Wall clock time and date at job start Sun Mar 29 2020 21:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 C 1.50699 * 109.46866 * 179.97438 * 3 2 1 5 5 C 1.32564 * 120.00045 * 124.99787 * 4 3 2 6 6 C 1.47813 * 119.99952 * 179.97438 * 5 4 3 7 7 C 1.39548 * 120.14314 * 0.02562 * 6 5 4 8 8 C 1.37954 * 119.86010 * 179.97438 * 7 6 5 9 9 C 1.38369 * 120.13648 * 359.97438 * 8 7 6 10 10 C 1.38317 * 120.28759 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.92645 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47140 * 90.00099 * 11 10 9 13 13 H 1.08001 * 120.00432 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00304 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99494 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00115 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46836 * 90.00109 * 16 14 12 18 18 H 1.48496 * 109.47124 * 209.99540 * 16 14 12 19 19 H 1.48497 * 109.47364 * 329.99815 * 16 14 12 20 20 C 1.37993 * 120.14260 * 359.76620 * 10 9 8 21 21 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 22 22 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 24 24 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 25 25 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 26 26 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 27 27 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 28 28 H 1.08001 * 120.00132 * 305.00055 * 4 3 2 29 29 H 1.08004 * 120.00125 * 0.02562 * 5 4 3 30 30 H 1.08004 * 120.07398 * 359.97340 * 7 6 5 31 31 H 1.07994 * 119.93363 * 180.02562 * 8 7 6 32 32 H 1.08001 * 119.85416 * 179.97438 * 9 8 7 33 33 H 1.09003 * 109.46914 * 209.99714 * 11 10 9 34 34 H 1.09001 * 109.47465 * 330.00051 * 11 10 9 35 35 H 0.97004 * 119.99578 * 180.02562 * 15 14 12 36 36 H 1.08002 * 120.07536 * 180.28121 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4427 0.0006 5 6 4.2101 2.1010 -0.9396 6 6 5.6882 2.1015 -0.9386 7 6 6.3886 1.4096 0.0503 8 6 7.7681 1.4135 0.0453 9 6 8.4573 2.1012 -0.9378 10 6 7.7690 2.7882 -1.9215 11 6 8.5279 3.5340 -2.9888 12 6 8.7812 2.6180 -4.1582 13 1 8.4284 1.5975 -4.1312 14 6 9.4643 3.0821 -5.2623 15 7 9.8943 4.3245 -5.2950 16 14 9.7789 1.9463 -6.7115 17 1 8.6528 2.0488 -7.6742 18 1 11.0426 2.3407 -7.3843 19 1 9.8912 0.5467 -6.2283 20 6 6.3891 2.7876 -1.9308 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6765 1.9563 -0.8899 27 1 1.6765 1.9564 0.8900 28 1 4.0866 0.9063 0.7671 29 1 3.6704 2.6377 -1.7059 30 1 5.8518 0.8720 0.8181 31 1 8.3113 0.8781 0.8099 32 1 9.5373 2.1016 -0.9371 33 1 7.9417 4.3915 -3.3193 34 1 9.4796 3.8786 -2.5844 35 1 10.3746 4.6511 -6.0719 36 1 5.8529 3.3206 -2.7020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242254661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:14 Heat of formation + Delta-G solvation = 4.203115 kcal Electronic energy + Delta-G solvation = -14651.478471 eV Core-core repulsion = 12292.370304 eV Total energy + Delta-G solvation = -2359.108167 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.75057 -36.18973 -33.78765 -32.75643 -31.03995 -29.79810 -27.09340 -26.04484 -23.40844 -22.16299 -21.20158 -20.80464 -18.52588 -16.40749 -16.13629 -15.28884 -14.97861 -14.59187 -14.25929 -13.74809 -13.26668 -13.15681 -12.65398 -12.48457 -12.34360 -11.95824 -11.72310 -11.40008 -11.27826 -11.10276 -10.99103 -10.81054 -10.69378 -10.44992 -10.19879 -9.77353 -9.47072 -9.35959 -8.42662 -7.94238 -7.54280 -6.04584 -4.08341 1.43043 2.13617 2.94031 3.30429 3.36576 3.41164 4.40464 4.62515 4.71703 4.86649 4.97313 5.15121 5.27936 5.30674 5.44352 5.54105 5.59947 5.64481 5.69393 5.75711 5.86860 5.99937 6.03962 6.12756 6.17727 6.24500 6.52661 6.75441 6.79424 6.82524 7.14092 7.19450 7.29113 7.50454 7.73700 7.85210 7.91509 8.31922 8.96985 9.55485 11.05374 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.029548 B = 0.004668 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.386555 B = 5996.713072 C = 6507.569192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.087 4.087 4 C -0.169 4.169 5 C -0.100 4.100 6 C -0.069 4.069 7 C -0.141 4.141 8 C -0.124 4.124 9 C -0.121 4.121 10 C -0.035 4.035 11 C 0.047 3.953 12 C -0.512 4.512 13 H 0.057 0.943 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.109 4.109 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.028 0.972 34 H 0.029 0.971 35 H 0.262 0.738 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.067 -5.981 10.787 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.125 4.125 4 C -0.187 4.187 5 C -0.118 4.118 6 C -0.069 4.069 7 C -0.159 4.159 8 C -0.142 4.142 9 C -0.139 4.139 10 C -0.035 4.035 11 C 0.010 3.990 12 C -0.550 4.550 13 H 0.075 0.925 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.127 4.127 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.135 0.865 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.969 -5.855 10.672 17.786 hybrid contribution 0.303 -0.585 -0.892 1.109 sum -12.666 -6.440 9.780 17.249 Atomic orbital electron populations 1.21793 0.96010 1.01489 1.01734 1.21491 0.95428 0.96704 1.02269 1.20672 0.92736 0.96901 1.02150 1.23216 0.95266 1.00756 0.99475 1.21764 0.92439 0.99138 0.98439 1.18986 0.92411 0.99249 0.96304 1.20982 0.94119 1.01584 0.99212 1.20956 0.94085 1.00203 0.99002 1.21170 0.99929 0.98000 0.94805 1.20634 0.93547 0.94645 0.94666 1.18365 0.94853 0.94908 0.90840 1.21067 1.35876 0.97730 1.00324 0.92474 1.25016 0.95597 0.95193 0.98548 1.69960 1.38289 1.15019 1.30064 0.86531 0.77678 0.81047 0.82438 1.20567 1.21143 1.19793 1.21203 0.94169 0.99778 0.97574 0.92742 0.92867 0.92842 0.91813 0.92036 0.91634 0.91343 0.87108 0.86880 0.87047 0.87029 0.86467 0.95328 0.95287 0.92838 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 3 C -0.09 -0.87 5.66 -27.88 -0.16 -1.03 16 4 C -0.17 -2.08 8.94 -36.22 -0.32 -2.41 16 5 C -0.10 -1.46 9.52 -37.57 -0.36 -1.81 16 6 C -0.07 -1.22 5.87 -105.02 -0.62 -1.84 16 7 C -0.14 -2.33 9.40 -39.20 -0.37 -2.69 16 8 C -0.12 -2.13 10.03 -39.64 -0.40 -2.52 16 9 C -0.12 -2.42 9.69 -39.50 -0.38 -2.80 16 10 C -0.03 -0.78 5.06 -104.68 -0.53 -1.31 16 11 C 0.05 1.23 5.10 -29.04 -0.15 1.08 16 12 C -0.51 -14.50 9.09 -34.44 -0.31 -14.81 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 16 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 C -0.11 -2.21 9.44 -39.20 -0.37 -2.58 16 21 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.65 7.81 -51.93 -0.41 0.24 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.11 1.31 6.04 -52.49 -0.32 1.00 16 29 H 0.11 1.54 7.87 -52.48 -0.41 1.13 16 30 H 0.11 1.53 6.17 -52.48 -0.32 1.21 16 31 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 33 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 306.36 15.07 4.62 4.62 Total: -1.00 -29.63 306.36 -9.17 -38.79 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.65 Total: -1.00 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: -3.85 Total: -33.24 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.63 -9.17 -38.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242254661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.995 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds