Wall clock time and date at job start Sun Mar 29 2020 21:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47531 * 2 1 4 4 C 1.50698 * 109.47661 * 179.97438 * 3 2 1 5 5 C 1.32566 * 120.00320 * 124.99164 * 4 3 2 6 6 C 1.47808 * 120.00328 * 180.02562 * 5 4 3 7 7 C 1.39538 * 120.14270 * 180.02562 * 6 5 4 8 8 C 1.37970 * 119.85258 * 179.97438 * 7 6 5 9 9 C 1.38339 * 120.14649 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.85860 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47064 * 89.99679 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 C 1.38344 * 120.28687 * 0.25177 * 9 8 7 20 20 C 1.37976 * 120.13890 * 359.44885 * 19 9 8 21 21 H 1.08993 * 109.47138 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47320 * 300.00620 * 1 2 3 23 23 H 1.09005 * 109.46554 * 60.00137 * 1 2 3 24 24 H 1.09001 * 109.47320 * 239.99380 * 2 1 3 25 25 H 1.09009 * 109.46953 * 119.99547 * 2 1 3 26 26 H 1.09001 * 109.47325 * 59.99383 * 3 2 1 27 27 H 1.09009 * 109.46632 * 299.99743 * 3 2 1 28 28 H 1.08006 * 119.99886 * 305.00136 * 4 3 2 29 29 H 1.08006 * 119.99794 * 0.02562 * 5 4 3 30 30 H 1.07999 * 120.07001 * 359.95215 * 7 6 5 31 31 H 1.08002 * 119.92491 * 179.97438 * 8 7 6 32 32 H 1.09002 * 109.47152 * 329.99772 * 10 9 8 33 33 H 1.09001 * 109.46980 * 209.99872 * 10 9 8 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 35 35 H 1.07996 * 119.93481 * 179.70837 * 19 9 8 36 36 H 1.08001 * 120.07379 * 180.29954 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.2104 2.1007 -0.9397 6 6 5.6884 2.1003 -0.9394 7 6 6.3895 2.7926 -1.9275 8 6 7.7692 2.7886 -1.9211 9 6 8.4575 2.0999 -0.9385 10 6 9.9645 2.0994 -0.9381 11 6 10.4671 3.2628 -0.1227 12 1 9.7654 3.9351 0.3486 13 6 11.8227 3.4684 0.0226 14 7 12.6771 2.6495 -0.5508 15 14 12.4455 4.9101 1.0340 16 1 11.2906 5.6747 1.5698 17 1 13.2697 4.4047 2.1612 18 1 13.2713 5.7969 0.1756 19 6 7.7684 1.4068 0.0406 20 6 6.3887 1.4079 0.0492 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8901 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6767 1.9564 0.8899 27 1 1.6768 1.9563 -0.8901 28 1 4.0868 0.9061 0.7671 29 1 3.6707 2.6373 -1.7060 30 1 5.8533 3.3300 -2.6956 31 1 8.3130 3.3237 -2.6856 32 1 10.3282 2.1892 -1.9618 33 1 10.3275 1.1677 -0.5040 34 1 13.6308 2.7944 -0.4488 35 1 8.3115 0.8671 0.8023 36 1 5.8518 0.8704 0.8169 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242254344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:08 Heat of formation + Delta-G solvation = -9.469444 kcal Electronic energy + Delta-G solvation = -14559.623229 eV Core-core repulsion = 12199.922175 eV Total energy + Delta-G solvation = -2359.701053 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.19442 -37.17816 -35.55928 -34.15407 -32.06360 -31.65572 -29.16814 -26.89071 -24.89498 -23.63264 -22.53991 -21.69630 -20.12195 -18.54895 -17.49921 -16.64015 -16.18979 -15.86516 -15.60953 -14.89479 -14.57948 -14.29586 -14.20491 -14.03925 -13.71254 -13.29145 -13.15489 -13.01398 -12.68435 -12.50856 -12.40439 -12.04355 -11.84560 -11.62902 -11.60812 -11.50288 -11.32084 -10.63592 -10.62008 -9.76079 -8.77207 -8.20838 -6.36511 0.15855 0.60728 1.37991 1.38154 1.52110 1.71777 2.38655 3.07712 3.13124 3.78254 3.95345 4.15372 4.20700 4.28057 4.33256 4.36328 4.47306 4.61753 4.70188 4.78548 4.89274 4.96641 5.05337 5.11044 5.18997 5.25322 5.32469 5.32671 5.39758 5.49670 5.52288 5.60881 5.72071 5.81554 6.02453 6.07365 6.11161 6.27007 6.76262 7.32252 8.86876 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.054832 B = 0.003947 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.531747 B = 7092.747824 C = 7176.959758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.087 4.087 4 C -0.147 4.147 5 C -0.123 4.123 6 C -0.084 4.084 7 C -0.108 4.108 8 C -0.137 4.137 9 C -0.066 4.066 10 C 0.055 3.945 11 C -0.529 4.529 12 H 0.053 0.947 13 C 0.003 3.997 14 N -0.930 5.930 15 Si 0.968 3.032 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.274 1.274 19 C -0.137 4.137 20 C -0.114 4.114 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.131 0.869 30 H 0.145 0.855 31 H 0.114 0.886 32 H 0.003 0.997 33 H 0.002 0.998 34 H 0.266 0.734 35 H 0.113 0.887 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.770 -2.522 0.665 21.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.124 4.124 4 C -0.164 4.164 5 C -0.141 4.141 6 C -0.084 4.084 7 C -0.126 4.126 8 C -0.155 4.155 9 C -0.066 4.066 10 C 0.018 3.982 11 C -0.567 4.567 12 H 0.071 0.929 13 C -0.195 4.195 14 N -0.570 5.570 15 Si 0.792 3.208 16 H -0.190 1.190 17 H -0.200 1.200 18 H -0.200 1.200 19 C -0.155 4.155 20 C -0.132 4.132 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.129 0.871 29 H 0.149 0.851 30 H 0.163 0.837 31 H 0.133 0.867 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.598 -2.560 0.638 21.758 hybrid contribution 1.224 0.504 0.333 1.365 sum -20.374 -2.056 0.972 20.500 Atomic orbital electron populations 1.21779 0.94929 1.02030 1.02155 1.21483 0.96383 0.95949 1.02084 1.20730 0.90841 0.97724 1.03091 1.23525 0.96757 0.98204 0.97952 1.21694 0.90364 1.01569 1.00480 1.19239 0.94282 0.99055 0.95842 1.21431 0.93049 0.99189 0.98910 1.21071 0.94870 1.00333 0.99194 1.20485 0.96700 0.94947 0.94487 1.18124 0.87894 0.96164 0.95984 1.21395 0.91917 1.11681 1.31680 0.92898 1.25959 0.97040 0.99516 0.96973 1.70088 1.02592 1.39059 1.45299 0.85355 0.78332 0.78727 0.78390 1.18999 1.20017 1.19986 1.21047 0.94773 1.00888 0.98769 1.21421 0.93075 0.99703 0.98989 0.92360 0.92287 0.92466 0.92438 0.91907 0.90165 0.90890 0.87095 0.85144 0.83699 0.86748 0.97867 0.97922 0.92488 0.86881 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.12 -1.70 5.92 30.59 0.18 -1.52 16 3 C -0.09 -1.32 5.66 29.85 0.17 -1.15 16 4 C -0.15 -2.97 8.94 24.53 0.22 -2.75 16 5 C -0.12 -2.90 9.52 23.65 0.23 -2.68 16 6 C -0.08 -2.62 5.87 -20.12 -0.12 -2.74 16 7 C -0.11 -3.56 9.79 22.52 0.22 -3.34 16 8 C -0.14 -5.55 9.68 22.23 0.22 -5.33 16 9 C -0.07 -3.06 5.07 -19.81 -0.10 -3.16 16 10 C 0.06 3.07 5.10 29.10 0.15 3.21 16 11 C -0.53 -31.08 9.09 25.60 0.23 -30.85 16 12 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 13 C 0.00 0.19 5.46 84.66 0.46 0.65 16 14 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 15 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 C -0.14 -5.59 9.68 22.23 0.22 -5.37 16 20 C -0.11 -3.81 9.40 22.52 0.21 -3.60 16 21 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 22 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.02 7.81 -2.38 -0.02 1.00 16 28 H 0.11 2.27 6.04 -2.91 -0.02 2.25 16 29 H 0.13 2.56 7.87 -2.91 -0.02 2.53 16 30 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 32 H 0.00 0.18 8.08 -2.39 -0.02 0.16 16 33 H 0.00 0.15 8.08 -2.39 -0.02 0.13 16 34 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.14 3.81 6.17 -2.91 -0.02 3.79 16 Total: -1.00 -65.38 306.36 6.33 -59.05 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 1.03 Total: 10.26 kcal Atomic # 6 Polarization: -62.64 SS G_CDS: 3.00 Total: -59.65 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.28 Total: -56.67 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -65.38 6.33 -59.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242254344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.579 kcal (2) G-P(sol) polarization free energy of solvation -65.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds