 8.4522 2.1097 -0.9424 10 6 9.8615 2.1144 -0.9397 11 1 10.4028 2.2709 -1.8611 12 6 10.5600 1.9162 0.2576 13 7 9.9454 2.0543 1.4038 14 14 12.3696 1.4550 0.2178 15 1 13.1955 2.6891 0.2297 16 1 12.6963 0.6293 1.4081 17 1 12.6559 0.6797 -1.0161 18 6 7.7449 2.8088 -1.9416 19 6 6.3832 2.8011 -1.9408 20 6 5.6259 3.5485 -3.0081 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9564 -0.8900 28 1 4.0872 0.9060 0.7653 29 1 3.6717 2.6400 -1.7109 30 1 5.8422 0.8635 0.8098 31 1 8.2835 0.8682 0.8211 32 1 10.4292 1.9174 2.2332 33 1 8.2823 3.3495 -2.7066 34 1 5.4477 2.8882 -3.8569 35 1 6.2107 4.4088 -3.3336 36 1 4.6718 3.8888 -2.6058 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242254220.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:05 Heat of formation + Delta-G solvation = -11.903081 kcal Electronic energy + Delta-G solvation = -15015.105926 eV Core-core repulsion = 12655.299342 eV Total energy + Delta-G solvation = -2359.806584 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.83358 -37.02133 -35.84902 -33.64254 -33.09367 -31.02514 -28.18441 -27.53985 -25.65207 -23.28997 -22.30073 -21.50808 -19.96311 -18.83645 -17.35594 -16.61733 -16.00878 -15.69300 -15.24440 -14.80115 -14.43590 -14.24210 -14.01955 -13.81473 -13.47865 -13.21382 -13.17311 -12.76748 -12.71470 -12.45931 -12.36914 -12.23227 -11.99035 -11.77869 -11.53105 -11.22900 -11.17955 -11.11581 -10.38141 -9.30507 -8.75672 -8.60348 -6.31824 0.51420 1.16995 1.34572 1.38190 1.51246 1.97025 2.18116 2.80966 3.74332 4.00513 4.16322 4.28160 4.32084 4.38193 4.46912 4.65161 4.73427 4.79289 4.91234 4.93080 4.97946 5.00556 5.07959 5.10680 5.15518 5.23115 5.32547 5.37347 5.48527 5.51344 5.72491 5.82984 5.92144 6.10331 6.15091 6.33823 6.45720 6.66318 6.87559 7.02511 8.26734 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.037761 B = 0.005186 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.335413 B = 5397.395180 C = 5977.281299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.075 4.075 4 C -0.203 4.203 5 C -0.087 4.087 6 C -0.204 4.204 7 C -0.092 4.092 8 C -0.199 4.199 9 C 0.085 3.915 10 C -0.493 4.493 11 H 0.078 0.922 12 C 0.034 3.966 13 N -0.820 5.820 14 Si 0.986 3.014 15 H -0.260 1.260 16 H -0.265 1.265 17 H -0.258 1.258 18 C -0.247 4.247 19 C -0.051 4.051 20 C -0.103 4.103 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.290 0.710 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.350 -1.538 -2.209 10.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.112 4.112 4 C -0.221 4.221 5 C -0.105 4.105 6 C -0.205 4.205 7 C -0.110 4.110 8 C -0.218 4.218 9 C 0.083 3.917 10 C -0.522 4.522 11 H 0.097 0.903 12 C -0.182 4.182 13 N -0.445 5.445 14 Si 0.806 3.194 15 H -0.184 1.184 16 H -0.189 1.189 17 H -0.181 1.181 18 C -0.267 4.267 19 C -0.052 4.052 20 C -0.159 4.159 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.141 0.859 30 H 0.122 0.878 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.320 -1.531 -1.953 10.614 hybrid contribution 1.225 -0.187 0.370 1.293 sum -9.095 -1.718 -1.583 9.390 Atomic orbital electron populations 1.21761 0.94482 1.02080 1.02198 1.21482 0.96609 0.96101 1.01642 1.20574 0.90847 0.97445 1.02336 1.23312 0.96436 1.02558 0.99780 1.21666 0.91369 0.98861 0.98576 1.18657 0.93320 1.08667 0.99883 1.20822 0.93984 0.98690 0.97479 1.20931 0.93578 1.04703 1.02602 1.18047 0.94052 0.88350 0.91249 1.19872 0.92139 1.44680 0.95500 0.90347 1.26870 1.05882 0.91499 0.93965 1.69869 1.40792 1.34339 0.99513 0.85156 0.75576 0.79409 0.79293 1.18425 1.18916 1.18149 1.20777 0.93967 1.07883 1.04055 1.19747 0.93347 0.96352 0.95706 1.20763 0.99722 0.99113 0.96302 0.92163 0.92265 0.92304 0.92748 0.92520 0.90995 0.91209 0.89019 0.85941 0.87830 0.88352 0.89919 0.88433 0.90768 0.91789 0.90695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.91 71.98 0.71 -1.81 16 2 C -0.12 -2.66 5.92 30.60 0.18 -2.48 16 3 C -0.07 -1.85 5.67 29.85 0.17 -1.68 16 4 C -0.20 -6.66 8.95 24.53 0.22 -6.44 16 5 C -0.09 -3.17 8.93 23.49 0.21 -2.96 16 6 C -0.20 -9.27 5.89 -19.96 -0.12 -9.38 16 7 C -0.09 -4.53 9.33 22.26 0.21 -4.33 16 8 C -0.20 -10.99 8.62 22.46 0.19 -10.79 16 9 C 0.09 4.79 5.57 -21.27 -0.12 4.68 16 10 C -0.49 -27.21 9.03 23.36 0.21 -27.00 16 11 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 12 C 0.03 1.72 5.15 85.28 0.44 2.15 16 13 N -0.82 -43.72 10.95 21.84 0.24 -43.48 16 14 Si 0.99 38.36 29.59 68.60 2.03 40.39 16 15 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 16 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 17 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 18 C -0.25 -12.58 9.36 22.46 0.21 -12.37 16 19 C -0.05 -2.32 5.88 -19.88 -0.12 -2.43 16 20 C -0.10 -3.45 9.51 71.24 0.68 -2.77 16 21 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 1.58 7.82 -2.39 -0.02 1.56 16 28 H 0.09 3.26 6.01 -2.91 -0.02 3.24 16 29 H 0.12 3.83 6.14 -2.91 -0.02 3.82 16 30 H 0.10 4.69 6.13 -2.91 -0.02 4.67 16 31 H 0.10 5.65 6.18 -2.91 -0.02 5.63 16 32 H 0.29 13.89 8.29 -92.71 -0.77 13.12 16 33 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 34 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 36 H 0.07 2.22 6.28 -2.39 -0.02 2.21 16 Total: -1.00 -60.17 297.45 6.39 -53.78 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 1.05 Total: 26.94 kcal Atomic # 6 Polarization: -80.71 SS G_CDS: 3.08 Total: -77.63 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.24 Total: -43.48 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -60.17 6.39 -53.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242254220.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.874 kcal (2) G-P(sol) polarization free energy of solvation -60.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds