Wall clock time and date at job start Sun Mar 29 2020 21:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47332 * 2 1 4 4 C 1.50703 * 109.47064 * 180.02562 * 3 2 1 5 5 C 1.33083 * 120.00249 * 125.00151 * 4 3 2 6 6 C 1.47277 * 119.99884 * 179.97438 * 5 4 3 7 7 C 1.40197 * 119.90858 * 359.97124 * 6 5 4 8 8 C 1.36140 * 120.10270 * 179.71965 * 7 6 5 9 9 C 1.41008 * 119.89455 * 0.55738 * 8 7 6 10 10 C 1.40938 * 120.08887 * 179.74353 * 9 8 7 11 11 H 1.08010 * 119.99262 * 154.20225 * 10 9 8 12 12 C 1.40021 * 120.00308 * 334.19659 * 10 9 8 13 13 N 1.30786 * 119.99885 * 334.58984 * 12 10 9 14 14 Si 1.86804 * 120.00075 * 154.59201 * 12 10 9 15 15 H 1.48499 * 109.47110 * 179.97438 * 14 12 10 16 16 H 1.48493 * 109.46931 * 300.00108 * 14 12 10 17 17 H 1.48502 * 109.46728 * 60.00129 * 14 12 10 18 18 C 1.40970 * 119.81207 * 359.46512 * 9 8 7 19 19 C 1.50703 * 120.04811 * 180.22654 * 18 9 8 20 20 C 1.36172 * 119.90077 * 0.25313 * 18 9 8 21 21 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46932 * 300.00290 * 1 2 3 23 23 H 1.08995 * 109.46671 * 60.00255 * 1 2 3 24 24 H 1.08998 * 109.47378 * 239.99424 * 2 1 3 25 25 H 1.09003 * 109.46999 * 119.99815 * 2 1 3 26 26 H 1.08996 * 109.47349 * 59.99965 * 3 2 1 27 27 H 1.09003 * 109.46927 * 299.99859 * 3 2 1 28 28 H 1.08003 * 119.99535 * 304.99487 * 4 3 2 29 29 H 1.07999 * 119.99750 * 359.97438 * 5 4 3 30 30 H 1.08008 * 119.94809 * 0.02562 * 7 6 5 31 31 H 1.07999 * 120.05534 * 180.30682 * 8 7 6 32 32 H 0.97004 * 120.00364 * 354.16544 * 13 12 10 33 33 H 1.09001 * 109.46630 * 90.00499 * 19 18 9 34 34 H 1.08994 * 109.47110 * 209.99783 * 19 18 9 35 35 H 1.08993 * 109.47215 * 330.00631 * 19 18 9 36 36 H 1.08000 * 119.95060 * 179.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2122 2.1036 -0.9449 6 6 5.6849 2.1039 -0.9451 7 6 6.3843 1.4076 0.0507 8 6 7.7457 1.4005 0.0510 9 6 8.4523 2.1048 -0.9455 10 6 9.8617 2.1047 -0.9460 11 1 10.4014 2.2584 -1.8689 12 6 10.5623 1.9055 0.2499 13 7 10.0036 2.2079 1.3931 14 14 12.2947 1.2078 0.2124 15 1 12.8132 1.0954 1.5994 16 1 12.2736 -0.1359 -0.4191 17 1 13.1747 2.1102 -0.5728 18 6 7.7451 2.8040 -1.9446 19 6 8.4950 3.5542 -3.0152 20 6 6.3834 2.8009 -1.9406 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6768 1.9563 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 4.0873 0.9058 0.7653 29 1 3.6719 2.6398 -1.7109 30 1 5.8422 0.8718 0.8159 31 1 8.2836 0.8598 0.8155 32 1 9.1393 2.6480 1.4093 33 1 8.6762 2.8932 -3.8627 34 1 7.9035 4.4095 -3.3415 35 1 9.4475 3.9021 -2.6156 36 1 5.8408 3.3367 -2.7054 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242254358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:11 Heat of formation + Delta-G solvation = -8.147630 kcal Electronic energy + Delta-G solvation = -15027.280468 eV Core-core repulsion = 12667.636732 eV Total energy + Delta-G solvation = -2359.643735 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.18403 -35.85695 -34.19449 -32.63153 -30.90309 -29.23293 -26.64627 -26.08505 -23.98426 -21.64719 -20.72435 -20.47130 -18.42501 -17.54950 -15.44349 -14.83966 -14.67777 -14.26454 -13.73784 -13.52960 -13.01270 -12.83211 -12.56654 -12.17756 -12.08504 -11.81963 -11.44037 -11.33063 -11.16617 -11.08854 -10.93485 -10.82405 -10.51510 -10.46471 -10.20855 -9.56172 -9.44832 -9.19622 -8.74213 -7.65880 -7.32399 -7.03017 -4.45501 2.14256 2.90084 3.04585 3.11605 3.30192 3.58799 3.93652 4.57572 5.06191 5.14588 5.26729 5.45826 5.57247 5.79272 5.81582 5.91940 5.95226 6.04272 6.15199 6.19017 6.25141 6.30747 6.39561 6.51862 6.57385 6.58391 6.82356 7.00285 7.08672 7.31235 7.35124 7.39976 7.69054 7.74183 7.85872 8.04397 8.12281 8.26539 8.68010 8.80682 9.92280 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.037645 B = 0.005181 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.607528 B = 5403.062261 C = 5951.158198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.075 4.075 4 C -0.232 4.232 5 C -0.058 4.058 6 C -0.218 4.218 7 C -0.062 4.062 8 C -0.225 4.225 9 C 0.104 3.896 10 C -0.503 4.503 11 H 0.081 0.919 12 C 0.036 3.964 13 N -0.785 5.785 14 Si 1.065 2.935 15 H -0.273 1.273 16 H -0.273 1.273 17 H -0.274 1.274 18 C -0.206 4.206 19 C -0.084 4.084 20 C -0.056 4.056 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.302 0.698 33 H 0.041 0.959 34 H 0.038 0.962 35 H 0.060 0.940 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.479 -1.497 -2.143 7.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.113 4.113 4 C -0.250 4.250 5 C -0.076 4.076 6 C -0.219 4.219 7 C -0.081 4.081 8 C -0.244 4.244 9 C 0.101 3.899 10 C -0.530 4.530 11 H 0.099 0.901 12 C -0.187 4.187 13 N -0.407 5.407 14 Si 0.888 3.112 15 H -0.197 1.197 16 H -0.199 1.199 17 H -0.200 1.200 18 C -0.207 4.207 19 C -0.141 4.141 20 C -0.075 4.075 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.243 -1.968 -1.114 6.640 hybrid contribution -1.366 0.505 -0.948 1.737 sum -7.609 -1.463 -2.062 8.018 Atomic orbital electron populations 1.21798 0.96461 1.01159 1.01501 1.21500 0.94874 0.97419 1.02052 1.20496 0.93700 0.96022 1.01040 1.22939 0.94235 1.05882 1.01955 1.21547 0.93160 0.96436 0.96456 1.18278 0.91273 1.11009 1.01362 1.20520 0.94116 0.97207 0.96227 1.20831 0.93437 1.06189 1.03987 1.17617 0.93243 0.88400 0.90631 1.20658 0.91994 1.42813 0.97531 0.90095 1.27130 1.06641 0.93439 0.91477 1.70429 1.18418 1.23410 1.28428 0.83639 0.72784 0.77484 0.77315 1.19737 1.19855 1.19983 1.19388 0.92951 1.06085 1.02267 1.20397 0.99750 0.97552 0.96388 1.20343 0.93550 0.97385 0.96200 0.93108 0.92970 0.92978 0.92081 0.92216 0.92347 0.92543 0.87766 0.88785 0.88938 0.87748 0.88427 0.93986 0.94287 0.92121 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.12 -1.51 5.92 -26.73 -0.16 -1.66 16 3 C -0.08 -1.06 5.67 -27.88 -0.16 -1.21 16 4 C -0.23 -4.05 8.95 -36.10 -0.32 -4.37 16 5 C -0.06 -1.12 9.51 -37.70 -0.36 -1.48 16 6 C -0.22 -4.95 5.89 -104.76 -0.62 -5.57 16 7 C -0.06 -1.48 9.33 -39.60 -0.37 -1.85 16 8 C -0.23 -5.78 7.88 -39.29 -0.31 -6.09 16 9 C 0.10 2.72 5.29 -106.79 -0.57 2.15 16 10 C -0.50 -12.93 8.04 -37.89 -0.30 -13.23 16 11 H 0.08 2.00 6.91 -52.48 -0.36 1.64 16 12 C 0.04 0.90 4.93 -17.33 -0.09 0.81 16 13 N -0.78 -20.42 12.31 55.55 0.68 -19.73 16 14 Si 1.06 20.91 30.00 -169.99 -5.10 15.81 16 15 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 16 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 17 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 18 C -0.21 -4.96 5.90 -104.33 -0.62 -5.58 16 19 C -0.08 -1.74 9.39 36.01 0.34 -1.41 16 20 C -0.06 -1.29 9.35 -39.60 -0.37 -1.66 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.76 7.82 -51.93 -0.41 0.35 16 28 H 0.10 1.90 6.01 -52.48 -0.32 1.58 16 29 H 0.09 1.65 7.87 -52.49 -0.41 1.23 16 30 H 0.09 2.01 6.13 -52.48 -0.32 1.68 16 31 H 0.10 2.75 6.50 -52.49 -0.34 2.40 16 32 H 0.30 8.12 6.70 -40.82 -0.27 7.85 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.04 0.71 8.08 -51.93 -0.42 0.29 16 35 H 0.06 1.28 6.76 -51.93 -0.35 0.93 16 36 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 297.41 15.07 4.48 4.48 Total: -1.00 -26.35 297.41 -8.84 -35.19 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.38 Total: 6.56 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: -3.53 Total: -42.31 kcal Atomic # 7 Polarization: -20.42 SS G_CDS: 0.68 Total: -19.73 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.10 Total: 15.81 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -26.35 -8.84 -35.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242254358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.047 kcal (2) G-P(sol) polarization free energy of solvation -26.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds