Wall clock time and date at job start Sun Mar 29 2020 21:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47531 * 2 1 4 4 C 1.50698 * 109.47661 * 179.97438 * 3 2 1 5 5 C 1.32566 * 120.00320 * 124.99164 * 4 3 2 6 6 C 1.47808 * 120.00328 * 180.02562 * 5 4 3 7 7 C 1.39538 * 120.14270 * 180.02562 * 6 5 4 8 8 C 1.37970 * 119.85258 * 179.97438 * 7 6 5 9 9 C 1.38339 * 120.14649 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.85860 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47064 * 89.99679 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 C 1.38344 * 120.28687 * 0.25177 * 9 8 7 20 20 C 1.37976 * 120.13890 * 359.44885 * 19 9 8 21 21 H 1.08993 * 109.47138 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47320 * 300.00620 * 1 2 3 23 23 H 1.09005 * 109.46554 * 60.00137 * 1 2 3 24 24 H 1.09001 * 109.47320 * 239.99380 * 2 1 3 25 25 H 1.09009 * 109.46953 * 119.99547 * 2 1 3 26 26 H 1.09001 * 109.47325 * 59.99383 * 3 2 1 27 27 H 1.09009 * 109.46632 * 299.99743 * 3 2 1 28 28 H 1.08006 * 119.99886 * 305.00136 * 4 3 2 29 29 H 1.08006 * 119.99794 * 0.02562 * 5 4 3 30 30 H 1.07999 * 120.07001 * 359.95215 * 7 6 5 31 31 H 1.08002 * 119.92491 * 179.97438 * 8 7 6 32 32 H 1.09002 * 109.47152 * 329.99772 * 10 9 8 33 33 H 1.09001 * 109.46980 * 209.99872 * 10 9 8 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 35 35 H 1.07996 * 119.93481 * 179.70837 * 19 9 8 36 36 H 1.08001 * 120.07379 * 180.29954 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.2104 2.1007 -0.9397 6 6 5.6884 2.1003 -0.9394 7 6 6.3895 2.7926 -1.9275 8 6 7.7692 2.7886 -1.9211 9 6 8.4575 2.0999 -0.9385 10 6 9.9645 2.0994 -0.9381 11 6 10.4671 3.2628 -0.1227 12 1 9.7654 3.9351 0.3486 13 6 11.8227 3.4684 0.0226 14 7 12.6771 2.6495 -0.5508 15 14 12.4455 4.9101 1.0340 16 1 11.2906 5.6747 1.5698 17 1 13.2697 4.4047 2.1612 18 1 13.2713 5.7969 0.1756 19 6 7.7684 1.4068 0.0406 20 6 6.3887 1.4079 0.0492 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6767 1.9564 0.8899 27 1 1.6768 1.9563 -0.8901 28 1 4.0868 0.9061 0.7671 29 1 3.6707 2.6373 -1.7060 30 1 5.8533 3.3300 -2.6956 31 1 8.3130 3.3237 -2.6856 32 1 10.3282 2.1892 -1.9618 33 1 10.3275 1.1677 -0.5040 34 1 13.6308 2.7944 -0.4488 35 1 8.3115 0.8671 0.8023 36 1 5.8518 0.8704 0.8169 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242254344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:09 Heat of formation + Delta-G solvation = 3.975492 kcal Electronic energy + Delta-G solvation = -14559.040213 eV Core-core repulsion = 12199.922175 eV Total energy + Delta-G solvation = -2359.118037 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.75519 -36.22886 -33.91528 -32.61877 -30.60297 -30.21253 -27.70041 -25.55584 -23.21504 -22.18139 -21.57408 -20.40437 -18.98438 -16.40246 -16.16136 -15.16450 -14.91087 -14.51215 -14.21352 -13.87609 -13.30669 -12.99757 -12.78011 -12.63889 -12.41760 -11.92851 -11.80916 -11.49592 -11.27520 -11.22150 -10.89836 -10.78542 -10.69072 -10.46811 -10.15392 -9.81210 -9.49638 -9.15891 -8.44094 -8.29870 -7.36546 -6.05247 -4.09394 1.45556 2.07864 2.94251 3.28752 3.36387 3.41919 4.39887 4.61657 4.68440 4.83385 4.94455 5.12289 5.26996 5.29100 5.41085 5.51812 5.57241 5.61374 5.66057 5.74480 5.83932 5.98059 6.00405 6.12327 6.15826 6.24538 6.59259 6.63083 6.76063 6.84715 7.17909 7.19535 7.23935 7.49637 7.72877 7.84319 7.90601 8.30678 8.96241 9.54562 11.04403 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.054832 B = 0.003947 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.531747 B = 7092.747824 C = 7176.959758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.087 4.087 4 C -0.173 4.173 5 C -0.098 4.098 6 C -0.098 4.098 7 C -0.108 4.108 8 C -0.126 4.126 9 C -0.027 4.027 10 C 0.045 3.955 11 C -0.511 4.511 12 H 0.058 0.942 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.126 4.126 20 C -0.112 4.112 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.262 0.738 35 H 0.118 0.882 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.963 -3.296 -0.086 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.124 4.124 4 C -0.191 4.191 5 C -0.116 4.116 6 C -0.098 4.098 7 C -0.126 4.126 8 C -0.144 4.144 9 C -0.027 4.027 10 C 0.008 3.992 11 C -0.549 4.549 12 H 0.076 0.924 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.144 4.144 20 C -0.130 4.130 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.137 0.863 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.136 0.864 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -18.779 -3.327 -0.109 19.071 hybrid contribution 0.527 0.828 0.553 1.126 sum -18.251 -2.500 0.443 18.427 Atomic orbital electron populations 1.21794 0.96030 1.01499 1.01705 1.21492 0.95395 0.96709 1.02297 1.20661 0.92787 0.96875 1.02052 1.23217 0.95227 1.01018 0.99597 1.21676 0.92385 0.99119 0.98450 1.18817 0.92293 1.01339 0.97314 1.21135 0.94310 0.99233 0.97964 1.21033 0.93372 1.00307 0.99719 1.20786 0.98969 0.91329 0.91658 1.18399 0.84559 0.97994 0.98214 1.21096 0.91459 1.11040 1.31307 0.92406 1.25020 0.96893 0.96597 0.95877 1.69968 1.02127 1.37203 1.44028 0.86474 0.78870 0.82384 0.79976 1.19643 1.20916 1.20910 1.21028 0.93330 1.00813 0.99232 1.21163 0.94279 0.99553 0.97995 0.92847 0.92815 0.92817 0.91881 0.91944 0.91340 0.91805 0.87027 0.87217 0.86978 0.86329 0.95265 0.95277 0.92876 0.86364 0.86903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.12 -1.05 5.92 -26.73 -0.16 -1.20 16 3 C -0.09 -0.83 5.66 -27.88 -0.16 -0.98 16 4 C -0.17 -2.07 8.94 -36.22 -0.32 -2.39 16 5 C -0.10 -1.33 9.52 -37.58 -0.36 -1.69 16 6 C -0.10 -1.63 5.87 -105.01 -0.62 -2.24 16 7 C -0.11 -1.87 9.79 -39.20 -0.38 -2.25 16 8 C -0.13 -2.52 9.68 -39.64 -0.38 -2.90 16 9 C -0.03 -0.61 5.07 -104.54 -0.53 -1.14 16 10 C 0.05 1.17 5.10 -29.03 -0.15 1.02 16 11 C -0.51 -14.44 9.09 -34.44 -0.31 -14.75 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 15 Si 0.90 21.65 29.54 -169.99 -5.02 16.62 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C -0.13 -2.52 9.68 -39.64 -0.38 -2.90 16 20 C -0.11 -1.94 9.40 -39.19 -0.37 -2.31 16 21 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.58 7.81 -51.92 -0.41 0.17 16 28 H 0.11 1.35 6.04 -52.48 -0.32 1.03 16 29 H 0.11 1.31 7.87 -52.48 -0.41 0.89 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 32 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 33 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 36 H 0.11 1.66 6.17 -52.49 -0.32 1.34 16 LS Contribution 306.36 15.07 4.62 4.62 Total: -1.00 -29.58 306.36 -9.17 -38.75 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -5.64 Total: -1.25 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: -3.85 Total: -32.95 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.74 Total: -25.79 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.58 -9.17 -38.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242254344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.725 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds