Wall clock time and date at job start Sun Mar 29 2020 21:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47332 * 2 1 4 4 C 1.50703 * 109.47064 * 180.02562 * 3 2 1 5 5 C 1.33083 * 120.00249 * 125.00151 * 4 3 2 6 6 C 1.47277 * 119.99884 * 179.97438 * 5 4 3 7 7 C 1.40197 * 119.90858 * 359.97124 * 6 5 4 8 8 C 1.36140 * 120.10270 * 179.71965 * 7 6 5 9 9 C 1.41008 * 119.89455 * 0.55738 * 8 7 6 10 10 C 1.40938 * 120.08887 * 179.74353 * 9 8 7 11 11 H 1.08010 * 119.99262 * 154.20225 * 10 9 8 12 12 C 1.40021 * 120.00308 * 334.19659 * 10 9 8 13 13 N 1.30786 * 119.99885 * 334.58984 * 12 10 9 14 14 Si 1.86804 * 120.00075 * 154.59201 * 12 10 9 15 15 H 1.48499 * 109.47110 * 179.97438 * 14 12 10 16 16 H 1.48493 * 109.46931 * 300.00108 * 14 12 10 17 17 H 1.48502 * 109.46728 * 60.00129 * 14 12 10 18 18 C 1.40970 * 119.81207 * 359.46512 * 9 8 7 19 19 C 1.50703 * 120.04811 * 180.22654 * 18 9 8 20 20 C 1.36172 * 119.90077 * 0.25313 * 18 9 8 21 21 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46932 * 300.00290 * 1 2 3 23 23 H 1.08995 * 109.46671 * 60.00255 * 1 2 3 24 24 H 1.08998 * 109.47378 * 239.99424 * 2 1 3 25 25 H 1.09003 * 109.46999 * 119.99815 * 2 1 3 26 26 H 1.08996 * 109.47349 * 59.99965 * 3 2 1 27 27 H 1.09003 * 109.46927 * 299.99859 * 3 2 1 28 28 H 1.08003 * 119.99535 * 304.99487 * 4 3 2 29 29 H 1.07999 * 119.99750 * 359.97438 * 5 4 3 30 30 H 1.08008 * 119.94809 * 0.02562 * 7 6 5 31 31 H 1.07999 * 120.05534 * 180.30682 * 8 7 6 32 32 H 0.97004 * 120.00364 * 354.16544 * 13 12 10 33 33 H 1.09001 * 109.46630 * 90.00499 * 19 18 9 34 34 H 1.08994 * 109.47110 * 209.99783 * 19 18 9 35 35 H 1.08993 * 109.47215 * 330.00631 * 19 18 9 36 36 H 1.08000 * 119.95060 * 179.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2122 2.1036 -0.9449 6 6 5.6849 2.1039 -0.9451 7 6 6.3843 1.4076 0.0507 8 6 7.7457 1.4005 0.0510 9 6 8.4523 2.1048 -0.9455 10 6 9.8617 2.1047 -0.9460 11 1 10.4014 2.2584 -1.8689 12 6 10.5623 1.9055 0.2499 13 7 10.0036 2.2079 1.3931 14 14 12.2947 1.2078 0.2124 15 1 12.8132 1.0954 1.5994 16 1 12.2736 -0.1359 -0.4191 17 1 13.1747 2.1102 -0.5728 18 6 7.7451 2.8040 -1.9446 19 6 8.4950 3.5542 -3.0152 20 6 6.3834 2.8009 -1.9406 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.6768 1.9563 0.8899 27 1 1.6767 1.9563 -0.8900 28 1 4.0873 0.9058 0.7653 29 1 3.6719 2.6398 -1.7109 30 1 5.8422 0.8718 0.8159 31 1 8.2836 0.8598 0.8155 32 1 9.1393 2.6480 1.4093 33 1 8.6762 2.8932 -3.8627 34 1 7.9035 4.4095 -3.3415 35 1 9.4475 3.9021 -2.6156 36 1 5.8408 3.3367 -2.7054 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242254358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:11 Heat of formation + Delta-G solvation = -18.594952 kcal Electronic energy + Delta-G solvation = -15027.733497 eV Core-core repulsion = 12667.636732 eV Total energy + Delta-G solvation = -2360.096765 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.00467 -37.20511 -35.85015 -34.19118 -32.55181 -30.88434 -28.27964 -27.60741 -25.63661 -23.02026 -22.52980 -21.82613 -20.11902 -19.28855 -17.03116 -16.48246 -16.20672 -15.71404 -15.35626 -14.77679 -14.60360 -14.32467 -14.02359 -13.87135 -13.55200 -13.37879 -12.93244 -12.85680 -12.68430 -12.54476 -12.42625 -12.03504 -11.98598 -11.71577 -11.54178 -11.34182 -11.20088 -10.96466 -10.44051 -9.53141 -9.20728 -8.81175 -6.37975 0.44276 1.00054 1.47015 1.51027 1.78345 1.93173 2.31159 2.75883 3.57635 3.94446 4.09639 4.21605 4.27397 4.32933 4.46884 4.55510 4.60164 4.75013 4.84121 4.85854 4.93146 4.94509 5.03832 5.11674 5.19057 5.23015 5.23752 5.32700 5.45792 5.47791 5.71369 5.74205 5.77743 5.91793 6.04265 6.22672 6.32310 6.39963 6.79424 6.93857 7.98387 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.037645 B = 0.005181 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.607528 B = 5403.062261 C = 5951.158198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.076 4.076 4 C -0.200 4.200 5 C -0.088 4.088 6 C -0.209 4.209 7 C -0.079 4.079 8 C -0.244 4.244 9 C 0.072 3.928 10 C -0.536 4.536 11 H 0.082 0.918 12 C 0.002 3.998 13 N -0.812 5.812 14 Si 1.116 2.884 15 H -0.273 1.273 16 H -0.264 1.264 17 H -0.254 1.254 18 C -0.219 4.219 19 C -0.079 4.079 20 C -0.070 4.070 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.283 0.717 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.312 -1.486 -3.098 9.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.113 4.113 4 C -0.218 4.218 5 C -0.106 4.106 6 C -0.210 4.210 7 C -0.097 4.097 8 C -0.263 4.263 9 C 0.069 3.931 10 C -0.564 4.564 11 H 0.100 0.900 12 C -0.215 4.215 13 N -0.434 5.434 14 Si 0.932 3.068 15 H -0.197 1.197 16 H -0.189 1.189 17 H -0.178 1.178 18 C -0.220 4.220 19 C -0.136 4.136 20 C -0.088 4.088 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.136 0.864 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.099 -1.949 -2.084 8.587 hybrid contribution -1.128 0.480 -0.651 1.388 sum -9.227 -1.469 -2.735 9.735 Atomic orbital electron populations 1.21761 0.94436 1.02127 1.02210 1.21482 0.96668 0.96041 1.01657 1.20584 0.90813 0.97506 1.02377 1.23308 0.96487 1.02299 0.99681 1.21605 0.91295 0.99049 0.98663 1.18759 0.93420 1.08784 1.00021 1.20735 0.93623 0.98058 0.97325 1.20807 0.94353 1.07008 1.04150 1.17977 0.94010 0.89363 0.91705 1.20800 0.92272 1.45297 0.98006 0.90018 1.28513 1.09792 0.92456 0.90753 1.70547 1.18034 1.25661 1.29165 0.83028 0.68645 0.77531 0.77559 1.19721 1.18923 1.17797 1.19872 0.94003 1.05657 1.02445 1.20383 0.99229 0.98280 0.95679 1.20707 0.93330 0.97718 0.97042 0.92111 0.92214 0.92339 0.92785 0.92448 0.90879 0.91270 0.88883 0.86376 0.87669 0.89697 0.90430 0.92712 0.91742 0.93216 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.91 71.98 0.71 -1.80 16 2 C -0.12 -2.65 5.92 30.59 0.18 -2.47 16 3 C -0.08 -1.86 5.67 29.85 0.17 -1.69 16 4 C -0.20 -6.48 8.95 24.53 0.22 -6.26 16 5 C -0.09 -3.19 9.51 23.49 0.22 -2.97 16 6 C -0.21 -9.30 5.89 -19.96 -0.12 -9.42 16 7 C -0.08 -3.82 9.33 22.26 0.21 -3.61 16 8 C -0.24 -13.07 7.88 22.46 0.18 -12.90 16 9 C 0.07 3.90 5.29 -21.27 -0.11 3.78 16 10 C -0.54 -28.57 8.04 23.36 0.19 -28.38 16 11 H 0.08 4.17 6.91 -2.91 -0.02 4.15 16 12 C 0.00 0.09 4.93 85.28 0.42 0.51 16 13 N -0.81 -44.28 12.31 21.84 0.27 -44.01 16 14 Si 1.12 42.81 30.00 68.60 2.06 44.86 16 15 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 16 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 17 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 18 C -0.22 -10.56 5.90 -19.68 -0.12 -10.68 16 19 C -0.08 -3.21 9.39 71.24 0.67 -2.54 16 20 C -0.07 -3.11 9.35 22.26 0.21 -2.90 16 21 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 27 H 0.07 1.57 7.82 -2.39 -0.02 1.55 16 28 H 0.09 3.25 6.01 -2.91 -0.02 3.23 16 29 H 0.12 3.72 7.87 -2.91 -0.02 3.70 16 30 H 0.11 4.64 6.13 -2.91 -0.02 4.62 16 31 H 0.08 4.77 6.50 -2.91 -0.02 4.75 16 32 H 0.28 16.24 6.70 -92.71 -0.62 15.62 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.06 2.24 8.08 -2.39 -0.02 2.22 16 35 H 0.05 2.10 6.76 -2.39 -0.02 2.08 16 36 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -58.43 297.41 6.55 -51.88 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 1.19 Total: 28.59 kcal Atomic # 6 Polarization: -84.36 SS G_CDS: 3.03 Total: -81.33 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.27 Total: -44.01 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.06 Total: 44.86 kcal Total: -58.43 6.55 -51.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242254358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.288 kcal (2) G-P(sol) polarization free energy of solvation -58.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds