Wall clock time and date at job start Sun Mar 29 2020 21:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 C 1.50699 * 109.46866 * 179.97438 * 3 2 1 5 5 C 1.32564 * 120.00045 * 124.99787 * 4 3 2 6 6 C 1.47813 * 119.99952 * 179.97438 * 5 4 3 7 7 C 1.39548 * 120.14314 * 0.02562 * 6 5 4 8 8 C 1.37954 * 119.86010 * 179.97438 * 7 6 5 9 9 C 1.38369 * 120.13648 * 359.97438 * 8 7 6 10 10 C 1.38317 * 120.28759 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.92645 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47140 * 90.00099 * 11 10 9 13 13 H 1.08001 * 120.00432 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00304 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99494 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00115 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46836 * 90.00109 * 16 14 12 18 18 H 1.48496 * 109.47124 * 209.99540 * 16 14 12 19 19 H 1.48497 * 109.47364 * 329.99815 * 16 14 12 20 20 C 1.37993 * 120.14260 * 359.76620 * 10 9 8 21 21 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 22 22 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 24 24 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 25 25 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 26 26 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 27 27 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 28 28 H 1.08001 * 120.00132 * 305.00055 * 4 3 2 29 29 H 1.08004 * 120.00125 * 0.02562 * 5 4 3 30 30 H 1.08004 * 120.07398 * 359.97340 * 7 6 5 31 31 H 1.07994 * 119.93363 * 180.02562 * 8 7 6 32 32 H 1.08001 * 119.85416 * 179.97438 * 9 8 7 33 33 H 1.09003 * 109.46914 * 209.99714 * 11 10 9 34 34 H 1.09001 * 109.47465 * 330.00051 * 11 10 9 35 35 H 0.97004 * 119.99578 * 180.02562 * 15 14 12 36 36 H 1.08002 * 120.07536 * 180.28121 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4427 0.0006 5 6 4.2101 2.1010 -0.9396 6 6 5.6882 2.1015 -0.9386 7 6 6.3886 1.4096 0.0503 8 6 7.7681 1.4135 0.0453 9 6 8.4573 2.1012 -0.9378 10 6 7.7690 2.7882 -1.9215 11 6 8.5279 3.5340 -2.9888 12 6 8.7812 2.6180 -4.1582 13 1 8.4284 1.5975 -4.1312 14 6 9.4643 3.0821 -5.2623 15 7 9.8943 4.3245 -5.2950 16 14 9.7789 1.9463 -6.7115 17 1 8.6528 2.0488 -7.6742 18 1 11.0426 2.3407 -7.3843 19 1 9.8912 0.5467 -6.2283 20 6 6.3891 2.7876 -1.9308 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6765 1.9563 -0.8899 27 1 1.6765 1.9564 0.8900 28 1 4.0866 0.9063 0.7671 29 1 3.6704 2.6377 -1.7059 30 1 5.8518 0.8720 0.8181 31 1 8.3113 0.8781 0.8099 32 1 9.5373 2.1016 -0.9371 33 1 7.9417 4.3915 -3.3193 34 1 9.4796 3.8786 -2.5844 35 1 10.3746 4.6511 -6.0719 36 1 5.8529 3.3206 -2.7020 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242254661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:13 Heat of formation + Delta-G solvation = -9.416890 kcal Electronic energy + Delta-G solvation = -14652.069079 eV Core-core repulsion = 12292.370304 eV Total energy + Delta-G solvation = -2359.698775 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.19494 -37.16842 -35.53499 -34.15397 -32.73272 -30.99925 -28.92470 -27.06160 -25.34859 -23.24560 -22.66164 -21.81630 -19.78959 -18.54278 -17.59080 -16.57391 -16.33142 -16.14580 -15.51632 -14.81494 -14.57772 -14.35917 -14.18314 -14.00849 -13.52585 -13.35076 -13.23030 -12.91467 -12.61689 -12.56668 -12.24752 -12.21388 -12.01262 -11.65029 -11.58327 -11.48291 -11.28117 -10.79280 -10.63393 -9.51301 -8.87268 -8.22910 -6.36796 0.12385 0.65103 1.37674 1.39146 1.50791 1.69386 2.38265 3.07435 3.13461 3.75171 3.97129 4.15130 4.22107 4.26629 4.30504 4.39329 4.46178 4.65100 4.67320 4.77669 4.85692 4.95776 5.03273 5.12325 5.22365 5.23909 5.31336 5.33924 5.36922 5.48949 5.52170 5.63436 5.72016 5.78095 5.99943 6.08213 6.10901 6.27672 6.75560 7.31843 8.86591 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.029548 B = 0.004668 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.386555 B = 5996.713072 C = 6507.569192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.131 4.131 5 C -0.137 4.137 6 C -0.060 4.060 7 C -0.137 4.137 8 C -0.112 4.112 9 C -0.143 4.143 10 C -0.064 4.064 11 C 0.056 3.944 12 C -0.531 4.531 13 H 0.053 0.947 14 C 0.004 3.996 15 N -0.930 5.930 16 Si 0.968 3.032 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.266 1.266 20 C -0.134 4.134 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.124 0.876 29 H 0.114 0.886 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.113 0.887 33 H 0.000 1.000 34 H 0.004 0.996 35 H 0.266 0.734 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.764 -8.268 12.283 20.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.127 4.127 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.060 4.060 7 C -0.155 4.155 8 C -0.129 4.129 9 C -0.161 4.161 10 C -0.064 4.064 11 C 0.019 3.981 12 C -0.568 4.568 13 H 0.071 0.929 14 C -0.195 4.195 15 N -0.570 5.570 16 Si 0.792 3.208 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.190 1.190 20 C -0.152 4.152 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.142 0.858 29 H 0.132 0.868 30 H 0.168 0.832 31 H 0.168 0.832 32 H 0.131 0.869 33 H 0.019 0.981 34 H 0.022 0.978 35 H 0.075 0.925 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.675 -8.142 12.178 20.735 hybrid contribution 0.693 0.107 -1.223 1.410 sum -13.982 -8.035 10.955 19.495 Atomic orbital electron populations 1.21783 0.94986 1.02079 1.02095 1.21476 0.96362 0.95719 1.02227 1.20769 0.90998 0.97931 1.03023 1.23548 0.96617 0.97237 0.97473 1.21694 0.90865 1.02292 1.00630 1.19271 0.94096 0.97548 0.95105 1.21436 0.94072 1.00699 0.99272 1.21313 0.94636 0.98696 0.98300 1.21210 0.99964 0.99224 0.95671 1.20342 0.94374 0.96573 0.95104 1.18103 0.93729 0.94311 0.91912 1.21365 1.36137 0.97824 1.01522 0.92916 1.25962 0.95095 0.96824 1.01570 1.70084 1.38888 1.16873 1.31146 0.85405 0.77927 0.78947 0.78549 1.19618 1.20217 1.19012 1.21168 0.93504 1.01510 0.99013 0.92907 0.92223 0.92007 0.92779 0.91183 0.91689 0.89581 0.85799 0.86772 0.83171 0.83227 0.86915 0.98128 0.97815 0.92476 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.12 -1.78 5.92 30.60 0.18 -1.60 16 3 C -0.09 -1.49 5.66 29.85 0.17 -1.32 16 4 C -0.13 -2.77 8.94 24.53 0.22 -2.55 16 5 C -0.14 -3.76 9.52 23.65 0.23 -3.54 16 6 C -0.06 -2.06 5.87 -20.12 -0.12 -2.17 16 7 C -0.14 -4.11 9.40 22.52 0.21 -3.90 16 8 C -0.11 -3.56 10.03 22.23 0.22 -3.34 16 9 C -0.14 -5.79 9.69 22.32 0.22 -5.57 16 10 C -0.06 -2.99 5.06 -19.90 -0.10 -3.09 16 11 C 0.06 3.16 5.10 29.10 0.15 3.31 16 12 C -0.53 -31.43 9.09 25.60 0.23 -31.19 16 13 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 14 C 0.00 0.21 5.46 84.66 0.46 0.67 16 15 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 16 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 C -0.13 -5.64 9.44 22.52 0.21 -5.43 16 21 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 1.12 7.81 -2.39 -0.02 1.10 16 27 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.12 2.31 6.04 -2.91 -0.02 2.29 16 29 H 0.11 3.06 7.87 -2.91 -0.02 3.03 16 30 H 0.15 3.32 6.17 -2.91 -0.02 3.30 16 31 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 32 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.00 0.02 8.09 -2.39 -0.02 0.01 16 34 H 0.00 0.21 8.08 -2.39 -0.02 0.19 16 35 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -66.42 306.36 6.33 -60.09 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 1.03 Total: 10.54 kcal Atomic # 6 Polarization: -63.90 SS G_CDS: 3.00 Total: -60.91 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.28 Total: -56.93 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -66.42 6.33 -60.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242254661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.673 kcal (2) G-P(sol) polarization free energy of solvation -66.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds